Wall clock time and date at job start Tue Mar 31 2020 05:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00089 * 2 1 4 4 H 1.48499 * 109.46855 * 270.00063 * 3 2 1 5 5 H 1.48500 * 109.46991 * 29.99750 * 3 2 1 6 6 H 1.48492 * 109.47411 * 150.00102 * 3 2 1 7 7 C 1.37878 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00320 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99874 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99899 * 251.94078 * 10 9 7 12 12 C 1.52999 * 109.47019 * 265.29611 * 11 10 9 13 13 C 1.53005 * 117.50015 * 245.26786 * 12 11 10 14 14 C 1.53002 * 60.00128 * 252.50963 * 13 12 11 15 15 C 1.34778 * 120.00156 * 71.94031 * 10 9 7 16 16 O 1.21583 * 119.99946 * 188.73038 * 15 10 9 17 17 C 1.47601 * 119.99692 * 8.73456 * 15 10 9 18 18 C 1.39738 * 120.08964 * 342.87545 * 17 15 10 19 19 C 1.37696 * 119.91246 * 180.23111 * 18 17 15 20 20 C 1.39017 * 120.08697 * 359.52054 * 19 18 17 21 21 O 1.35710 * 119.91408 * 180.23141 * 20 19 18 22 22 C 1.35732 * 117.99903 * 69.27834 * 21 20 19 23 23 C 1.39277 * 120.85031 * 2.46272 * 22 21 20 24 24 C 1.37976 * 119.08734 * 179.79425 * 23 22 21 25 25 N 1.31957 * 120.82653 * 0.48520 * 24 23 22 26 26 C 1.31961 * 121.86794 * 359.74249 * 25 24 23 27 27 C 1.37975 * 120.82470 * 0.02562 * 26 25 24 28 28 C 1.39006 * 120.17421 * 0.25418 * 20 19 18 29 29 C 1.37703 * 120.08614 * 359.97234 * 28 20 19 30 30 H 0.96999 * 119.99939 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46685 * 59.99769 * 9 7 2 32 32 H 1.09006 * 109.46901 * 300.00442 * 9 7 2 33 33 H 1.08999 * 109.47254 * 25.29428 * 11 10 9 34 34 H 1.08992 * 109.47036 * 145.29589 * 11 10 9 35 35 H 1.09002 * 115.55361 * 30.97548 * 12 11 10 36 36 H 1.08997 * 117.49570 * 359.97438 * 13 12 11 37 37 H 1.08996 * 117.49759 * 145.01932 * 13 12 11 38 38 H 1.08997 * 117.49811 * 252.51227 * 14 13 12 39 39 H 1.08996 * 117.49773 * 107.48038 * 14 13 12 40 40 H 1.07997 * 120.04297 * 0.02562 * 18 17 15 41 41 H 1.07997 * 119.95624 * 179.79060 * 19 18 17 42 42 H 1.07997 * 120.45777 * 0.02562 * 23 22 21 43 43 H 1.08004 * 119.58658 * 180.22850 * 24 23 22 44 44 H 1.07996 * 119.58721 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.45469 * 179.97438 * 27 26 25 46 46 H 1.08006 * 119.95953 * 179.97438 * 28 20 19 47 47 H 1.08000 * 120.04699 * 180.02562 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.3801 -4.4250 -1.2068 12 6 1.4834 -5.6619 -1.1248 13 6 2.1690 -7.0272 -1.0409 14 6 1.4652 -6.6026 -2.3314 15 6 2.9160 -3.8897 1.1092 16 8 3.8162 -4.7058 1.0654 17 6 2.6039 -3.2024 2.3776 18 6 1.8392 -2.0329 2.3709 19 6 1.5542 -1.3921 3.5559 20 6 2.0178 -1.9126 4.7587 21 8 1.7309 -1.2807 5.9249 22 6 0.4444 -1.2944 6.3573 23 6 -0.5394 -1.9814 5.6503 24 6 -1.8349 -1.9748 6.1252 25 7 -2.1476 -1.3210 7.2279 26 6 -1.2448 -0.6548 7.9226 27 6 0.0733 -0.6169 7.5164 28 6 2.7749 -3.0783 4.7699 29 6 3.0680 -3.7225 3.5887 30 1 -0.4850 0.8400 -0.0004 31 1 0.6241 -2.5566 -0.8903 32 1 0.6247 -2.5570 0.8897 33 1 2.1090 -3.8372 -2.0838 34 1 3.4218 -4.7359 -1.2857 35 1 0.5518 -5.5316 -0.5742 36 1 3.2588 -7.0441 -1.0446 37 1 1.6884 -7.7952 -0.4349 38 1 0.5217 -7.0912 -2.5743 39 1 2.0921 -6.3400 -3.1835 40 1 1.4750 -1.6303 1.4373 41 1 0.9661 -0.4863 3.5513 42 1 -0.2910 -2.5152 4.7449 43 1 -2.6035 -2.5080 5.5853 44 1 -1.5413 -0.1328 8.8203 45 1 0.8071 -0.0695 8.0893 46 1 3.1336 -3.4795 5.7064 47 1 3.6559 -4.6284 3.5982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079310150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:52 Heat of formation + Delta-G solvation = 69.715519 kcal Electronic energy + Delta-G solvation = -30965.684111 eV Core-core repulsion = 26888.994629 eV Total energy + Delta-G solvation = -4076.689482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.04659 -39.90535 -38.91668 -37.35433 -36.57419 -35.44666 -32.98116 -31.75458 -31.26213 -30.57951 -29.95472 -28.10627 -26.48536 -24.19354 -23.51081 -23.33234 -22.21540 -22.18010 -21.89363 -20.52950 -19.07385 -18.76091 -17.20514 -17.07029 -16.52809 -16.20771 -15.86795 -15.57962 -15.30770 -14.79662 -14.73930 -14.63268 -14.27434 -14.01046 -13.93579 -13.68711 -13.55023 -13.41241 -13.17562 -12.64943 -12.60449 -12.20200 -12.12325 -11.92137 -11.52767 -11.41623 -11.33742 -11.18595 -11.12752 -10.96716 -10.52112 -10.27661 -10.02036 -9.74010 -9.60812 -9.54557 -9.26113 -9.08202 -8.98713 -8.81367 -8.48022 -8.22529 -7.88869 -6.57065 -4.60459 1.06247 1.09022 1.36237 1.86293 3.02644 3.05728 3.14544 3.18824 3.51870 3.70303 3.80111 4.05088 4.10425 4.34901 4.43400 4.70976 4.74593 4.92057 4.99697 5.12241 5.15041 5.19982 5.24898 5.32386 5.33635 5.38913 5.68451 5.69762 5.76425 5.78075 5.82106 5.96743 6.00906 6.06655 6.07953 6.09134 6.13154 6.29997 6.43083 6.48834 6.54045 6.58238 6.61618 6.85305 6.93865 7.02998 7.29367 7.43225 7.46293 7.61763 7.77152 7.96373 8.11028 8.45422 8.87921 9.00171 10.44254 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.008737 B = 0.003684 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.137617 B = 7597.933728 C = 9121.790518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.069 3.931 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.213 3.787 10 N -0.591 5.591 11 C 0.149 3.851 12 C -0.163 4.163 13 C -0.174 4.174 14 C -0.180 4.180 15 C 0.566 3.434 16 O -0.566 6.566 17 C -0.139 4.139 18 C -0.113 4.113 19 C -0.155 4.155 20 C 0.085 3.915 21 O -0.253 6.253 22 C 0.169 3.831 23 C -0.243 4.243 24 C 0.134 3.866 25 N -0.511 5.511 26 C 0.127 3.873 27 C -0.206 4.206 28 C -0.156 4.156 29 C -0.054 4.054 30 H 0.275 0.725 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.265 0.735 41 H 0.126 0.874 42 H 0.145 0.855 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.141 0.859 46 H 0.126 0.874 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 -4.716 6.277 8.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.093 3.907 10 N -0.321 5.321 11 C 0.025 3.975 12 C -0.182 4.182 13 C -0.211 4.211 14 C -0.217 4.217 15 C 0.356 3.644 16 O -0.448 6.448 17 C -0.142 4.142 18 C -0.128 4.128 19 C -0.173 4.173 20 C 0.043 3.957 21 O -0.163 6.163 22 C 0.118 3.882 23 C -0.263 4.263 24 C -0.022 4.022 25 N -0.224 5.224 26 C -0.029 4.029 27 C -0.227 4.227 28 C -0.174 4.174 29 C -0.073 4.073 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.279 0.721 41 H 0.144 0.856 42 H 0.163 0.837 43 H 0.176 0.824 44 H 0.178 0.822 45 H 0.159 0.841 46 H 0.144 0.856 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.051 -4.923 6.597 8.483 hybrid contribution 1.349 0.996 -0.249 1.695 sum -0.702 -3.927 6.348 7.497 Atomic orbital electron populations 1.69913 1.05923 1.28560 1.45975 1.25032 0.95105 0.99732 0.93994 0.86467 0.80322 0.82126 0.78971 1.19811 1.20445 1.19094 1.21309 0.94754 0.90337 1.51689 0.90944 1.20193 0.88251 0.82514 0.99762 1.47967 1.41600 1.31700 1.10792 1.20909 0.98781 0.89972 0.87789 1.22804 1.01568 0.91789 1.02061 1.22958 0.99975 0.98024 1.00109 1.22908 1.02440 1.04133 0.92264 1.18115 0.81244 0.81191 0.83818 1.90659 1.31137 1.37016 1.85982 1.20086 1.02751 0.98203 0.93208 1.26192 0.90792 0.90856 1.04956 1.21579 1.02823 1.01379 0.91531 1.19177 0.99768 0.93179 0.83582 1.84294 1.23990 1.70040 1.37962 1.19552 0.83284 0.92660 0.92749 1.22462 0.94849 1.05285 1.03749 1.22599 0.94323 0.93844 0.91448 1.67708 1.37296 1.09679 1.07684 1.22578 0.87920 0.94389 0.98050 1.21485 0.98674 1.04924 0.97608 1.20777 1.03528 0.94322 0.98791 1.21055 0.96604 0.98997 0.90648 0.91509 0.93419 0.92955 0.89936 0.90624 0.87824 0.88650 0.89469 0.89112 0.88888 0.72148 0.85649 0.83711 0.82368 0.82203 0.84125 0.85598 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -20.84 13.29 55.43 0.74 -20.10 16 2 C 0.07 1.60 4.94 -17.82 -0.09 1.51 16 3 Si 0.90 18.88 29.54 -169.99 -5.02 13.86 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.54 -12.57 6.15 -34.44 -0.21 -12.78 16 8 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.21 4.54 4.80 -5.20 -0.02 4.51 16 10 N -0.59 -11.79 2.56 -195.19 -0.50 -12.29 16 11 C 0.15 2.56 5.67 -4.04 -0.02 2.54 16 12 C -0.16 -2.45 5.98 -90.61 -0.54 -3.00 16 13 C -0.17 -2.38 10.18 -26.73 -0.27 -2.65 16 14 C -0.18 -2.20 10.25 -26.73 -0.27 -2.48 16 15 C 0.57 11.95 7.32 -12.44 -0.09 11.86 16 16 O -0.57 -12.72 16.09 5.29 0.09 -12.63 16 17 C -0.14 -2.80 5.81 -104.96 -0.61 -3.41 16 18 C -0.11 -2.31 6.99 -39.22 -0.27 -2.59 16 19 C -0.15 -2.93 8.33 -39.49 -0.33 -3.26 16 20 C 0.08 1.47 4.79 -39.01 -0.19 1.29 16 21 O -0.25 -4.17 10.00 -2.50 -0.03 -4.19 16 22 C 0.17 2.53 6.61 -38.81 -0.26 2.27 16 23 C -0.24 -3.55 8.89 -39.29 -0.35 -3.90 16 24 C 0.13 1.78 11.17 -17.59 -0.20 1.59 16 25 N -0.51 -6.95 10.36 -13.33 -0.14 -7.09 16 26 C 0.13 1.48 11.17 -17.59 -0.20 1.29 16 27 C -0.21 -2.57 10.08 -39.29 -0.40 -2.97 16 28 C -0.16 -2.55 9.97 -39.49 -0.39 -2.95 16 29 C -0.05 -0.96 9.58 -39.22 -0.38 -1.33 16 30 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 31 H 0.05 1.04 7.86 -51.93 -0.41 0.63 16 32 H 0.05 1.16 5.47 -51.93 -0.28 0.88 16 33 H 0.08 1.34 7.94 -51.93 -0.41 0.93 16 34 H 0.08 1.33 7.20 -51.93 -0.37 0.96 16 35 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 36 H 0.10 1.36 8.04 -51.93 -0.42 0.94 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.27 5.77 1.05 -125.81 -0.13 5.64 16 41 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 42 H 0.15 2.20 6.24 -52.49 -0.33 1.88 16 43 H 0.16 1.72 8.06 -52.48 -0.42 1.30 16 44 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 45 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 46 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 47 H 0.13 2.19 7.75 -52.49 -0.41 1.78 16 LS Contribution 392.36 15.07 5.91 5.91 Total: -1.00 -26.38 392.36 -10.15 -36.53 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -6.11 Total: 14.45 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -5.09 Total: -14.45 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.10 Total: -39.48 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: 0.06 Total: -16.83 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -26.38 -10.15 -36.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079310150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.248 kcal (2) G-P(sol) polarization free energy of solvation -26.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds