Wall clock time and date at job start Tue Mar 31 2020 05:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 120.00461 * 2 1 4 4 H 1.48500 * 109.47362 * 270.00317 * 3 2 1 5 5 H 1.48504 * 109.46860 * 30.00229 * 3 2 1 6 6 H 1.48496 * 109.47387 * 149.99892 * 3 2 1 7 7 C 1.38803 * 119.99449 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00395 * 0.02562 * 7 2 1 9 9 S 1.76204 * 119.99796 * 179.97438 * 7 2 1 10 10 C 1.80995 * 100.00106 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47177 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46988 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.46759 * 180.02562 * 12 11 10 14 14 C 1.46899 * 110.99754 * 169.99962 * 13 12 11 15 15 C 1.53238 * 109.33930 * 187.25000 * 14 13 12 16 16 N 1.47079 * 108.52257 * 306.16828 * 15 14 13 17 17 C 1.34769 * 120.88560 * 231.18386 * 16 15 14 18 18 O 1.21580 * 119.99967 * 5.88310 * 17 16 15 19 19 C 1.47691 * 120.00299 * 185.87839 * 17 16 15 20 20 C 1.39659 * 120.16897 * 53.45544 * 19 17 16 21 21 C 1.37849 * 119.88177 * 179.72197 * 20 19 17 22 22 C 1.38455 * 120.21819 * 0.02562 * 21 20 19 23 23 C 1.38200 * 120.34158 * 359.97438 * 22 21 20 24 24 C 1.38322 * 120.11677 * 359.97438 * 23 22 21 25 25 F 1.35103 * 120.11194 * 179.97438 * 24 23 22 26 26 C 1.47083 * 118.23499 * 51.46259 * 16 15 14 27 27 C 1.46897 * 110.99929 * 294.29847 * 13 12 11 28 28 H 0.97006 * 119.99599 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47009 * 60.00230 * 10 9 7 30 30 H 1.08993 * 109.47325 * 300.00306 * 10 9 7 31 31 H 1.08995 * 109.46698 * 60.00310 * 11 10 9 32 32 H 1.08993 * 109.47353 * 300.00423 * 11 10 9 33 33 H 1.08994 * 109.46816 * 60.00510 * 12 11 10 34 34 H 1.09002 * 109.46986 * 300.00404 * 12 11 10 35 35 H 1.09010 * 109.49283 * 67.29268 * 14 13 12 36 36 H 1.09001 * 109.49423 * 307.21351 * 14 13 12 37 37 H 1.08998 * 109.62515 * 186.46241 * 15 14 13 38 38 H 1.09002 * 109.62826 * 65.88307 * 15 14 13 39 39 H 1.08000 * 120.05708 * 359.74788 * 20 19 17 40 40 H 1.08004 * 119.88645 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.83247 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.94304 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.63052 * 68.24420 * 26 16 15 44 44 H 1.08992 * 109.62956 * 188.83225 * 26 16 15 45 45 H 1.09001 * 109.49399 * 292.71081 * 27 13 12 46 46 H 1.09001 * 109.49038 * 52.79065 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7722 -1.2022 -0.0001 10 6 4.0865 -2.9847 0.0017 11 6 5.5956 -3.2366 0.0008 12 6 5.8612 -4.7434 0.0017 13 7 7.3102 -4.9851 0.0014 14 6 7.6072 -6.4038 0.2404 15 6 9.1192 -6.5837 0.4128 16 7 9.7957 -5.9945 -0.7527 17 6 10.7110 -6.6967 -1.4494 18 8 10.9100 -7.8665 -1.1848 19 6 11.4722 -6.0452 -2.5345 20 6 12.1683 -4.8595 -2.2895 21 6 12.8816 -4.2595 -3.3052 22 6 12.9097 -4.8283 -4.5672 23 6 12.2242 -6.0014 -4.8197 24 6 11.5049 -6.6159 -3.8106 25 9 10.8343 -7.7624 -4.0577 26 6 9.4513 -4.6163 -1.1340 27 6 7.9219 -4.5160 -1.2490 28 1 -0.4850 0.8401 -0.0004 29 1 3.6432 -3.4327 -0.8876 30 1 3.6438 -3.4308 0.8923 31 1 6.0392 -2.7885 0.8899 32 1 6.0379 -2.7906 -0.8900 33 1 5.4176 -5.1910 -0.8876 34 1 5.4188 -5.1897 0.8924 35 1 7.2650 -6.9952 -0.6090 36 1 7.0960 -6.7352 1.1444 37 1 9.3567 -7.6456 0.4759 38 1 9.4469 -6.0777 1.3210 39 1 12.1481 -4.4137 -1.3061 40 1 13.4196 -3.3423 -3.1160 41 1 13.4702 -4.3527 -5.3585 42 1 12.2509 -6.4397 -5.8064 43 1 9.8103 -3.9249 -0.3716 44 1 9.9084 -4.3769 -2.0940 45 1 7.5753 -5.1336 -2.0776 46 1 7.6390 -3.4782 -1.4253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080631071.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:02 Heat of formation + Delta-G solvation = -48.866225 kcal Electronic energy + Delta-G solvation = -27966.942622 eV Core-core repulsion = 23897.094696 eV Total energy + Delta-G solvation = -4069.847926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 352.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.32685 -40.84217 -39.14495 -38.21593 -35.53248 -33.05061 -32.45596 -32.00612 -31.17748 -31.01065 -28.13344 -25.79812 -25.10869 -24.24599 -23.93432 -23.13364 -21.68168 -20.86201 -19.73786 -18.13574 -17.75628 -17.47310 -16.99407 -16.62254 -15.99990 -15.64888 -15.59828 -15.48793 -15.22279 -15.00148 -14.93050 -14.71082 -14.42804 -14.09992 -13.96968 -13.67015 -13.32921 -13.00710 -12.87559 -12.64728 -12.54929 -12.24240 -12.06691 -11.91972 -11.84057 -11.62597 -11.50105 -11.39763 -11.07640 -11.01184 -10.44129 -10.31379 -10.17149 -9.80624 -9.62640 -9.30534 -9.12293 -9.02544 -8.59011 -8.50068 -6.96550 -6.30153 -4.02620 0.31357 0.60487 2.20364 2.50116 2.97467 3.02812 3.27906 3.43199 3.49404 3.66232 3.72475 3.89810 4.18102 4.29638 4.35526 4.52269 4.61342 4.65150 4.69713 4.76734 4.81026 4.89733 5.00494 5.07958 5.08534 5.15296 5.23025 5.39114 5.40760 5.42585 5.44239 5.48125 5.53369 5.58298 5.60026 5.69776 5.76544 5.78393 5.90761 6.06463 6.17507 6.22780 6.42459 6.57727 6.80520 6.83792 6.98495 7.69969 7.93607 8.42678 9.15608 10.79352 Molecular weight = 352.14amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.001935 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.699454 B =14469.370654 C =15409.405731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.091 3.909 3 Si 0.862 3.138 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.237 1.237 7 C -0.502 4.502 8 H 0.088 0.912 9 S -0.215 6.215 10 C -0.083 4.083 11 C -0.097 4.097 12 C 0.060 3.940 13 N -0.536 5.536 14 C 0.041 3.959 15 C 0.117 3.883 16 N -0.605 5.605 17 C 0.563 3.437 18 O -0.528 6.528 19 C -0.163 4.163 20 C -0.060 4.060 21 C -0.133 4.133 22 C -0.070 4.070 23 C -0.158 4.158 24 C 0.144 3.856 25 F -0.126 7.126 26 C 0.109 3.891 27 C 0.035 3.965 28 H 0.270 0.730 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.143 0.857 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.039 0.961 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.216 -10.719 -6.364 30.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.118 4.118 3 Si 0.687 3.313 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.161 1.161 7 C -0.650 4.650 8 H 0.106 0.894 9 S 0.013 5.987 10 C -0.232 4.232 11 C -0.135 4.135 12 C -0.069 4.069 13 N -0.261 5.261 14 C -0.088 4.088 15 C -0.005 4.005 16 N -0.339 5.339 17 C 0.351 3.649 18 O -0.404 6.404 19 C -0.167 4.167 20 C -0.078 4.078 21 C -0.151 4.151 22 C -0.088 4.088 23 C -0.177 4.177 24 C 0.124 3.876 25 F -0.104 7.104 26 C -0.014 4.014 27 C -0.093 4.093 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.160 0.840 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.057 0.943 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 29.023 -10.159 -5.829 31.297 hybrid contribution -1.393 -0.823 -0.796 1.803 sum 27.630 -10.982 -6.625 30.462 Atomic orbital electron populations 1.69942 1.05935 1.27710 1.48265 1.24811 0.94526 0.99048 0.93370 0.86659 0.81762 0.83186 0.79665 1.19411 1.20118 1.16123 1.22123 0.87090 0.97393 1.58379 0.89447 1.84127 1.11692 1.05342 1.97534 1.23012 0.97296 0.99227 1.03637 1.21344 0.94916 0.94064 1.03202 1.22182 0.86024 0.97514 1.01158 1.61949 1.12437 1.17342 1.34359 1.22483 0.95681 0.88860 1.01779 1.21778 0.91043 1.00225 0.87432 1.48103 1.40117 1.15299 1.30346 1.18103 0.79543 0.85833 0.81450 1.90819 1.66434 1.15466 1.67711 1.19961 1.04657 0.98540 0.93553 1.21220 0.94335 0.92047 1.00218 1.21206 1.00115 1.01012 0.92797 1.21235 0.96410 0.93846 0.97345 1.21178 0.99585 0.97626 0.99317 1.17677 0.93747 0.83287 0.92886 1.91570 1.77690 1.46535 1.94581 1.22130 0.95448 0.82192 1.01623 1.22646 0.93529 1.02271 0.90872 0.91975 0.91668 0.91334 0.90534 0.91616 0.94669 0.90371 0.94352 0.89124 0.88573 0.90197 0.84293 0.84404 0.84364 0.83967 0.89869 0.89261 0.94306 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16 2 C 0.09 2.63 5.50 -17.43 -0.10 2.54 16 3 Si 0.86 21.28 27.74 -169.99 -4.71 16.57 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.24 -5.71 6.74 56.52 0.38 -5.33 16 7 C -0.50 -14.43 10.04 30.94 0.31 -14.12 16 8 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 9 S -0.21 -5.12 19.41 -107.50 -2.09 -7.20 16 10 C -0.08 -1.54 5.67 37.16 0.21 -1.33 16 11 C -0.10 -1.38 5.15 -26.73 -0.14 -1.52 16 12 C 0.06 0.72 4.96 -3.82 -0.02 0.70 16 13 N -0.54 -5.65 4.63 -234.02 -1.08 -6.73 16 14 C 0.04 0.39 5.62 -3.70 -0.02 0.37 16 15 C 0.12 1.10 6.61 -3.60 -0.02 1.08 16 16 N -0.61 -5.96 3.00 -173.35 -0.52 -6.48 16 17 C 0.56 6.61 6.91 -12.40 -0.09 6.53 16 18 O -0.53 -8.10 16.28 5.30 0.09 -8.01 16 19 C -0.16 -1.54 4.62 -104.91 -0.48 -2.03 16 20 C -0.06 -0.38 7.82 -39.19 -0.31 -0.69 16 21 C -0.13 -0.62 10.03 -39.64 -0.40 -1.02 16 22 C -0.07 -0.33 10.03 -39.52 -0.40 -0.72 16 23 C -0.16 -1.04 10.01 -39.56 -0.40 -1.44 16 24 C 0.14 1.40 7.27 -38.96 -0.28 1.11 16 25 F -0.13 -1.52 16.64 2.25 0.04 -1.48 16 26 C 0.11 0.87 5.68 -3.36 -0.02 0.85 16 27 C 0.04 0.34 5.48 -3.46 -0.02 0.32 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.06 1.23 8.14 -51.91 -0.42 0.81 16 30 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.92 6.40 -51.93 -0.33 0.59 16 33 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 34 H 0.08 0.90 7.97 -51.93 -0.41 0.49 16 35 H 0.04 0.41 8.14 -51.92 -0.42 -0.02 16 36 H 0.09 0.77 7.99 -51.93 -0.41 0.35 16 37 H 0.10 0.98 7.04 -51.93 -0.37 0.61 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.14 0.67 7.72 -52.49 -0.40 0.27 16 40 H 0.14 0.31 8.06 -52.48 -0.42 -0.11 16 41 H 0.14 0.28 8.06 -52.49 -0.42 -0.15 16 42 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.62 5.53 -51.93 -0.29 0.33 16 45 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.10 0.93 6.16 -51.93 -0.32 0.61 16 LS Contribution 388.47 15.07 5.85 5.85 Total: -1.00 -34.30 388.47 -10.58 -44.88 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.77 Total: -2.19 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -2.16 Total: -9.37 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: -0.83 Total: -39.05 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.09 Total: -8.01 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.71 Total: 16.57 kcal Atomic # 16 Polarization: -5.12 SS G_CDS: -2.09 Total: -7.20 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.30 -10.58 -44.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080631071.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.986 kcal (2) G-P(sol) polarization free energy of solvation -34.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds