Wall clock time and date at job start Tue Mar 31 2020 05:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39728 * 125.77591 * 2 1 4 4 C 1.36150 * 107.85718 * 180.14104 * 3 2 1 5 5 N 1.39379 * 126.26377 * 179.90057 * 4 3 2 6 6 C 1.34779 * 120.00104 * 359.69319 * 5 4 3 7 7 O 1.21567 * 119.99799 * 359.97438 * 6 5 4 8 8 C 1.47806 * 120.00212 * 180.02562 * 6 5 4 9 9 C 1.39617 * 120.14347 * 0.29436 * 8 6 5 10 10 C 1.37930 * 119.84792 * 180.25459 * 9 8 6 11 11 C 1.38387 * 120.14414 * 359.44812 * 10 9 8 12 12 C 1.38335 * 120.29997 * 0.27966 * 11 10 9 13 13 C 1.50695 * 119.92676 * 180.02562 * 12 11 10 14 14 F 1.39900 * 109.47395 * 0.02562 * 13 12 11 15 15 F 1.39905 * 109.47098 * 120.00260 * 13 12 11 16 16 F 1.39898 * 109.47371 * 240.00068 * 13 12 11 17 17 C 1.37980 * 120.14606 * 359.97438 * 12 11 10 18 18 N 1.35812 * 107.47421 * 359.64381 * 4 3 2 19 19 C 1.46497 * 126.09455 * 180.20341 * 18 4 3 20 20 C 1.50698 * 109.46946 * 89.99875 * 19 18 4 21 21 H 1.08000 * 120.00071 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00043 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00204 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99980 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47049 * 89.99826 * 24 22 20 26 26 H 1.48497 * 109.47431 * 209.99749 * 24 22 20 27 27 H 1.48501 * 109.47012 * 330.00211 * 24 22 20 28 28 N 1.30832 * 125.77897 * 179.74025 * 2 1 3 29 29 H 1.08998 * 109.46952 * 270.23324 * 1 2 3 30 30 H 1.09000 * 109.47200 * 30.23683 * 1 2 3 31 31 H 1.08996 * 109.47140 * 150.23500 * 1 2 3 32 32 H 1.07999 * 126.07340 * 0.03408 * 3 2 1 33 33 H 0.96996 * 120.00012 * 179.69495 * 5 4 3 34 34 H 1.07998 * 120.07553 * 359.97438 * 9 8 6 35 35 H 1.08002 * 119.92931 * 179.73254 * 10 9 8 36 36 H 1.08006 * 119.84850 * 180.25881 * 11 10 9 37 37 H 1.07994 * 120.07458 * 179.97438 * 17 12 11 38 38 H 1.08995 * 109.46974 * 209.99788 * 19 18 4 39 39 H 1.08998 * 109.47380 * 330.00027 * 19 18 4 40 40 H 0.96994 * 120.00102 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6194 0.7147 -0.0032 5 7 4.7496 1.5304 -0.0062 6 6 4.6130 2.8712 -0.0124 7 8 3.5040 3.3692 -0.0158 8 6 5.8115 3.7362 -0.0162 9 6 7.0866 3.1675 -0.0196 10 6 8.2008 3.9805 -0.0178 11 6 8.0569 5.3568 -0.0242 12 6 6.7964 5.9268 -0.0266 13 6 6.6495 7.4265 -0.0341 14 9 7.9167 8.0193 -0.0382 15 9 5.9472 7.8205 -1.1781 16 9 5.9482 7.8322 1.1064 17 6 5.6735 5.1251 -0.0231 18 7 3.6089 -0.6433 0.0029 19 6 4.7859 -1.5155 0.0064 20 6 5.1900 -1.8081 1.4284 21 1 4.6267 -1.3862 2.2476 22 6 6.2789 -2.6144 1.6837 23 7 6.6319 -2.8694 2.9247 24 14 7.2529 -3.3447 0.2668 25 1 8.3450 -2.4137 -0.1149 26 1 7.8347 -4.6455 0.6846 27 1 6.3531 -3.5553 -0.8957 28 7 2.2720 -1.0614 0.0048 29 1 -0.3633 0.0042 1.0276 30 1 -0.3633 0.8878 -0.5175 31 1 -0.3633 -0.8920 -0.5102 32 1 1.9875 2.1599 0.0005 33 1 5.6344 1.1331 -0.0039 34 1 7.2002 2.0935 -0.0190 35 1 9.1878 3.5419 -0.0160 36 1 8.9327 5.9889 -0.0270 37 1 4.6900 5.5712 -0.0246 38 1 4.5478 -2.4491 -0.5031 39 1 5.6075 -1.0191 -0.5099 40 1 7.3982 -3.4364 3.1042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084104641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:26 Heat of formation + Delta-G solvation = -75.476622 kcal Electronic energy + Delta-G solvation = -30318.863576 eV Core-core repulsion = 25492.762344 eV Total energy + Delta-G solvation = -4826.101232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.46351 -47.99500 -47.89984 -41.15299 -40.10790 -38.59320 -35.03555 -33.88211 -32.65103 -32.16360 -31.74052 -29.56726 -28.40247 -26.42637 -26.34172 -24.66849 -22.62707 -22.55931 -21.46000 -20.04513 -19.73274 -18.77455 -18.65980 -18.53129 -17.27659 -17.10817 -16.61203 -16.49890 -15.51993 -15.42931 -15.07812 -14.82230 -14.63747 -14.56302 -14.38536 -14.35381 -14.25168 -14.06899 -14.00685 -13.96724 -13.22979 -13.15212 -13.01078 -12.76685 -12.65953 -12.39951 -12.23616 -11.96061 -11.89341 -11.67942 -11.22619 -10.91028 -10.61759 -10.31042 -10.15487 -9.83271 -9.75366 -9.70083 -9.53643 -8.92979 -8.03203 -7.59262 -6.39644 -4.44708 0.23623 0.61213 2.16066 2.27102 2.56311 2.80717 2.99692 3.11451 3.12588 3.27847 3.35301 3.53008 3.55672 3.70948 4.07779 4.10172 4.22683 4.38599 4.55233 4.60823 4.85772 4.86633 5.02880 5.22561 5.36086 5.49636 5.62758 5.71380 5.77464 5.95288 5.98196 6.00656 6.13279 6.19407 6.21493 6.28858 6.55248 6.66887 7.13130 7.33245 7.41342 7.64137 8.02265 8.19363 8.47944 8.66765 9.14490 10.72449 Molecular weight = 353.11amu Principal moments of inertia in cm(-1) A = 0.010417 B = 0.003028 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.276078 B = 9246.298510 C =11381.102113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.286 4.286 4 C 0.301 3.699 5 N -0.633 5.633 6 C 0.566 3.434 7 O -0.504 6.504 8 C -0.126 4.126 9 C -0.052 4.052 10 C -0.122 4.122 11 C -0.048 4.048 12 C -0.194 4.194 13 C 0.512 3.488 14 F -0.177 7.177 15 F -0.174 7.174 16 F -0.173 7.173 17 C -0.008 4.008 18 N -0.345 5.345 19 C 0.230 3.770 20 C -0.548 4.548 21 H 0.082 0.918 22 C 0.081 3.919 23 N -0.881 5.881 24 Si 0.870 3.130 25 H -0.271 1.271 26 H -0.278 1.278 27 H -0.263 1.263 28 N -0.278 5.278 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.164 0.836 33 H 0.414 0.586 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.056 0.944 39 H 0.033 0.967 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.604 17.733 -8.120 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C -0.318 4.318 4 C 0.080 3.920 5 N -0.279 5.279 6 C 0.353 3.647 7 O -0.379 6.379 8 C -0.130 4.130 9 C -0.070 4.070 10 C -0.140 4.140 11 C -0.066 4.066 12 C -0.195 4.195 13 C 0.458 3.542 14 F -0.158 7.158 15 F -0.156 7.156 16 F -0.155 7.155 17 C -0.027 4.027 18 N -0.130 5.130 19 C 0.111 3.889 20 C -0.586 4.586 21 H 0.100 0.900 22 C -0.124 4.124 23 N -0.518 5.518 24 Si 0.696 3.304 25 H -0.197 1.197 26 H -0.203 1.203 27 H -0.187 1.187 28 N -0.103 5.103 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.182 0.818 33 H 0.252 0.748 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.168 0.832 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.136 16.679 -7.994 18.759 hybrid contribution 1.355 0.266 -0.413 1.441 sum 4.491 16.945 -8.407 19.441 Atomic orbital electron populations 1.20048 0.87312 1.02457 1.02404 1.22054 0.96657 0.90865 1.01429 1.21298 0.88928 1.00616 1.20950 1.17947 0.87847 0.83055 1.03181 1.42547 1.08409 1.05377 1.71607 1.17915 0.88913 0.80928 0.76960 1.90736 1.25754 1.73759 1.47653 1.19690 0.93048 0.93405 1.06819 1.21732 0.91513 1.01181 0.92608 1.21168 0.99612 0.92594 1.00621 1.21260 0.96111 0.95959 0.93293 1.19892 0.96128 0.91116 1.12397 1.18172 0.73792 0.88236 0.74032 1.93167 1.40495 1.85913 1.96255 1.93239 1.79177 1.92350 1.50810 1.93244 1.79186 1.92030 1.51016 1.20936 0.98804 0.92003 0.90916 1.49059 1.06195 1.01788 1.55965 1.19938 0.79215 0.90042 0.99707 1.21200 1.14374 1.32723 0.90292 0.90003 1.24824 0.96628 0.95180 0.95777 1.69869 1.26770 1.36560 1.18558 0.86940 0.80736 0.79876 0.82839 1.19654 1.20277 1.18719 1.77359 0.85746 1.21743 1.25455 0.91076 0.90994 0.91447 0.81836 0.74828 0.84128 0.83664 0.83803 0.83215 0.92624 0.94881 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.44 36.01 0.38 -0.53 16 2 C 0.06 1.07 7.20 -82.46 -0.59 0.48 16 3 C -0.29 -5.63 9.58 -39.78 -0.38 -6.01 16 4 C 0.30 6.06 7.68 -152.74 -1.17 4.88 16 5 N -0.63 -10.42 5.36 -12.21 -0.07 -10.49 16 6 C 0.57 8.62 7.74 -12.35 -0.10 8.52 16 7 O -0.50 -8.81 13.47 5.31 0.07 -8.74 16 8 C -0.13 -1.49 5.87 -104.97 -0.62 -2.11 16 9 C -0.05 -0.50 9.54 -39.18 -0.37 -0.87 16 10 C -0.12 -0.93 10.03 -39.64 -0.40 -1.33 16 11 C -0.05 -0.37 9.43 -39.49 -0.37 -0.75 16 12 C -0.19 -1.84 5.37 -104.68 -0.56 -2.40 16 13 C 0.51 4.86 3.31 36.00 0.12 4.98 16 14 F -0.18 -1.57 15.96 2.25 0.04 -1.54 16 15 F -0.17 -1.77 17.23 2.25 0.04 -1.73 16 16 F -0.17 -1.81 17.23 2.25 0.04 -1.77 16 17 C -0.01 -0.08 9.14 -39.18 -0.36 -0.44 16 18 N -0.34 -7.68 3.62 -61.45 -0.22 -7.90 16 19 C 0.23 5.21 5.09 -5.20 -0.03 5.18 16 20 C -0.55 -14.52 9.94 -34.44 -0.34 -14.87 16 21 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 22 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 23 N -0.88 -24.97 13.96 55.43 0.77 -24.20 16 24 Si 0.87 18.78 27.47 -169.99 -4.67 14.11 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.26 -5.47 6.54 56.52 0.37 -5.10 16 28 N -0.28 -6.23 12.56 33.64 0.42 -5.81 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.16 3.11 5.83 -52.49 -0.31 2.80 16 33 H 0.41 6.01 6.03 -40.82 -0.25 5.77 16 34 H 0.14 1.20 6.41 -52.49 -0.34 0.87 16 35 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.14 0.81 7.14 -52.48 -0.37 0.43 16 37 H 0.15 1.64 7.65 -52.49 -0.40 1.24 16 38 H 0.06 1.29 7.20 -51.93 -0.37 0.91 16 39 H 0.03 0.66 6.95 -51.93 -0.36 0.30 16 40 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 359.51 15.07 5.42 5.42 Total: -1.00 -32.09 359.51 -6.73 -38.83 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -3.68 Total: 7.05 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -4.89 Total: -3.23 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.91 Total: -48.39 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.07 Total: -8.74 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.11 Total: -5.04 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.67 Total: 14.11 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.09 -6.73 -38.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084104641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.650 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds