Wall clock time and date at job start Tue Mar 31 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.49748 * 2 1 4 4 C 1.53046 * 109.49640 * 239.93557 * 2 1 3 5 5 C 1.53049 * 109.53514 * 178.68329 * 4 2 1 6 6 C 1.53192 * 109.31247 * 61.36168 * 5 4 2 7 7 N 1.46923 * 108.77628 * 305.36798 * 6 5 4 8 8 S 1.65598 * 120.62627 * 233.58218 * 7 6 5 9 9 O 1.42101 * 106.40383 * 330.42460 * 8 7 6 10 10 O 1.42104 * 106.40324 * 197.50377 * 8 7 6 11 11 N 1.65604 * 107.21695 * 83.96521 * 8 7 6 12 12 C 1.46496 * 119.99697 * 95.80350 * 11 8 7 13 13 C 1.50696 * 109.47310 * 264.99486 * 12 11 8 14 14 H 1.07999 * 119.99799 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00437 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00180 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 119.99852 * 0.02562 * 15 13 12 18 18 H 1.48491 * 109.47098 * 89.99448 * 17 15 13 19 19 H 1.48500 * 109.46938 * 209.99622 * 17 15 13 20 20 H 1.48501 * 109.46830 * 329.99590 * 17 15 13 21 21 C 1.46498 * 120.00083 * 275.80061 * 11 8 7 22 22 C 1.50702 * 109.47286 * 263.47834 * 21 11 8 23 23 C 1.38223 * 119.61844 * 94.73648 * 22 21 11 24 24 C 1.38632 * 119.15880 * 179.75220 * 23 22 21 25 25 C 1.38662 * 118.42167 * 0.51065 * 24 23 22 26 26 C 1.38186 * 119.16122 * 359.73164 * 25 24 23 27 27 N 1.31853 * 119.61749 * 275.00952 * 22 21 11 28 28 C 1.46922 * 118.74411 * 53.86128 * 7 6 5 29 29 H 1.08996 * 109.46951 * 184.96438 * 1 2 3 30 30 H 1.08991 * 109.47210 * 304.96930 * 1 2 3 31 31 H 1.09007 * 109.46881 * 64.97047 * 1 2 3 32 32 H 1.08998 * 109.46069 * 58.66860 * 4 2 1 33 33 H 1.08991 * 109.44860 * 298.69282 * 4 2 1 34 34 H 1.09002 * 109.49733 * 301.41217 * 5 4 2 35 35 H 1.08994 * 109.52163 * 181.33373 * 5 4 2 36 36 H 1.08998 * 109.58774 * 185.57237 * 6 5 4 37 37 H 1.09009 * 109.70222 * 65.22145 * 6 5 4 38 38 H 1.08996 * 109.47542 * 25.00476 * 12 11 8 39 39 H 1.09011 * 109.46823 * 144.99636 * 12 11 8 40 40 H 0.96996 * 119.99783 * 180.02562 * 16 15 13 41 41 H 1.08995 * 109.46863 * 143.47321 * 21 11 8 42 42 H 1.09000 * 109.46744 * 23.47741 * 21 11 8 43 43 H 1.07996 * 120.42317 * 359.97438 * 23 22 21 44 44 H 1.08000 * 120.78901 * 180.21610 * 24 23 22 45 45 H 1.08001 * 120.42024 * 179.70779 * 25 24 23 46 46 H 1.08007 * 119.61631 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.58586 * 65.92028 * 28 7 6 48 48 H 1.08999 * 109.58854 * 186.35619 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2486 5 6 3.5709 -0.6947 -1.2662 6 6 4.1053 -1.4266 -0.0311 7 7 3.5046 -0.8294 1.1693 8 16 4.4587 -0.2858 2.4089 9 8 5.6294 -1.0911 2.3970 10 8 3.6115 -0.1627 3.5431 11 7 4.9428 1.2489 2.0181 12 6 4.2036 2.4037 2.5339 13 6 3.1907 2.8496 1.5111 14 1 3.1058 2.3249 0.5709 15 6 2.3717 3.9267 1.7758 16 7 1.4874 4.3155 0.8833 17 14 2.5181 4.8338 3.4023 18 1 3.5057 5.9345 3.2681 19 1 1.1959 5.3978 3.7752 20 1 2.9689 3.8901 4.4565 21 6 6.1102 1.4517 1.1566 22 6 7.3258 1.7074 2.0098 23 6 8.1587 0.6563 2.3447 24 6 9.2772 0.9032 3.1257 25 6 9.5113 2.2019 3.5515 26 6 8.6312 3.2008 3.1811 27 7 7.5797 2.9302 2.4327 28 6 2.0411 -0.7292 1.2518 29 1 -0.3633 -1.0238 0.0889 30 1 -0.3633 0.5889 0.8421 31 1 -0.3633 0.4348 -0.9312 32 1 1.6582 -0.2239 -2.1390 33 1 1.6968 -1.7569 -1.2356 34 1 3.9160 0.3392 -1.2540 35 1 3.9339 -1.1887 -2.1674 36 1 5.1896 -1.3246 0.0134 37 1 3.8397 -2.4824 -0.0861 38 1 3.6916 2.1255 3.4551 39 1 4.8985 3.2189 2.7365 40 1 0.9115 5.0734 1.0695 41 1 5.9367 2.3083 0.5053 42 1 6.2730 0.5610 0.5498 43 1 7.9429 -0.3439 1.9993 44 1 9.9476 0.1022 3.4000 45 1 10.3703 2.4297 4.1651 46 1 8.8063 4.2150 3.5090 47 1 1.6085 -1.7287 1.2980 48 1 1.7630 -0.1668 2.1431 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078760085.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:23 Heat of formation + Delta-G solvation = -43.154920 kcal Electronic energy + Delta-G solvation = -31787.279139 eV Core-core repulsion = 27775.713267 eV Total energy + Delta-G solvation = -4011.565871 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.156 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.95968 -38.31131 -36.81602 -35.89823 -35.31399 -33.03777 -32.65477 -32.20226 -31.43394 -31.23325 -28.07891 -26.39129 -25.60971 -24.15052 -23.31494 -22.24171 -21.82468 -21.45910 -19.61892 -18.37929 -17.54566 -16.96991 -16.71561 -16.58782 -15.86874 -15.79157 -15.24492 -14.85535 -14.52498 -14.12635 -14.05966 -13.80032 -13.69396 -13.30832 -13.21612 -13.20512 -12.97121 -12.40230 -12.38804 -12.29942 -11.95142 -11.85088 -11.61537 -11.56825 -11.47663 -11.29555 -11.27098 -11.24302 -10.88158 -10.76249 -10.48541 -10.36011 -10.18331 -10.12705 -9.92867 -9.69161 -9.44222 -9.19159 -8.85198 -8.62304 -8.54512 -8.10080 -6.09283 -4.07850 1.05483 1.35057 1.49415 3.31598 3.34730 3.40686 3.45648 3.89582 4.17512 4.42771 4.51444 4.82114 4.88818 4.95068 4.99276 5.15013 5.20660 5.22874 5.25985 5.31090 5.41744 5.44721 5.54268 5.66723 5.72539 5.75246 5.92301 5.95048 5.98617 6.06446 6.08155 6.12888 6.15629 6.18630 6.28121 6.34581 6.44123 6.48135 6.51876 6.58563 6.79580 6.86969 6.90695 7.00235 7.08546 7.21631 7.39787 7.63305 8.27054 8.47740 8.93982 9.52831 11.02171 Molecular weight = 353.16amu Principal moments of inertia in cm(-1) A = 0.009162 B = 0.005816 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.389813 B = 4813.091709 C = 6762.828832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 H 0.108 0.892 4 C -0.106 4.106 5 C -0.135 4.135 6 C 0.127 3.873 7 N -1.001 6.001 8 S 2.784 3.216 9 O -0.995 6.995 10 O -0.976 6.976 11 N -0.978 5.978 12 C 0.213 3.787 13 C -0.534 4.534 14 H 0.086 0.914 15 C 0.080 3.920 16 N -0.892 5.892 17 Si 0.863 3.137 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.263 1.263 21 C 0.182 3.818 22 C 0.114 3.886 23 C -0.154 4.154 24 C -0.084 4.084 25 C -0.180 4.180 26 C 0.092 3.908 27 N -0.461 5.461 28 C 0.135 3.865 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.263 0.737 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.145 0.855 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.152 0.848 47 H 0.057 0.943 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.906 -9.680 -2.260 13.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.126 0.874 4 C -0.144 4.144 5 C -0.174 4.174 6 C 0.001 3.999 7 N -0.840 5.840 8 S 2.794 3.206 9 O -0.979 6.979 10 O -0.961 6.961 11 N -0.816 5.816 12 C 0.090 3.910 13 C -0.573 4.573 14 H 0.104 0.896 15 C -0.123 4.123 16 N -0.531 5.531 17 Si 0.690 3.310 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.188 1.188 21 C 0.055 3.945 22 C -0.026 4.026 23 C -0.175 4.175 24 C -0.110 4.110 25 C -0.200 4.200 26 C -0.065 4.065 27 N -0.171 5.171 28 C 0.010 3.990 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.163 0.837 44 H 0.148 0.852 45 H 0.147 0.853 46 H 0.169 0.831 47 H 0.075 0.925 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.390 -9.360 -1.713 12.686 hybrid contribution 0.496 0.252 0.773 0.952 sum 8.886 -9.108 -0.940 12.759 Atomic orbital electron populations 1.21680 0.95242 1.00451 1.02239 1.21705 0.95432 1.02516 0.93673 0.87357 1.21478 0.94847 0.99848 0.98193 1.21917 0.96797 1.01806 0.96882 1.21294 0.97046 0.96866 0.84677 1.58095 1.16665 1.75219 1.33984 1.01826 0.72713 0.72709 0.73390 1.93518 1.48766 1.68387 1.87211 1.93561 1.67995 1.86538 1.47967 1.57575 1.36684 1.24070 1.63314 1.19658 0.91863 0.84054 0.95419 1.21433 1.17238 1.15064 1.03575 0.89616 1.24756 0.94779 0.96562 0.96194 1.69875 1.21851 1.26940 1.34391 0.87033 0.77662 0.80862 0.85404 1.20030 1.21201 1.18794 1.19896 0.80824 1.03191 0.90610 1.21897 0.95874 0.88557 0.96228 1.22259 0.95075 1.01111 0.99038 1.21557 0.96798 0.96828 0.95780 1.22107 1.01465 0.94246 1.02202 1.22774 0.90067 0.99555 0.94140 1.67569 1.17694 1.22356 1.09458 1.21488 0.77944 0.99747 0.99851 0.93809 0.92165 0.92798 0.92181 0.92825 0.90739 0.91624 0.90378 0.91805 0.93923 0.93987 0.92692 0.87900 0.90116 0.83702 0.85166 0.85270 0.83066 0.92497 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.20 37.16 0.34 -1.74 16 2 C -0.11 -1.85 2.89 -90.27 -0.26 -2.11 16 3 H 0.11 2.21 6.07 -51.93 -0.32 1.90 16 4 C -0.11 -1.42 5.17 -26.68 -0.14 -1.56 16 5 C -0.14 -1.71 6.08 -26.61 -0.16 -1.87 16 6 C 0.13 1.68 6.35 -3.71 -0.02 1.66 16 7 N -1.00 -16.51 3.34 -113.27 -0.38 -16.89 16 8 S 2.78 53.73 6.01 -107.50 -0.65 53.08 16 9 O -0.99 -18.65 14.81 -57.17 -0.85 -19.49 16 10 O -0.98 -22.20 15.13 -57.17 -0.87 -23.07 16 11 N -0.98 -19.44 2.81 -116.95 -0.33 -19.77 16 12 C 0.21 5.01 4.47 -5.20 -0.02 4.99 16 13 C -0.53 -13.69 9.85 -34.44 -0.34 -14.03 16 14 H 0.09 2.26 6.09 -52.49 -0.32 1.94 16 15 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 16 N -0.89 -25.28 13.96 55.43 0.77 -24.50 16 17 Si 0.86 21.17 27.47 -169.99 -4.67 16.50 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 21 C 0.18 3.12 5.67 -5.19 -0.03 3.09 16 22 C 0.11 1.94 6.35 -82.59 -0.52 1.42 16 23 C -0.15 -2.31 9.28 -39.44 -0.37 -2.67 16 24 C -0.08 -1.06 10.18 -39.28 -0.40 -1.46 16 25 C -0.18 -2.18 10.11 -39.44 -0.40 -2.58 16 26 C 0.09 1.32 11.18 -17.55 -0.20 1.12 16 27 N -0.46 -8.15 10.12 -9.47 -0.10 -8.25 16 28 C 0.13 2.25 5.72 -3.49 -0.02 2.23 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.96 6.70 -51.93 -0.35 0.61 16 37 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.04 1.08 5.93 -51.93 -0.31 0.77 16 39 H 0.04 1.01 7.38 -51.92 -0.38 0.63 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.10 1.83 8.12 -51.93 -0.42 1.41 16 42 H 0.08 1.13 7.02 -51.93 -0.36 0.77 16 43 H 0.15 2.07 7.10 -52.49 -0.37 1.70 16 44 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 45 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 46 H 0.15 1.75 8.06 -52.48 -0.42 1.33 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.09 1.79 6.96 -51.93 -0.36 1.43 16 LS Contribution 389.50 15.07 5.87 5.87 Total: -1.00 -31.51 389.50 -11.26 -42.77 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.43 Total: 5.20 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -2.64 Total: -11.45 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -0.03 Total: -69.41 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -1.71 Total: -42.56 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Atomic # 16 Polarization: 53.73 SS G_CDS: -0.65 Total: 53.08 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.51 -11.26 -42.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078760085.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.383 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds