Wall clock time and date at job start Tue Mar 31 2020 06:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34718 * 116.99634 * 2 1 4 4 O 1.21474 * 119.99689 * 359.97438 * 3 2 1 5 5 C 1.47722 * 119.99569 * 179.97438 * 3 2 1 6 6 C 1.39641 * 120.15176 * 6.87203 * 5 3 2 7 7 C 1.37929 * 119.84574 * 180.02562 * 6 5 3 8 8 C 1.38386 * 120.15458 * 359.97438 * 7 6 5 9 9 C 1.38353 * 120.29810 * 359.97438 * 8 7 6 10 10 C 1.37960 * 120.15151 * 0.29454 * 9 8 7 11 11 C 1.50698 * 120.07491 * 179.70549 * 10 9 8 12 12 N 1.46506 * 109.46998 * 263.34358 * 11 10 9 13 13 C 1.46501 * 119.99540 * 264.62170 * 12 11 10 14 14 C 1.34772 * 119.99954 * 84.62777 * 12 11 10 15 15 O 1.21543 * 119.99759 * 357.70524 * 14 12 11 16 16 C 1.47885 * 119.99831 * 177.71218 * 14 12 11 17 17 C 1.39922 * 120.02759 * 44.49997 * 16 14 12 18 18 C 1.38325 * 120.35975 * 179.78630 * 17 16 14 19 19 C 1.37750 * 120.41093 * 0.47177 * 18 17 16 20 20 C 1.40751 * 120.04161 * 359.78754 * 19 18 17 21 21 C 1.41437 * 120.18151 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99711 * 325.42156 * 21 20 19 23 23 C 1.39933 * 120.00033 * 145.42732 * 21 20 19 24 24 N 1.30825 * 120.00398 * 356.68351 * 23 21 20 25 25 Si 1.86806 * 119.99940 * 176.69212 * 23 21 20 26 26 H 1.48503 * 109.47333 * 89.99420 * 25 23 21 27 27 H 1.48490 * 109.47185 * 209.99880 * 25 23 21 28 28 H 1.48502 * 109.46797 * 329.99843 * 25 23 21 29 29 C 1.38990 * 120.02515 * 224.77862 * 16 14 12 30 30 H 1.09003 * 109.46982 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47735 * 300.00594 * 1 2 3 32 32 H 1.09003 * 109.47103 * 60.00899 * 1 2 3 33 33 H 1.08002 * 120.07938 * 359.97438 * 6 5 3 34 34 H 1.08001 * 119.92261 * 180.02562 * 7 6 5 35 35 H 1.08000 * 119.85257 * 179.97438 * 8 7 6 36 36 H 1.08002 * 119.91909 * 180.02562 * 9 8 7 37 37 H 1.08998 * 109.47569 * 23.34205 * 11 10 9 38 38 H 1.09006 * 109.47265 * 143.34235 * 11 10 9 39 39 H 1.09002 * 109.47298 * 87.93258 * 13 12 11 40 40 H 1.09003 * 109.47059 * 207.92488 * 13 12 11 41 41 H 1.08997 * 109.47766 * 327.92974 * 13 12 11 42 42 H 1.08002 * 119.82043 * 359.97438 * 17 16 14 43 43 H 1.07996 * 119.79517 * 180.23166 * 18 17 16 44 44 H 1.08007 * 119.98530 * 179.76042 * 19 18 17 45 45 H 0.97002 * 120.00111 * 179.97438 * 24 23 21 46 46 H 1.08005 * 120.19961 * 359.95004 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4018 2.2191 -0.0005 5 6 3.5387 1.2777 0.0006 6 6 4.3020 0.1172 -0.1434 7 6 5.6790 0.1966 -0.1414 8 6 6.3044 1.4227 0.0022 9 6 5.5542 2.5765 0.1442 10 6 4.1762 2.5108 0.1495 11 6 3.3609 3.7679 0.3109 12 7 2.9752 3.9228 1.7158 13 6 1.6687 3.4436 2.1738 14 6 3.8223 4.5061 2.5867 15 8 4.9225 4.8660 2.2160 16 6 3.4132 4.7082 3.9934 17 6 2.7715 3.6788 4.6908 18 6 2.3899 3.8588 6.0081 19 6 2.6282 5.0564 6.6457 20 6 3.2677 6.1054 5.9588 21 6 3.5143 7.3360 6.6107 22 1 2.8101 7.7125 7.3378 23 6 4.6706 8.0659 6.3134 24 7 5.5553 7.5796 5.4813 25 14 4.9513 9.7345 7.1050 26 1 5.6896 9.5590 8.3815 27 1 5.7454 10.5904 6.1875 28 1 3.6418 10.3805 7.3755 29 6 3.6607 5.9229 4.6221 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 3.8152 -0.8404 -0.2551 34 1 6.2705 -0.7001 -0.2531 35 1 7.3829 1.4792 0.0035 36 1 6.0487 3.5302 0.2554 37 1 3.9538 4.6280 0.0000 38 1 2.4650 3.7018 -0.3066 39 1 1.7479 2.3968 2.4669 40 1 1.3435 4.0366 3.0287 41 1 0.9426 3.5410 1.3667 42 1 2.5759 2.7374 4.1988 43 1 1.8985 3.0568 6.5389 44 1 2.3238 5.1908 7.6732 45 1 6.3567 8.0857 5.2750 46 1 4.1524 6.7216 4.0865 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076017889.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:37 Heat of formation + Delta-G solvation = -54.387492 kcal Electronic energy + Delta-G solvation = -31271.132830 eV Core-core repulsion = 27091.343176 eV Total energy + Delta-G solvation = -4179.789655 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.96509 -39.48258 -38.70268 -37.04471 -36.65971 -34.93230 -33.62219 -32.01750 -31.62216 -29.99575 -29.44110 -28.01425 -27.06919 -25.67991 -25.21010 -23.99911 -22.44799 -21.42733 -21.00293 -20.79531 -18.81114 -18.05383 -17.40482 -17.07473 -16.66725 -16.13698 -15.93044 -15.65003 -15.19729 -14.99303 -14.82248 -14.74568 -14.41108 -13.77772 -13.65630 -13.40990 -13.25523 -12.88687 -12.84030 -12.50081 -12.44040 -12.37930 -12.20760 -12.05855 -11.88265 -11.67685 -11.55387 -11.23844 -11.10450 -11.02858 -10.74409 -10.66358 -10.36900 -10.08409 -10.06916 -9.65505 -9.22233 -9.19955 -9.09935 -8.71492 -8.23530 -7.56953 -7.35712 -6.63555 -4.40626 0.57645 1.23062 2.37241 2.42200 2.53162 2.84535 3.10955 3.14714 3.16090 3.46060 3.66286 3.91606 3.98528 4.51177 4.66443 4.71521 4.76916 4.88711 4.93585 4.98429 5.19883 5.24155 5.36241 5.39108 5.55123 5.61249 5.69841 5.78069 5.87208 5.89453 5.93375 6.10954 6.15086 6.18284 6.32810 6.34405 6.37387 6.52972 6.70983 6.75925 6.95786 7.02828 7.08005 7.27646 7.43053 7.64162 7.69616 7.82221 7.90305 8.05763 8.20655 8.54520 8.86738 8.87677 8.92361 10.30570 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.002915 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.692216 B = 9602.893817 C =10619.814725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.506 3.494 4 O -0.492 6.492 5 C -0.122 4.122 6 C -0.070 4.070 7 C -0.136 4.136 8 C -0.085 4.085 9 C -0.104 4.104 10 C -0.033 4.033 11 C 0.137 3.863 12 N -0.606 5.606 13 C 0.088 3.912 14 C 0.566 3.434 15 O -0.539 6.539 16 C -0.123 4.123 17 C -0.205 4.205 18 C -0.105 4.105 19 C -0.201 4.201 20 C 0.102 3.898 21 C -0.469 4.469 22 H 0.078 0.922 23 C 0.070 3.930 24 N -0.801 5.801 25 Si 0.913 3.087 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.263 1.263 29 C -0.089 4.089 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.141 0.859 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.035 0.965 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.281 0.719 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.130 -14.289 -12.997 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.352 3.648 4 O -0.381 6.381 5 C -0.124 4.124 6 C -0.088 4.088 7 C -0.154 4.154 8 C -0.103 4.103 9 C -0.122 4.122 10 C -0.035 4.035 11 C 0.014 3.986 12 N -0.339 5.339 13 C -0.055 4.055 14 C 0.357 3.643 15 O -0.416 6.416 16 C -0.126 4.126 17 C -0.225 4.225 18 C -0.124 4.124 19 C -0.221 4.221 20 C 0.100 3.900 21 C -0.499 4.499 22 H 0.096 0.904 23 C -0.146 4.146 24 N -0.427 5.427 25 Si 0.738 3.262 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.187 1.187 29 C -0.109 4.109 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.158 0.842 37 H 0.101 0.899 38 H 0.135 0.865 39 H 0.053 0.947 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.092 0.908 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.564 -13.722 -13.295 19.644 hybrid contribution 0.138 0.476 0.512 0.713 sum -4.426 -13.246 -12.782 18.933 Atomic orbital electron populations 1.23275 0.75957 1.03652 1.02775 1.86540 1.23555 1.32833 1.84460 1.21290 0.89141 0.81384 0.72965 1.90736 1.66977 1.35026 1.45396 1.18925 0.88891 0.94725 1.09822 1.21369 0.93998 0.97443 0.95973 1.21137 0.94307 0.98092 1.01867 1.21497 1.00505 0.92439 0.95855 1.21291 0.92775 0.99788 0.98379 1.20501 0.94463 0.94426 0.94118 1.20737 1.00031 0.93525 0.84298 1.47692 1.17748 1.60527 1.07931 1.22127 0.84115 0.98175 1.01045 1.19037 0.83748 0.75449 0.86085 1.90673 1.21113 1.50615 1.79178 1.19449 1.04126 0.97220 0.91855 1.20529 1.07866 0.98146 0.95936 1.20457 1.00778 0.96791 0.94347 1.21224 1.08722 0.93576 0.98570 1.17580 0.89437 0.92485 0.90532 1.19497 1.05501 1.03541 1.21377 0.90381 1.25900 0.95503 0.99087 0.94154 1.69759 1.08137 1.37138 1.27637 0.86235 0.79225 0.81321 0.79426 1.19562 1.20210 1.18661 1.21541 0.99695 0.95289 0.94394 0.88180 0.91573 0.91828 0.84737 0.85319 0.85308 0.84166 0.89891 0.86485 0.94679 0.89987 0.90230 0.88795 0.88893 0.88555 0.90766 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.84 9.84 -40.54 -0.40 -4.24 16 3 C 0.51 6.45 7.31 34.61 0.25 6.71 16 4 O -0.49 -6.77 9.20 -19.25 -0.18 -6.94 16 5 C -0.12 -1.61 5.87 -104.98 -0.62 -2.22 16 6 C -0.07 -0.76 9.62 -39.17 -0.38 -1.14 16 7 C -0.14 -1.38 10.03 -39.64 -0.40 -1.78 16 8 C -0.08 -0.97 10.04 -39.48 -0.40 -1.37 16 9 C -0.10 -1.47 9.35 -39.64 -0.37 -1.84 16 10 C -0.03 -0.49 5.45 -104.21 -0.57 -1.06 16 11 C 0.14 2.17 5.00 -5.19 -0.03 2.15 16 12 N -0.61 -11.14 2.87 -184.06 -0.53 -11.67 16 13 C 0.09 1.44 7.35 59.85 0.44 1.88 16 14 C 0.57 12.76 7.23 -12.31 -0.09 12.67 16 15 O -0.54 -13.38 15.99 5.33 0.09 -13.30 16 16 C -0.12 -2.97 5.00 -105.04 -0.52 -3.50 16 17 C -0.20 -4.48 7.59 -38.92 -0.30 -4.78 16 18 C -0.11 -2.29 10.01 -39.73 -0.40 -2.69 16 19 C -0.20 -4.82 9.78 -38.81 -0.38 -5.20 16 20 C 0.10 2.72 5.51 -106.87 -0.59 2.13 16 21 C -0.47 -12.48 9.04 -37.73 -0.34 -12.82 16 22 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 23 C 0.07 1.81 5.34 -17.35 -0.09 1.72 16 24 N -0.80 -21.76 10.88 55.55 0.60 -21.16 16 25 Si 0.91 19.23 29.56 -169.99 -5.03 14.20 16 26 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 27 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 28 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 29 C -0.09 -2.39 8.26 -38.44 -0.32 -2.70 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.13 1.19 7.63 -52.49 -0.40 0.79 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.14 2.13 7.69 -52.49 -0.40 1.72 16 37 H 0.08 1.36 7.52 -51.93 -0.39 0.97 16 38 H 0.12 1.73 5.34 -51.93 -0.28 1.45 16 39 H 0.03 0.55 6.88 -51.93 -0.36 0.20 16 40 H 0.08 1.44 5.71 -51.93 -0.30 1.14 16 41 H 0.08 1.19 5.93 -51.93 -0.31 0.88 16 42 H 0.09 1.85 6.11 -52.49 -0.32 1.53 16 43 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.10 2.15 8.06 -52.48 -0.42 1.72 16 45 H 0.28 7.08 8.30 -40.82 -0.34 6.74 16 46 H 0.13 3.69 6.41 -52.48 -0.34 3.36 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -31.29 380.02 -9.33 -40.62 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -5.60 Total: 9.27 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -4.02 Total: -12.51 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.08 Total: -32.83 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.49 Total: -24.48 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.29 -9.33 -40.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076017889.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.765 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds