Wall clock time and date at job start Tue Mar 31 2020 05:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38267 * 119.99902 * 2 1 4 4 C 1.38210 * 119.99793 * 180.23121 * 3 2 1 5 5 C 1.38258 * 120.00189 * 359.81736 * 4 3 2 6 6 C 1.38211 * 120.00132 * 359.97438 * 5 4 3 7 7 C 1.38213 * 120.00437 * 179.79375 * 2 1 3 8 8 C 1.50703 * 119.99721 * 359.97438 * 7 2 1 9 9 N 1.46498 * 109.47127 * 174.71460 * 8 7 2 10 10 C 1.46496 * 120.00009 * 274.94920 * 9 8 7 11 11 C 1.34779 * 119.99990 * 94.94795 * 9 8 7 12 12 O 1.21373 * 119.99960 * 356.56582 * 11 9 8 13 13 C 1.49269 * 119.99887 * 176.56208 * 11 9 8 14 14 O 1.21386 * 120.00057 * 6.01112 * 13 11 9 15 15 N 1.34777 * 119.99889 * 186.00490 * 13 11 9 16 16 C 1.38947 * 120.00287 * 185.32332 * 15 13 11 17 17 C 1.39568 * 119.84146 * 214.50076 * 16 15 13 18 18 C 1.36321 * 120.16154 * 179.71856 * 17 16 15 19 19 C 1.40911 * 119.83476 * 0.56934 * 18 17 16 20 20 C 1.41069 * 120.16178 * 179.67814 * 19 18 17 21 21 H 1.08002 * 120.00328 * 214.51198 * 20 19 18 22 22 C 1.39980 * 119.99767 * 34.50808 * 20 19 18 23 23 N 1.30823 * 120.00227 * 5.38998 * 22 20 19 24 24 Si 1.86803 * 120.00115 * 185.38341 * 22 20 19 25 25 H 1.48501 * 109.46789 * 90.00105 * 24 22 20 26 26 H 1.48500 * 109.47336 * 210.00223 * 24 22 20 27 27 H 1.48500 * 109.46881 * 330.00529 * 24 22 20 28 28 C 1.40915 * 119.68490 * 359.70289 * 19 18 17 29 29 C 1.36331 * 119.83138 * 359.97438 * 28 19 18 30 30 H 1.09004 * 109.47390 * 275.12819 * 1 2 3 31 31 H 1.09002 * 109.47495 * 35.13359 * 1 2 3 32 32 H 1.09006 * 109.47070 * 155.13157 * 1 2 3 33 33 H 1.07997 * 119.99956 * 0.06635 * 3 2 1 34 34 H 1.07996 * 119.99732 * 179.83383 * 4 3 2 35 35 H 1.07996 * 120.00003 * 179.97438 * 5 4 3 36 36 H 1.07997 * 120.00464 * 180.02562 * 6 5 4 37 37 H 1.09005 * 109.46954 * 294.71788 * 8 7 2 38 38 H 1.09000 * 109.47140 * 54.71128 * 8 7 2 39 39 H 1.09000 * 109.47233 * 95.94406 * 10 9 8 40 40 H 1.09000 * 109.47140 * 215.93928 * 10 9 8 41 41 H 1.08997 * 109.47140 * 335.94518 * 10 9 8 42 42 H 0.97006 * 120.00081 * 5.33054 * 15 13 11 43 43 H 1.08002 * 119.91425 * 359.97438 * 17 16 15 44 44 H 1.08008 * 120.08171 * 180.26971 * 18 17 16 45 45 H 0.97001 * 120.00443 * 179.97438 * 23 22 20 46 46 H 1.07997 * 120.09102 * 179.97438 * 28 19 18 47 47 H 1.07996 * 119.91869 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0048 5 6 4.2717 0.0001 -0.0058 6 6 3.5807 -1.1969 -0.0015 7 6 2.1981 -1.1969 0.0043 8 6 1.4446 -2.5020 0.0096 9 7 2.3915 -3.6131 -0.1138 10 6 2.8467 -4.0440 -1.4379 11 6 2.8439 -4.2387 0.9910 12 8 2.5159 -3.8423 2.0902 13 6 3.7482 -5.4193 0.8625 14 8 4.1639 -5.7495 -0.2291 15 7 4.1034 -6.1186 1.9586 16 6 5.0310 -7.1479 1.8557 17 6 4.9061 -8.2787 2.6642 18 6 5.8093 -9.2950 2.5646 19 6 6.8776 -9.1964 1.6511 20 6 7.8200 -10.2410 1.5473 21 1 8.8548 -10.0157 1.3354 22 6 7.4140 -11.5695 1.7189 23 7 6.1455 -11.8515 1.8706 24 14 8.6833 -12.9400 1.7313 25 1 9.1549 -13.1653 3.1213 26 1 8.0702 -14.1873 1.2082 27 1 9.8338 -12.5568 0.8742 28 6 7.0005 -8.0491 0.8422 29 6 6.0861 -7.0436 0.9480 30 1 -0.3634 0.0919 1.0236 31 1 -0.3634 0.8404 -0.5914 32 1 -0.3633 -0.9324 -0.4322 33 1 1.6582 2.1327 0.0011 34 1 4.1203 2.1327 -0.0075 35 1 5.3516 0.0001 -0.0100 36 1 4.1206 -2.1322 -0.0019 37 1 0.8911 -2.5983 0.9437 38 1 0.7485 -2.5231 -0.8289 39 1 3.7997 -3.5673 -1.6674 40 1 2.9711 -5.1268 -1.4447 41 1 2.1080 -3.7583 -2.1867 42 1 3.7112 -5.9033 2.8194 43 1 4.0896 -8.3505 3.3674 44 1 5.7089 -10.1714 3.1878 45 1 5.8640 -12.7721 1.9892 46 1 7.8170 -7.9665 0.1402 47 1 6.1791 -6.1635 0.3290 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080252811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:06 Heat of formation + Delta-G solvation = -5.787927 kcal Electronic energy + Delta-G solvation = -29820.426652 eV Core-core repulsion = 25740.463095 eV Total energy + Delta-G solvation = -4079.963557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.93241 -39.73246 -38.60792 -37.25557 -36.09216 -34.49977 -33.28344 -32.95370 -31.55267 -29.70175 -29.13020 -28.03038 -26.95966 -26.72548 -25.28888 -23.45221 -22.13153 -21.48578 -21.06155 -20.43259 -19.43305 -17.71813 -17.37725 -17.11288 -16.92238 -16.20044 -15.77078 -15.59115 -15.22377 -15.20268 -14.66932 -14.37812 -14.26420 -13.97864 -13.72274 -13.34914 -13.26178 -12.98054 -12.86786 -12.78900 -12.72527 -12.56332 -12.48138 -12.14753 -11.99060 -11.86913 -11.45066 -11.26587 -11.21988 -11.21437 -11.14557 -11.05760 -10.77458 -9.93406 -9.58787 -9.48563 -9.14226 -9.05886 -8.97066 -8.80925 -8.75958 -7.64943 -6.98281 -6.73733 -4.40216 1.13272 1.20569 1.52270 2.41999 2.67195 3.00707 3.06402 3.07853 3.11177 3.50902 3.54836 3.72907 3.92243 4.49543 4.60151 4.61921 4.65604 4.70885 4.83927 4.95534 5.06702 5.13436 5.22079 5.33463 5.35475 5.47913 5.53846 5.56731 5.62204 5.82849 5.86719 5.97262 6.11001 6.13373 6.28316 6.29006 6.34808 6.46472 6.63825 6.74868 6.81141 6.94784 6.97625 7.08481 7.17681 7.46422 7.53687 7.65667 7.83956 7.97020 8.12193 8.19541 8.44141 8.56486 8.82659 8.89314 10.20650 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.001914 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.423819 B =14623.699606 C =14967.305157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.083 4.083 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.101 4.101 7 C -0.099 4.099 8 C 0.153 3.847 9 N -0.589 5.589 10 C 0.064 3.936 11 C 0.509 3.491 12 O -0.522 6.522 13 C 0.486 3.514 14 O -0.508 6.508 15 N -0.611 5.611 16 C -0.009 4.009 17 C -0.110 4.110 18 C -0.140 4.140 19 C 0.109 3.891 20 C -0.460 4.460 21 H 0.078 0.922 22 C 0.071 3.929 23 N -0.804 5.804 24 Si 0.914 3.086 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.263 1.263 28 C -0.207 4.207 29 C -0.076 4.076 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.113 0.887 41 H 0.063 0.937 42 H 0.407 0.593 43 H 0.094 0.906 44 H 0.123 0.877 45 H 0.280 0.720 46 H 0.098 0.902 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.057 19.409 -4.053 22.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.083 4.083 3 C -0.139 4.139 4 C -0.138 4.138 5 C -0.140 4.140 6 C -0.119 4.119 7 C -0.100 4.100 8 C 0.030 3.970 9 N -0.323 5.323 10 C -0.077 4.077 11 C 0.292 3.708 12 O -0.397 6.397 13 C 0.268 3.732 14 O -0.386 6.386 15 N -0.254 5.254 16 C -0.101 4.101 17 C -0.130 4.130 18 C -0.160 4.160 19 C 0.107 3.893 20 C -0.490 4.490 21 H 0.097 0.903 22 C -0.145 4.145 23 N -0.430 5.430 24 Si 0.739 3.261 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.187 1.187 28 C -0.227 4.227 29 C -0.096 4.096 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.131 0.869 41 H 0.082 0.918 42 H 0.242 0.758 43 H 0.112 0.888 44 H 0.140 0.860 45 H 0.091 0.909 46 H 0.116 0.884 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.099 19.179 -4.218 22.082 hybrid contribution 0.339 -0.470 0.288 0.647 sum -9.760 18.709 -3.930 21.464 Atomic orbital electron populations 1.20839 0.91169 1.02852 1.02586 1.19640 0.95948 0.92346 1.00398 1.20962 0.94256 0.97246 1.01390 1.21124 0.94330 0.97978 1.00374 1.21157 1.00001 0.92451 1.00430 1.21033 0.93656 0.98337 0.98858 1.20075 0.94304 0.94458 1.01184 1.20507 0.90395 0.82118 1.03939 1.47633 1.44701 1.32510 1.07424 1.22484 0.99349 1.04623 0.81279 1.20418 0.81718 0.84257 0.84417 1.90742 1.57354 1.65990 1.25663 1.19833 0.83276 0.84686 0.85382 1.90668 1.54383 1.68359 1.25171 1.42708 1.40673 1.32027 1.10020 1.17185 0.94149 0.90699 1.08062 1.20277 0.99612 0.92937 1.00181 1.20932 0.97184 0.97607 1.00301 1.17719 0.92057 0.91324 0.88229 1.19539 0.96321 0.90457 1.42718 0.90343 1.25910 0.95863 1.00302 0.92457 1.69760 1.15742 1.21374 1.36126 0.86214 0.80995 0.79524 0.79380 1.19383 1.20290 1.18657 1.20758 1.01615 0.97205 1.03083 1.20236 0.93175 0.98465 0.97700 0.90887 0.91409 0.91425 0.86119 0.86183 0.86097 0.86196 0.88091 0.88815 0.92193 0.86883 0.91785 0.75762 0.88783 0.85969 0.90884 0.88365 0.88022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 9.68 36.00 0.35 -0.43 16 2 C -0.08 -0.78 5.88 -104.62 -0.62 -1.39 16 3 C -0.12 -1.08 9.72 -39.58 -0.38 -1.46 16 4 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 5 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 6 C -0.10 -1.21 9.14 -39.58 -0.36 -1.57 16 7 C -0.10 -1.08 5.87 -104.62 -0.61 -1.70 16 8 C 0.15 1.56 4.67 -5.19 -0.02 1.54 16 9 N -0.59 -7.31 1.71 -183.54 -0.31 -7.63 16 10 C 0.06 0.73 9.18 59.84 0.55 1.28 16 11 C 0.51 7.80 7.14 -11.67 -0.08 7.72 16 12 O -0.52 -8.77 16.04 5.48 0.09 -8.68 16 13 C 0.49 8.57 7.48 -11.67 -0.09 8.48 16 14 O -0.51 -9.74 10.89 5.47 0.06 -9.68 16 15 N -0.61 -11.24 5.28 -10.20 -0.05 -11.29 16 16 C -0.01 -0.19 6.26 -83.64 -0.52 -0.71 16 17 C -0.11 -2.47 9.90 -39.78 -0.39 -2.86 16 18 C -0.14 -3.51 8.57 -39.26 -0.34 -3.85 16 19 C 0.11 2.85 5.50 -106.80 -0.59 2.26 16 20 C -0.46 -11.93 9.02 -37.86 -0.34 -12.27 16 21 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 22 C 0.07 1.76 5.31 -17.33 -0.09 1.66 16 23 N -0.80 -20.50 10.96 55.55 0.61 -19.89 16 24 Si 0.91 18.48 29.56 -169.99 -5.03 13.45 16 25 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 26 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 28 C -0.21 -5.04 9.74 -39.26 -0.38 -5.42 16 29 C -0.08 -1.74 8.56 -39.77 -0.34 -2.08 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 32 H 0.07 0.39 6.32 -51.93 -0.33 0.06 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 1.58 5.85 -52.49 -0.31 1.27 16 37 H 0.10 1.09 7.33 -51.93 -0.38 0.71 16 38 H 0.09 0.71 7.01 -51.93 -0.36 0.35 16 39 H 0.06 0.69 7.65 -51.93 -0.40 0.29 16 40 H 0.11 1.53 5.36 -51.93 -0.28 1.26 16 41 H 0.06 0.55 7.88 -51.93 -0.41 0.14 16 42 H 0.41 6.62 8.32 -40.82 -0.34 6.28 16 43 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 44 H 0.12 3.15 6.47 -52.48 -0.34 2.81 16 45 H 0.28 6.53 8.30 -40.82 -0.34 6.20 16 46 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 47 H 0.10 2.24 6.50 -52.49 -0.34 1.90 16 LS Contribution 388.86 15.07 5.86 5.86 Total: -1.00 -29.43 388.86 -9.83 -39.26 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -5.99 Total: 12.63 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -5.07 Total: -14.03 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.24 Total: -38.81 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.15 Total: -18.37 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.43 -9.83 -39.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080252811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.470 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds