Wall clock time and date at job start Tue Mar 31 2020 06:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46889 * 2 1 4 4 S 1.81397 * 109.46742 * 179.97438 * 3 2 1 5 5 O 1.42100 * 108.57884 * 65.51635 * 4 3 2 6 6 O 1.42094 * 108.58118 * 294.48336 * 4 3 2 7 7 C 1.81406 * 101.92191 * 179.97438 * 4 3 2 8 8 C 1.50698 * 109.47234 * 180.02562 * 7 4 3 9 9 O 1.21286 * 120.00043 * 7.72281 * 8 7 4 10 10 N 1.34776 * 119.99999 * 187.72446 * 8 7 4 11 11 C 1.46503 * 119.99983 * 5.02261 * 10 8 7 12 12 C 1.50701 * 109.47155 * 252.60439 * 11 10 8 13 13 H 1.07997 * 119.99999 * 233.96449 * 12 11 10 14 14 C 1.37879 * 120.00063 * 53.69368 * 12 11 10 15 15 N 1.31515 * 119.99694 * 346.42550 * 14 12 11 16 16 Si 1.86790 * 120.00094 * 166.43348 * 14 12 11 17 17 H 1.48502 * 109.47641 * 59.99439 * 16 14 12 18 18 H 1.48498 * 109.47185 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47182 * 299.99684 * 16 14 12 20 20 C 1.39920 * 120.00367 * 185.02033 * 10 8 7 21 21 C 1.38895 * 120.07397 * 189.26933 * 20 10 8 22 22 C 1.38090 * 119.92545 * 179.74870 * 21 20 10 23 23 C 1.38301 * 120.07497 * 0.52549 * 22 21 20 24 24 C 1.50697 * 119.93008 * 179.70488 * 23 22 21 25 25 C 1.38261 * 120.14009 * 359.73103 * 23 22 21 26 26 C 1.50696 * 119.96600 * 179.97438 * 25 23 22 27 27 C 1.38131 * 120.06950 * 0.02562 * 25 23 22 28 28 H 1.09002 * 109.46752 * 300.00090 * 1 2 3 29 29 H 1.08994 * 109.46788 * 60.00091 * 1 2 3 30 30 H 1.08997 * 109.46884 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47225 * 240.00032 * 2 1 3 32 32 H 1.09004 * 109.46831 * 119.99725 * 2 1 3 33 33 H 1.09002 * 109.47497 * 60.00366 * 3 2 1 34 34 H 1.08994 * 109.47186 * 300.00112 * 3 2 1 35 35 H 1.09004 * 109.47126 * 59.99922 * 7 4 3 36 36 H 1.09000 * 109.46921 * 300.00277 * 7 4 3 37 37 H 1.08997 * 109.47314 * 132.60131 * 11 10 8 38 38 H 1.09005 * 109.47336 * 12.60233 * 11 10 8 39 39 H 0.96998 * 119.99971 * 185.03104 * 15 14 12 40 40 H 1.07999 * 120.03127 * 359.97438 * 21 20 10 41 41 H 1.08003 * 119.96305 * 180.25865 * 22 21 20 42 42 H 1.09005 * 109.46796 * 270.02167 * 24 23 22 43 43 H 1.09000 * 109.47098 * 30.02214 * 24 23 22 44 44 H 1.09002 * 109.47374 * 150.02676 * 24 23 22 45 45 H 1.08999 * 109.47151 * 270.01755 * 26 25 23 46 46 H 1.09006 * 109.47472 * 30.01770 * 26 25 23 47 47 H 1.08996 * 109.47371 * 150.01856 * 26 25 23 48 48 H 1.08008 * 120.03762 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 0.0008 5 8 4.3072 0.8841 -1.2248 6 8 4.3062 0.8845 1.2268 7 6 4.2288 3.2174 -0.0001 8 6 5.7227 3.4154 -0.0003 9 8 6.4606 2.4632 -0.1409 10 7 6.2388 4.6506 0.1560 11 6 5.3539 5.7842 0.4357 12 6 5.2530 6.6568 -0.7888 13 1 5.4704 7.7123 -0.7192 14 6 4.8884 6.1064 -1.9993 15 7 4.8882 4.8005 -2.1545 16 14 4.3950 7.2157 -3.4189 17 1 5.5258 8.1159 -3.7600 18 1 4.0509 6.3844 -4.6003 19 1 3.2165 8.0290 -3.0251 20 6 7.6197 4.8503 0.0511 21 6 8.1742 6.0753 0.3991 22 6 9.5380 6.2674 0.2993 23 6 10.3504 5.2453 -0.1568 24 6 11.8375 5.4607 -0.2706 25 6 9.8009 4.0264 -0.5090 26 6 10.6896 2.9156 -1.0061 27 6 8.4380 3.8262 -0.4068 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6768 1.9564 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.8007 3.6796 0.8894 36 1 3.8014 3.6785 -0.8906 37 1 5.7591 6.3657 1.2638 38 1 4.3633 5.4150 0.7014 39 1 4.7029 4.4156 -3.0253 40 1 7.5397 6.8755 0.7507 41 1 9.9703 7.2184 0.5737 42 1 12.0739 5.8463 -1.2624 43 1 12.1596 6.1779 0.4843 44 1 12.3547 4.5137 -0.1163 45 1 10.7820 2.9817 -2.0901 46 1 11.6759 3.0080 -0.5511 47 1 10.2540 1.9535 -0.7366 48 1 8.0092 2.8740 -0.6825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079000334.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:12 Heat of formation + Delta-G solvation = -72.307804 kcal Electronic energy + Delta-G solvation = -30635.730107 eV Core-core repulsion = 26590.607321 eV Total energy + Delta-G solvation = -4045.122786 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.149 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.96575 -38.05159 -36.44361 -35.60313 -35.43656 -34.80853 -33.02557 -31.73928 -31.30106 -29.56955 -28.10995 -27.68807 -26.35508 -25.35596 -23.21274 -22.07731 -21.55471 -20.43629 -18.76188 -18.28003 -17.15386 -16.96881 -16.14487 -15.87236 -15.75479 -15.32210 -15.11489 -14.85841 -14.70399 -14.34132 -14.01976 -13.69736 -13.57543 -13.23777 -12.78425 -12.71227 -12.57054 -12.55480 -12.46697 -12.34760 -12.12651 -12.05684 -11.76262 -11.54607 -11.52935 -11.48258 -11.46142 -11.27844 -11.09204 -11.00114 -10.93435 -10.87328 -10.48709 -10.28643 -10.19883 -10.07616 -9.92164 -9.09215 -8.70797 -8.62297 -7.91245 -6.86698 -6.35222 -4.58248 0.35517 2.08464 2.23222 3.08031 3.17436 3.18184 3.22307 3.45515 3.85335 4.10549 4.17849 4.37585 4.62032 4.67383 4.82155 4.88472 5.03352 5.20344 5.24598 5.41543 5.47994 5.49095 5.52241 5.55541 5.64930 5.71943 5.82539 5.87330 5.87955 5.93203 6.02139 6.11637 6.20151 6.23821 6.27805 6.31727 6.42520 6.51960 6.63383 6.69796 6.89043 7.16170 7.22465 7.40937 7.44395 7.55045 7.73008 8.05927 8.36202 8.51289 8.98126 9.14912 10.55991 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.010172 B = 0.004171 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.990895 B = 6710.765977 C = 8531.392073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.625 4.625 4 S 2.438 3.562 5 O -0.923 6.923 6 O -0.942 6.942 7 C -0.634 4.634 8 C 0.584 3.416 9 O -0.555 6.555 10 N -0.503 5.503 11 C 0.213 3.787 12 C -0.537 4.537 13 H 0.069 0.931 14 C 0.078 3.922 15 N -0.880 5.880 16 Si 0.901 3.099 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.195 3.805 21 C -0.150 4.150 22 C -0.103 4.103 23 C -0.139 4.139 24 C -0.104 4.104 25 C -0.075 4.075 26 C -0.110 4.110 27 C -0.165 4.165 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.199 0.801 37 H 0.038 0.962 38 H 0.048 0.952 39 H 0.275 0.725 40 H 0.124 0.876 41 H 0.112 0.888 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.750 -2.329 4.226 5.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.753 4.753 4 S 2.618 3.382 5 O -0.920 6.920 6 O -0.939 6.939 7 C -0.764 4.764 8 C 0.374 3.626 9 O -0.438 6.438 10 N -0.220 5.220 11 C 0.094 3.906 12 C -0.575 4.575 13 H 0.087 0.913 14 C -0.127 4.127 15 N -0.518 5.518 16 Si 0.728 3.272 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.198 1.198 20 C 0.098 3.902 21 C -0.170 4.170 22 C -0.121 4.121 23 C -0.140 4.140 24 C -0.160 4.160 25 C -0.076 4.076 26 C -0.167 4.167 27 C -0.184 4.184 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.216 0.784 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.142 0.858 41 H 0.130 0.870 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.030 -3.640 4.072 5.827 hybrid contribution -1.061 1.769 -1.058 2.318 sum -3.091 -1.871 3.014 4.705 Atomic orbital electron populations 1.21729 0.94257 1.02008 1.02301 1.21245 0.98067 0.92328 1.03790 1.30508 1.27575 1.05759 1.11455 1.07640 0.76941 0.78043 0.75575 1.93545 1.77898 1.75093 1.45437 1.93518 1.78566 1.75642 1.46223 1.31045 1.04215 1.26096 1.15024 1.18614 0.87081 0.82784 0.74099 1.90450 1.59856 1.41241 1.52287 1.45902 1.04647 1.08576 1.62861 1.19786 0.89803 0.84611 0.96391 1.21394 1.46615 0.95314 0.94212 0.91268 1.25033 0.93453 0.95095 0.99090 1.69593 1.47154 1.10250 1.24838 0.86496 0.79363 0.80474 0.80906 1.19973 1.20911 1.19843 1.17825 0.83084 0.94080 0.95226 1.20753 0.94760 0.96677 1.04848 1.20590 0.92933 0.97795 1.00809 1.19492 0.95290 0.94254 1.04928 1.20690 0.92719 1.01462 1.01165 1.19577 0.94011 0.94416 0.99564 1.20770 0.98330 0.96927 1.00623 1.22269 0.92334 1.02556 1.01286 0.92358 0.92272 0.92161 0.90232 0.90354 0.85266 0.84904 0.84490 0.78431 0.94375 0.93374 0.91501 0.85791 0.87005 0.92309 0.92621 0.91979 0.91846 0.91922 0.91774 0.81205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.32 5.94 -26.73 -0.16 -1.48 16 3 C -0.63 -7.44 5.81 37.16 0.22 -7.23 16 4 S 2.44 42.94 3.99 -107.50 -0.43 42.51 16 5 O -0.92 -19.76 17.79 -61.31 -1.09 -20.85 16 6 O -0.94 -18.99 18.09 -57.88 -1.05 -20.04 16 7 C -0.63 -11.85 4.73 36.00 0.17 -11.67 16 8 C 0.58 13.59 6.04 -10.99 -0.07 13.52 16 9 O -0.56 -14.11 12.18 1.39 0.02 -14.09 16 10 N -0.50 -11.56 2.12 -114.73 -0.24 -11.80 16 11 C 0.21 4.54 5.15 -5.19 -0.03 4.51 16 12 C -0.54 -12.54 8.69 -34.44 -0.30 -12.84 16 13 H 0.07 1.60 7.85 -52.49 -0.41 1.19 16 14 C 0.08 1.85 5.41 -17.82 -0.10 1.75 16 15 N -0.88 -21.51 8.03 55.43 0.45 -21.07 16 16 Si 0.90 19.09 29.56 -169.99 -5.03 14.07 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 20 C 0.19 4.47 6.28 -83.69 -0.53 3.94 16 21 C -0.15 -3.07 8.97 -39.39 -0.35 -3.43 16 22 C -0.10 -1.87 9.69 -39.61 -0.38 -2.25 16 23 C -0.14 -2.47 5.88 -104.59 -0.62 -3.09 16 24 C -0.10 -1.42 9.60 36.00 0.35 -1.07 16 25 C -0.07 -1.46 5.88 -104.65 -0.62 -2.08 16 26 C -0.11 -1.75 9.60 36.00 0.35 -1.41 16 27 C -0.16 -3.76 8.61 -39.39 -0.34 -4.10 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.13 1.19 8.14 -51.92 -0.42 0.77 16 34 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.14 2.02 6.91 -51.92 -0.36 1.66 16 36 H 0.20 3.81 5.52 -51.92 -0.29 3.52 16 37 H 0.04 0.74 6.86 -51.93 -0.36 0.39 16 38 H 0.05 0.95 5.73 -51.93 -0.30 0.65 16 39 H 0.27 6.66 8.32 -40.82 -0.34 6.32 16 40 H 0.12 2.43 6.21 -52.49 -0.33 2.11 16 41 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 44 H 0.06 0.77 5.94 -51.93 -0.31 0.46 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.06 0.84 5.94 -51.93 -0.31 0.53 16 47 H 0.06 1.02 8.08 -51.93 -0.42 0.61 16 48 H 0.17 4.23 4.79 -54.81 -0.26 3.96 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -32.50 390.84 -10.64 -43.14 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -7.12 Total: 10.09 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: -2.03 Total: -27.85 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.20 Total: -32.87 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -2.12 Total: -54.98 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.07 kcal Atomic # 16 Polarization: 42.94 SS G_CDS: -0.43 Total: 42.51 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.50 -10.64 -43.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079000334.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.169 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds