Wall clock time and date at job start Tue Mar 31 2020 05:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38267 * 119.99902 * 2 1 4 4 C 1.38210 * 119.99793 * 180.23121 * 3 2 1 5 5 C 1.38258 * 120.00189 * 359.81736 * 4 3 2 6 6 C 1.38211 * 120.00132 * 359.97438 * 5 4 3 7 7 C 1.38213 * 120.00437 * 179.79375 * 2 1 3 8 8 C 1.50703 * 119.99721 * 359.97438 * 7 2 1 9 9 N 1.46498 * 109.47127 * 174.71460 * 8 7 2 10 10 C 1.46496 * 120.00009 * 274.94920 * 9 8 7 11 11 C 1.34779 * 119.99990 * 94.94795 * 9 8 7 12 12 O 1.21373 * 119.99960 * 356.56582 * 11 9 8 13 13 C 1.49269 * 119.99887 * 176.56208 * 11 9 8 14 14 O 1.21386 * 120.00057 * 6.01112 * 13 11 9 15 15 N 1.34777 * 119.99889 * 186.00490 * 13 11 9 16 16 C 1.38947 * 120.00287 * 185.32332 * 15 13 11 17 17 C 1.39568 * 119.84146 * 214.50076 * 16 15 13 18 18 C 1.36321 * 120.16154 * 179.71856 * 17 16 15 19 19 C 1.40911 * 119.83476 * 0.56934 * 18 17 16 20 20 C 1.41069 * 120.16178 * 179.67814 * 19 18 17 21 21 H 1.08002 * 120.00328 * 214.51198 * 20 19 18 22 22 C 1.39980 * 119.99767 * 34.50808 * 20 19 18 23 23 N 1.30823 * 120.00227 * 5.38998 * 22 20 19 24 24 Si 1.86803 * 120.00115 * 185.38341 * 22 20 19 25 25 H 1.48501 * 109.46789 * 90.00105 * 24 22 20 26 26 H 1.48500 * 109.47336 * 210.00223 * 24 22 20 27 27 H 1.48500 * 109.46881 * 330.00529 * 24 22 20 28 28 C 1.40915 * 119.68490 * 359.70289 * 19 18 17 29 29 C 1.36331 * 119.83138 * 359.97438 * 28 19 18 30 30 H 1.09004 * 109.47390 * 275.12819 * 1 2 3 31 31 H 1.09002 * 109.47495 * 35.13359 * 1 2 3 32 32 H 1.09006 * 109.47070 * 155.13157 * 1 2 3 33 33 H 1.07997 * 119.99956 * 0.06635 * 3 2 1 34 34 H 1.07996 * 119.99732 * 179.83383 * 4 3 2 35 35 H 1.07996 * 120.00003 * 179.97438 * 5 4 3 36 36 H 1.07997 * 120.00464 * 180.02562 * 6 5 4 37 37 H 1.09005 * 109.46954 * 294.71788 * 8 7 2 38 38 H 1.09000 * 109.47140 * 54.71128 * 8 7 2 39 39 H 1.09000 * 109.47233 * 95.94406 * 10 9 8 40 40 H 1.09000 * 109.47140 * 215.93928 * 10 9 8 41 41 H 1.08997 * 109.47140 * 335.94518 * 10 9 8 42 42 H 0.97006 * 120.00081 * 5.33054 * 15 13 11 43 43 H 1.08002 * 119.91425 * 359.97438 * 17 16 15 44 44 H 1.08008 * 120.08171 * 180.26971 * 18 17 16 45 45 H 0.97001 * 120.00443 * 179.97438 * 23 22 20 46 46 H 1.07997 * 120.09102 * 179.97438 * 28 19 18 47 47 H 1.07996 * 119.91869 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0048 5 6 4.2717 0.0001 -0.0058 6 6 3.5807 -1.1969 -0.0015 7 6 2.1981 -1.1969 0.0043 8 6 1.4446 -2.5020 0.0096 9 7 2.3915 -3.6131 -0.1138 10 6 2.8467 -4.0440 -1.4379 11 6 2.8439 -4.2387 0.9910 12 8 2.5159 -3.8423 2.0902 13 6 3.7482 -5.4193 0.8625 14 8 4.1639 -5.7495 -0.2291 15 7 4.1034 -6.1186 1.9586 16 6 5.0310 -7.1479 1.8557 17 6 4.9061 -8.2787 2.6642 18 6 5.8093 -9.2950 2.5646 19 6 6.8776 -9.1964 1.6511 20 6 7.8200 -10.2410 1.5473 21 1 8.8548 -10.0157 1.3354 22 6 7.4140 -11.5695 1.7189 23 7 6.1455 -11.8515 1.8706 24 14 8.6833 -12.9400 1.7313 25 1 9.1549 -13.1653 3.1213 26 1 8.0702 -14.1873 1.2082 27 1 9.8338 -12.5568 0.8742 28 6 7.0005 -8.0491 0.8422 29 6 6.0861 -7.0436 0.9480 30 1 -0.3634 0.0919 1.0236 31 1 -0.3634 0.8404 -0.5914 32 1 -0.3633 -0.9324 -0.4322 33 1 1.6582 2.1327 0.0011 34 1 4.1203 2.1327 -0.0075 35 1 5.3516 0.0001 -0.0100 36 1 4.1206 -2.1322 -0.0019 37 1 0.8911 -2.5983 0.9437 38 1 0.7485 -2.5231 -0.8289 39 1 3.7997 -3.5673 -1.6674 40 1 2.9711 -5.1268 -1.4447 41 1 2.1080 -3.7583 -2.1867 42 1 3.7112 -5.9033 2.8194 43 1 4.0896 -8.3505 3.3674 44 1 5.7089 -10.1714 3.1878 45 1 5.8640 -12.7721 1.9892 46 1 7.8170 -7.9665 0.1402 47 1 6.1791 -6.1635 0.3290 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080252811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:05 Heat of formation + Delta-G solvation = -19.745280 kcal Electronic energy + Delta-G solvation = -29821.031888 eV Core-core repulsion = 25740.463095 eV Total energy + Delta-G solvation = -4080.568794 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.20083 -40.78217 -39.88421 -38.91750 -37.26209 -36.10151 -34.72529 -33.96456 -32.36255 -31.56127 -30.94292 -28.85772 -28.10360 -27.53726 -26.81955 -24.80265 -23.43864 -22.86988 -22.26801 -21.71203 -20.79571 -19.29319 -18.99174 -18.35751 -17.89253 -17.64235 -17.04575 -16.81181 -16.69408 -16.08748 -15.82812 -15.74537 -15.45719 -15.08152 -14.83246 -14.74376 -14.47612 -14.31456 -14.02381 -13.96188 -13.72190 -13.68075 -13.64009 -13.40569 -13.21771 -13.08345 -12.90184 -12.82198 -12.73364 -12.46049 -12.36632 -11.96427 -11.93271 -11.69586 -11.43028 -11.25814 -10.85542 -10.38843 -9.98406 -9.72919 -9.52710 -9.49335 -8.82483 -8.57152 -6.34330 0.13875 0.39532 0.44568 0.90224 1.09958 1.25788 1.40723 1.49714 1.54279 2.08680 2.23369 2.47066 2.77084 2.80188 3.28583 3.65193 3.74149 3.92484 4.01524 4.11700 4.19943 4.29030 4.33938 4.39758 4.42062 4.48532 4.65069 4.65530 4.81847 4.83687 4.87332 4.94758 4.95785 5.04317 5.08860 5.12389 5.17806 5.26781 5.33465 5.35507 5.55737 5.59978 5.61544 5.66816 5.75100 5.84417 5.93686 6.06102 6.09487 6.30125 6.35644 6.62216 6.66746 6.89814 6.92302 7.06509 8.39010 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.001914 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.423819 B =14623.699606 C =14967.305157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.085 4.085 3 C -0.124 4.124 4 C -0.123 4.123 5 C -0.139 4.139 6 C -0.125 4.125 7 C -0.112 4.112 8 C 0.152 3.848 9 N -0.576 5.576 10 C 0.066 3.934 11 C 0.514 3.486 12 O -0.539 6.539 13 C 0.488 3.512 14 O -0.523 6.523 15 N -0.613 5.613 16 C 0.007 3.993 17 C -0.110 4.110 18 C -0.157 4.157 19 C 0.078 3.922 20 C -0.495 4.495 21 H 0.077 0.923 22 C 0.030 3.970 23 N -0.836 5.836 24 Si 0.987 3.013 25 H -0.261 1.261 26 H -0.270 1.270 27 H -0.260 1.260 28 C -0.218 4.218 29 C -0.083 4.083 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.128 0.872 39 H 0.056 0.944 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.419 0.581 43 H 0.122 0.878 44 H 0.109 0.891 45 H 0.287 0.713 46 H 0.102 0.898 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.781 21.236 -4.640 24.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.086 4.086 3 C -0.141 4.141 4 C -0.141 4.141 5 C -0.157 4.157 6 C -0.143 4.143 7 C -0.113 4.113 8 C 0.031 3.969 9 N -0.308 5.308 10 C -0.076 4.076 11 C 0.296 3.704 12 O -0.416 6.416 13 C 0.271 3.729 14 O -0.401 6.401 15 N -0.258 5.258 16 C -0.086 4.086 17 C -0.130 4.130 18 C -0.177 4.177 19 C 0.076 3.924 20 C -0.526 4.526 21 H 0.095 0.905 22 C -0.183 4.183 23 N -0.463 5.463 24 Si 0.808 3.192 25 H -0.186 1.186 26 H -0.195 1.195 27 H -0.184 1.184 28 C -0.238 4.238 29 C -0.103 4.103 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.165 0.835 34 H 0.159 0.841 35 H 0.143 0.857 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.145 0.855 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.256 0.744 43 H 0.140 0.860 44 H 0.127 0.873 45 H 0.097 0.903 46 H 0.120 0.880 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.850 21.051 -4.826 24.634 hybrid contribution 0.751 -0.798 0.398 1.166 sum -11.099 20.253 -4.428 23.515 Atomic orbital electron populations 1.20908 0.89029 1.04163 1.03281 1.19983 0.97542 0.91808 0.99246 1.21349 0.94267 0.98276 1.00258 1.21428 0.94929 0.98249 0.99513 1.21326 1.00514 0.92798 1.01076 1.21013 0.94454 0.98017 1.00842 1.20167 0.93911 0.95301 1.01953 1.20756 0.90024 0.80894 1.05228 1.47682 1.43944 1.32251 1.06890 1.22474 1.00514 1.03130 0.81453 1.19882 0.81605 0.83808 0.85077 1.90739 1.58124 1.66443 1.26327 1.20333 0.82992 0.84843 0.84736 1.90682 1.54800 1.68816 1.25775 1.42640 1.40481 1.31568 1.11127 1.17224 0.93918 0.90992 1.06454 1.20502 0.99694 0.92278 1.00572 1.20904 0.98076 0.98110 1.00585 1.18036 0.93037 0.92174 0.89182 1.19763 0.96396 0.91593 1.44809 0.90507 1.26750 0.97853 1.02222 0.91480 1.69820 1.17398 1.22293 1.36808 0.85124 0.78201 0.76266 0.79623 1.18554 1.19466 1.18411 1.20900 1.02259 0.97423 1.03266 1.20356 0.93313 0.98401 0.98251 0.90446 0.89765 0.90459 0.83550 0.84054 0.85690 0.88251 0.88449 0.85452 0.92530 0.89034 0.88218 0.74385 0.86010 0.87262 0.90250 0.87966 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.68 71.23 0.69 -0.45 16 2 C -0.09 -1.37 5.88 -19.87 -0.12 -1.49 16 3 C -0.12 -1.87 9.72 22.27 0.22 -1.65 16 4 C -0.12 -2.07 10.05 22.27 0.22 -1.84 16 5 C -0.14 -2.89 10.05 22.27 0.22 -2.67 16 6 C -0.12 -2.95 9.14 22.27 0.20 -2.75 16 7 C -0.11 -2.26 5.87 -19.86 -0.12 -2.37 16 8 C 0.15 2.77 4.67 85.63 0.40 3.17 16 9 N -0.58 -13.51 1.71 -852.94 -1.46 -14.97 16 10 C 0.07 1.40 9.18 127.77 1.17 2.57 16 11 C 0.51 15.40 7.14 87.21 0.62 16.02 16 12 O -0.54 -17.68 16.04 -3.32 -0.05 -17.74 16 13 C 0.49 17.06 7.48 87.21 0.65 17.71 16 14 O -0.52 -20.06 10.89 -3.36 -0.04 -20.10 16 15 N -0.61 -22.29 5.28 -304.53 -1.61 -23.89 16 16 C 0.01 0.32 6.26 38.66 0.24 0.56 16 17 C -0.11 -4.98 9.90 22.14 0.22 -4.77 16 18 C -0.16 -8.09 8.57 22.48 0.19 -7.90 16 19 C 0.08 4.22 5.50 -21.27 -0.12 4.11 16 20 C -0.50 -26.61 9.02 23.39 0.21 -26.40 16 21 H 0.08 3.97 7.85 -2.91 -0.02 3.95 16 22 C 0.03 1.52 5.31 85.27 0.45 1.97 16 23 N -0.84 -43.68 10.96 21.83 0.24 -43.44 16 24 Si 0.99 38.30 29.56 68.60 2.03 40.33 16 25 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 26 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 27 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 28 C -0.22 -11.01 9.74 22.48 0.22 -10.80 16 29 C -0.08 -3.89 8.56 22.15 0.19 -3.70 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.56 8.12 -2.39 -0.02 0.54 16 32 H 0.08 0.59 6.32 -2.38 -0.02 0.58 16 33 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 34 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 35 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 36 H 0.10 2.67 5.85 -2.91 -0.02 2.66 16 37 H 0.10 1.90 7.33 -2.38 -0.02 1.88 16 38 H 0.13 1.46 7.01 -2.39 -0.02 1.44 16 39 H 0.06 1.26 7.65 -2.39 -0.02 1.25 16 40 H 0.09 2.42 5.36 -2.46 -0.01 2.41 16 41 H 0.10 1.42 7.88 -2.39 -0.02 1.40 16 42 H 0.42 13.29 8.32 -92.70 -0.77 12.52 16 43 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 44 H 0.11 5.85 6.47 -2.91 -0.02 5.83 16 45 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 46 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 47 H 0.11 4.85 6.50 -2.91 -0.02 4.83 16 Total: -1.00 -65.45 388.86 5.14 -60.31 By element: Atomic # 1 Polarization: 39.93 SS G_CDS: 0.25 Total: 40.18 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 5.78 Total: -20.67 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -2.82 Total: -82.30 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.09 Total: -37.84 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -65.45 5.14 -60.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080252811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.561 kcal (2) G-P(sol) polarization free energy of solvation -65.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds