Wall clock time and date at job start Tue Mar 31 2020 06:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00342 * 2 1 4 4 C 1.46896 * 110.99973 * 123.95727 * 2 1 3 5 5 C 1.52998 * 109.47055 * 169.99753 * 4 2 1 6 6 N 1.46509 * 109.46712 * 185.72242 * 5 4 2 7 7 C 1.46496 * 119.99880 * 277.77599 * 6 5 4 8 8 C 1.50707 * 109.47363 * 270.00354 * 7 6 5 9 9 C 1.38678 * 120.41615 * 269.72551 * 8 7 6 10 10 C 1.38623 * 118.41759 * 179.78224 * 9 8 7 11 11 C 1.38228 * 119.16282 * 0.50997 * 10 9 8 12 12 N 1.31854 * 120.76089 * 359.72437 * 11 10 9 13 13 C 1.31882 * 121.72782 * 0.02562 * 12 11 10 14 14 C 1.34773 * 119.99980 * 97.77961 * 6 5 4 15 15 O 1.21549 * 120.00289 * 186.47618 * 14 6 5 16 16 C 1.47885 * 119.99939 * 6.20550 * 14 6 5 17 17 C 1.39922 * 120.02815 * 134.20507 * 16 14 6 18 18 C 1.38332 * 120.36299 * 179.73978 * 17 16 14 19 19 C 1.37757 * 120.40459 * 0.55643 * 18 17 16 20 20 C 1.40744 * 120.04516 * 359.70027 * 19 18 17 21 21 C 1.41440 * 120.18122 * 180.02562 * 20 19 18 22 22 H 1.07991 * 119.99804 * 148.62484 * 21 20 19 23 23 C 1.39933 * 119.99680 * 328.62426 * 21 20 19 24 24 N 1.30827 * 119.99767 * 167.19710 * 23 21 20 25 25 Si 1.86797 * 120.00246 * 347.20219 * 23 21 20 26 26 H 1.48505 * 109.47241 * 92.71310 * 25 23 21 27 27 H 1.48501 * 109.47073 * 212.71038 * 25 23 21 28 28 H 1.48496 * 109.47349 * 332.71401 * 25 23 21 29 29 C 1.38994 * 120.02523 * 314.47800 * 16 14 6 30 30 H 1.08994 * 109.47234 * 296.04765 * 1 2 3 31 31 H 1.09001 * 109.46835 * 56.04409 * 1 2 3 32 32 H 1.08995 * 109.47289 * 176.04337 * 1 2 3 33 33 H 1.08993 * 109.47084 * 183.95510 * 3 2 1 34 34 H 1.08999 * 109.46931 * 303.95773 * 3 2 1 35 35 H 1.08995 * 109.46832 * 63.95298 * 3 2 1 36 36 H 1.09008 * 109.47240 * 49.99663 * 4 2 1 37 37 H 1.09004 * 109.47147 * 290.00200 * 4 2 1 38 38 H 1.09001 * 109.47288 * 65.72754 * 5 4 2 39 39 H 1.08993 * 109.47269 * 305.71896 * 5 4 2 40 40 H 1.09000 * 109.47293 * 30.00217 * 7 6 5 41 41 H 1.09002 * 109.46848 * 150.00243 * 7 6 5 42 42 H 1.08000 * 120.78799 * 0.02562 * 9 8 7 43 43 H 1.07999 * 120.41767 * 180.22234 * 10 9 8 44 44 H 1.07994 * 119.61944 * 179.75153 * 11 10 9 45 45 H 1.08001 * 119.62065 * 179.97438 * 13 12 11 46 46 H 1.08007 * 119.81627 * 0.02562 * 17 16 14 47 47 H 1.07994 * 119.79780 * 180.25898 * 18 17 16 48 48 H 1.07999 * 119.97391 * 179.72045 * 19 18 17 49 49 H 0.97001 * 119.99926 * 180.02562 * 24 23 21 50 50 H 1.08001 * 120.20462 * 359.95322 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9702 6 7 4.0068 -1.8332 2.0302 7 6 4.3060 -1.2845 3.3552 8 6 5.7422 -0.8299 3.3981 9 6 6.7432 -1.7023 3.7981 10 6 8.0506 -1.2419 3.8178 11 6 8.3099 0.0654 3.4510 12 7 7.3320 0.8685 3.0806 13 6 6.0775 0.4633 3.0451 14 6 4.1938 -3.1454 1.7863 15 8 4.4970 -3.8951 2.6937 16 6 4.0242 -3.6743 0.4157 17 6 4.9751 -4.5501 -0.1196 18 6 4.8205 -5.0532 -1.3989 19 6 3.7350 -4.6889 -2.1648 20 6 2.7709 -3.8048 -1.6455 21 6 1.6549 -3.4294 -2.4292 22 1 0.7113 -3.2069 -1.9534 23 6 1.7736 -3.3462 -3.8210 24 7 0.7015 -3.2477 -4.5642 25 14 3.4629 -3.3760 -4.6178 26 1 3.8159 -4.7728 -4.9777 27 1 3.4468 -2.5380 -5.8436 28 1 4.4689 -2.8409 -3.6655 29 6 2.9229 -3.2972 -0.3440 30 1 -0.3633 0.4512 0.9232 31 1 -0.3633 0.5740 -0.8524 32 1 -0.3633 -1.0252 -0.0709 33 1 3.0828 1.3431 -0.0709 34 1 1.5898 1.9163 -0.8524 35 1 1.7045 1.8722 0.9233 36 1 1.5089 -1.7408 1.1755 37 1 1.7975 -0.2249 2.0628 38 1 4.0014 0.0126 1.0341 39 1 3.7086 -1.4053 -0.0013 40 1 3.6504 -0.4367 3.5538 41 1 4.1454 -2.0530 4.1113 42 1 6.5101 -2.7175 4.0837 43 1 8.8558 -1.8949 4.1205 44 1 9.3252 0.4330 3.4675 45 1 5.3032 1.1501 2.7367 46 1 5.8320 -4.8386 0.4711 47 1 5.5578 -5.7318 -1.8014 48 1 3.6235 -5.0824 -3.1644 49 1 0.7837 -3.1905 -5.5290 50 1 2.1883 -2.6185 0.0637 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079050170.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:10 Heat of formation + Delta-G solvation = 44.830126 kcal Electronic energy + Delta-G solvation = -32089.436218 eV Core-core repulsion = 28082.074808 eV Total energy + Delta-G solvation = -4007.361410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.55582 -39.64306 -37.49439 -37.38814 -35.40806 -33.63107 -32.96442 -31.89622 -30.57244 -30.10458 -29.22503 -27.45745 -26.62238 -25.19278 -24.29123 -23.56987 -22.97851 -21.79789 -21.15761 -20.65172 -19.16007 -17.62251 -17.16071 -16.57206 -16.43883 -16.03506 -15.91273 -15.69408 -15.28899 -14.93587 -14.59267 -14.46739 -14.20873 -14.00821 -13.62738 -13.48689 -13.37640 -13.13783 -13.01705 -12.69788 -12.48863 -12.30111 -12.17573 -12.05486 -11.82606 -11.69069 -11.55123 -11.51164 -11.42139 -11.05689 -10.95860 -10.59786 -10.48841 -9.96894 -9.88449 -9.65012 -9.61564 -9.49158 -9.23129 -8.99701 -8.60636 -8.13996 -7.79127 -7.69329 -6.93235 -4.50429 0.94377 1.19835 2.04452 2.54454 3.08639 3.11787 3.20044 3.26560 3.35308 3.78836 3.96397 4.18367 4.31121 4.47541 4.64370 4.68447 4.86693 4.93789 5.00709 5.11739 5.14471 5.29160 5.30524 5.34584 5.43033 5.49240 5.54739 5.56949 5.64956 5.70678 5.73625 5.87104 5.96784 5.97185 6.05067 6.15349 6.18393 6.20044 6.23027 6.37405 6.57623 6.60297 6.68191 6.77584 7.01530 7.13793 7.16677 7.25317 7.41318 7.47354 7.69249 7.76919 7.84119 7.93619 8.32644 8.50600 8.57007 8.77003 10.09242 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.010101 B = 0.003869 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.305708 B = 7234.369000 C = 8494.662895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.531 5.531 3 C 0.022 3.978 4 C 0.039 3.961 5 C 0.098 3.902 6 N -0.607 5.607 7 C 0.158 3.842 8 C -0.152 4.152 9 C -0.053 4.053 10 C -0.175 4.175 11 C 0.095 3.905 12 N -0.488 5.488 13 C 0.110 3.890 14 C 0.573 3.427 15 O -0.546 6.546 16 C -0.105 4.105 17 C -0.192 4.192 18 C -0.085 4.085 19 C -0.221 4.221 20 C 0.087 3.913 21 C -0.432 4.432 22 H 0.092 0.908 23 C 0.085 3.915 24 N -0.811 5.811 25 Si 0.910 3.090 26 H -0.272 1.272 27 H -0.293 1.293 28 H -0.244 1.244 29 C -0.178 4.178 30 H 0.018 0.982 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.020 0.980 36 H 0.086 0.914 37 H 0.030 0.970 38 H 0.068 0.932 39 H 0.119 0.881 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.139 0.861 43 H 0.134 0.866 44 H 0.153 0.847 45 H 0.151 0.849 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.102 0.898 49 H 0.284 0.716 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.126 8.678 11.396 15.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.255 5.255 3 C -0.126 4.126 4 C -0.090 4.090 5 C -0.025 4.025 6 N -0.339 5.339 7 C 0.034 3.966 8 C -0.155 4.155 9 C -0.079 4.079 10 C -0.195 4.195 11 C -0.062 4.062 12 N -0.196 5.196 13 C -0.048 4.048 14 C 0.364 3.636 15 O -0.424 6.424 16 C -0.108 4.108 17 C -0.212 4.212 18 C -0.103 4.103 19 C -0.240 4.240 20 C 0.084 3.916 21 C -0.461 4.461 22 H 0.110 0.890 23 C -0.133 4.133 24 N -0.436 5.436 25 Si 0.737 3.263 26 H -0.199 1.199 27 H -0.220 1.220 28 H -0.167 1.167 29 C -0.197 4.197 30 H 0.036 0.964 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.039 0.961 36 H 0.104 0.896 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.137 0.863 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.157 0.843 43 H 0.151 0.849 44 H 0.171 0.829 45 H 0.169 0.831 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.120 0.880 49 H 0.095 0.905 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.439 8.956 10.973 15.558 hybrid contribution 0.189 -0.500 0.339 0.633 sum 6.628 8.456 11.312 15.601 Atomic orbital electron populations 1.22351 0.86725 1.02962 0.99761 1.61789 1.08153 1.13270 1.42312 1.22453 1.00975 0.89068 1.00122 1.22626 0.96077 0.99099 0.91216 1.21941 0.92752 0.94447 0.93317 1.47861 1.65790 1.08444 1.11833 1.20200 0.90509 0.99573 0.86305 1.21312 0.97710 0.95385 1.01133 1.21683 0.92242 0.99912 0.94087 1.22171 0.97566 0.97539 1.02194 1.22747 0.98475 0.90430 0.94507 1.67680 1.00587 1.37723 1.13623 1.22629 0.93462 0.93668 0.95012 1.18984 0.74526 0.80766 0.89309 1.90667 1.48374 1.57050 1.46343 1.19370 0.98677 1.00812 0.91935 1.20269 1.00534 1.03849 0.96557 1.20522 0.96990 0.98670 0.94120 1.21222 0.98924 1.03618 1.00284 1.17663 0.91977 0.89765 0.92240 1.19397 0.97246 1.38764 0.90644 0.89010 1.26080 0.98606 0.91219 0.97410 1.69647 1.30820 1.35905 1.07220 0.86363 0.83242 0.78416 0.78271 1.19891 1.22042 1.16692 1.21765 0.98640 1.03147 0.96157 0.96377 0.91202 0.90797 0.91298 0.91313 0.96146 0.89552 0.95157 0.91365 0.86274 0.89666 0.88679 0.84303 0.84852 0.82946 0.83135 0.88387 0.88312 0.87998 0.90532 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.57 60.07 0.57 0.97 16 2 N -0.53 -7.46 5.02 -251.27 -1.26 -8.72 16 3 C 0.02 0.25 9.32 60.06 0.56 0.81 16 4 C 0.04 0.52 4.31 -3.83 -0.02 0.51 16 5 C 0.10 1.41 4.65 -4.04 -0.02 1.39 16 6 N -0.61 -9.08 2.46 -176.16 -0.43 -9.51 16 7 C 0.16 1.91 5.62 -5.19 -0.03 1.88 16 8 C -0.15 -1.86 5.48 -104.48 -0.57 -2.44 16 9 C -0.05 -0.65 9.86 -39.28 -0.39 -1.04 16 10 C -0.17 -1.88 10.11 -39.44 -0.40 -2.28 16 11 C 0.10 1.05 11.18 -17.55 -0.20 0.85 16 12 N -0.49 -6.22 10.36 -13.26 -0.14 -6.35 16 13 C 0.11 1.30 10.86 -17.55 -0.19 1.11 16 14 C 0.57 10.76 7.26 -12.31 -0.09 10.67 16 15 O -0.55 -11.21 16.53 5.32 0.09 -11.12 16 16 C -0.10 -2.19 5.10 -105.04 -0.54 -2.73 16 17 C -0.19 -4.07 9.70 -38.92 -0.38 -4.44 16 18 C -0.08 -1.80 10.01 -39.72 -0.40 -2.20 16 19 C -0.22 -5.13 7.01 -38.81 -0.27 -5.40 16 20 C 0.09 2.07 5.12 -106.87 -0.55 1.52 16 21 C -0.43 -10.96 9.60 -37.73 -0.36 -11.32 16 22 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 23 C 0.09 2.13 5.46 -17.35 -0.09 2.04 16 24 N -0.81 -20.84 13.93 55.55 0.77 -20.07 16 25 Si 0.91 20.23 24.41 -169.99 -4.15 16.08 16 26 H -0.27 -5.92 6.67 56.52 0.38 -5.55 16 27 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.24 -5.53 6.70 56.52 0.38 -5.15 16 29 C -0.18 -3.83 7.14 -38.44 -0.27 -4.10 16 30 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.88 8.12 -51.93 -0.42 0.45 16 32 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 33 H 0.07 0.76 6.60 -51.93 -0.34 0.42 16 34 H 0.07 0.76 8.12 -51.93 -0.42 0.33 16 35 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.09 1.33 6.13 -51.92 -0.32 1.01 16 37 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 38 H 0.07 0.84 6.82 -51.93 -0.35 0.48 16 39 H 0.12 2.10 5.04 -51.93 -0.26 1.84 16 40 H 0.09 0.80 7.98 -51.93 -0.41 0.39 16 41 H 0.09 1.21 7.29 -51.93 -0.38 0.83 16 42 H 0.14 1.78 8.04 -52.49 -0.42 1.36 16 43 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 46 H 0.10 1.97 8.06 -52.48 -0.42 1.54 16 47 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 48 H 0.10 2.36 4.46 -52.49 -0.23 2.13 16 49 H 0.28 6.68 8.30 -40.82 -0.34 6.35 16 50 H 0.13 2.50 3.66 -52.49 -0.19 2.31 16 LS Contribution 401.93 15.07 6.06 6.06 Total: -1.00 -29.11 401.93 -9.86 -38.97 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -7.17 Total: 8.88 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -3.63 Total: -14.20 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: -1.06 Total: -44.65 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.15 Total: 16.08 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.11 -9.86 -38.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079050170.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.798 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds