Wall clock time and date at job start Tue Mar 31 2020 05:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39734 * 125.77914 * 2 1 4 4 C 1.36147 * 107.86072 * 180.12875 * 3 2 1 5 5 N 1.39374 * 126.26347 * 179.84874 * 4 3 2 6 6 C 1.34770 * 120.00274 * 359.68947 * 5 4 3 7 7 O 1.21578 * 119.99952 * 0.02562 * 6 5 4 8 8 C 1.47801 * 120.00595 * 180.02562 * 6 5 4 9 9 C 1.39619 * 120.13984 * 359.72026 * 8 6 5 10 10 C 1.37933 * 119.84795 * 180.25312 * 9 8 6 11 11 C 1.38387 * 120.14953 * 0.04710 * 10 9 8 12 12 C 1.38342 * 120.29508 * 359.95570 * 11 10 9 13 13 C 1.37972 * 120.14566 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.07587 * 179.97438 * 13 12 11 15 15 F 1.39903 * 109.47108 * 0.02562 * 14 13 12 16 16 F 1.39907 * 109.47439 * 120.01886 * 14 13 12 17 17 F 1.39901 * 109.47350 * 240.02299 * 14 13 12 18 18 N 1.35815 * 107.46934 * 359.58584 * 4 3 2 19 19 C 1.46497 * 126.09099 * 180.26381 * 18 4 3 20 20 C 1.50696 * 109.47491 * 90.00077 * 19 18 4 21 21 H 1.08003 * 120.00169 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00145 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00065 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00007 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46923 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47238 * 119.99461 * 24 22 20 27 27 H 1.48500 * 109.47051 * 239.99655 * 24 22 20 28 28 N 1.30828 * 125.77733 * 179.65457 * 2 1 3 29 29 H 1.08997 * 109.47266 * 270.31650 * 1 2 3 30 30 H 1.09000 * 109.47170 * 30.31817 * 1 2 3 31 31 H 1.09008 * 109.47377 * 150.31649 * 1 2 3 32 32 H 1.08001 * 126.06796 * 359.97438 * 3 2 1 33 33 H 0.97000 * 119.99516 * 179.69528 * 5 4 3 34 34 H 1.07994 * 120.07877 * 0.25544 * 9 8 6 35 35 H 1.08001 * 119.92639 * 180.02562 * 10 9 8 36 36 H 1.08004 * 119.85193 * 179.97438 * 11 10 9 37 37 H 1.07994 * 119.92527 * 180.02562 * 12 11 10 38 38 H 1.09000 * 109.46950 * 210.00429 * 19 18 4 39 39 H 1.09004 * 109.47366 * 329.99797 * 19 18 4 40 40 H 0.97002 * 119.99549 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6194 0.7148 -0.0029 5 7 4.7495 1.5304 -0.0069 6 6 4.6129 2.8711 -0.0144 7 8 3.5039 3.3692 -0.0173 8 6 5.8114 3.7362 -0.0192 9 6 7.0865 3.1675 -0.0100 10 6 8.2007 3.9805 -0.0092 11 6 8.0569 5.3568 -0.0166 12 6 6.7964 5.9268 -0.0257 13 6 5.6735 5.1251 -0.0269 14 6 4.3011 5.7476 -0.0362 15 9 4.4213 7.1414 -0.0431 16 9 3.6090 5.3337 -1.1795 17 9 3.5989 5.3456 1.1050 18 7 3.6087 -0.6433 0.0047 19 6 4.7858 -1.5155 0.0102 20 6 5.1886 -1.8067 1.4328 21 1 4.6246 -1.3840 2.2512 22 6 6.2779 -2.6119 1.6898 23 7 6.9651 -3.1263 0.6934 24 14 6.7777 -2.9722 3.4533 25 1 5.8495 -2.2790 4.3823 26 1 6.7190 -4.4362 3.6952 27 1 8.1622 -2.4875 3.6843 28 7 2.2718 -1.0614 0.0064 29 1 -0.3634 0.0057 1.0276 30 1 -0.3633 0.8871 -0.5188 31 1 -0.3634 -0.8929 -0.5089 32 1 1.9874 2.1599 -0.0004 33 1 5.6344 1.1330 -0.0043 34 1 7.2001 2.0936 -0.0035 35 1 9.1877 3.5419 -0.0025 36 1 8.9327 5.9889 -0.0155 37 1 6.6911 7.0015 -0.0318 38 1 4.5481 -2.4497 -0.4986 39 1 5.6079 -1.0197 -0.5060 40 1 7.7312 -3.6931 0.8744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084104647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:30 Heat of formation + Delta-G solvation = -73.879815 kcal Electronic energy + Delta-G solvation = -31606.842888 eV Core-core repulsion = 26780.810899 eV Total energy + Delta-G solvation = -4826.031989 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.96572 -47.55166 -47.28535 -41.05958 -40.02409 -38.47175 -34.96216 -33.85272 -32.32032 -32.20305 -31.70504 -29.15763 -28.24894 -26.27638 -26.02429 -24.34288 -22.98681 -22.39787 -21.43192 -19.93725 -19.51939 -18.55000 -18.24164 -18.17289 -17.23651 -16.86624 -16.48405 -15.91378 -15.41453 -15.37752 -14.92739 -14.88368 -14.42567 -14.31258 -14.14357 -14.07149 -13.93638 -13.69906 -13.48313 -13.37576 -13.06738 -12.96338 -12.86124 -12.78295 -12.51647 -12.07238 -12.03151 -11.80045 -11.61625 -11.53722 -11.10199 -10.94991 -10.45685 -10.38541 -10.04241 -9.82756 -9.64748 -9.58808 -9.49816 -8.77098 -7.94013 -7.48181 -6.37990 -4.46514 0.24451 0.68844 2.29071 2.57866 2.72557 2.92823 3.11385 3.20865 3.26869 3.35030 3.63469 3.68642 3.74805 4.01633 4.20464 4.30663 4.44738 4.55467 4.58726 4.86119 4.93860 4.95342 5.09733 5.32733 5.35343 5.59134 5.68794 5.74446 5.90342 6.04687 6.11791 6.13663 6.22016 6.27291 6.36834 6.63578 6.79167 7.00508 7.43680 7.52535 7.57500 7.74895 7.81388 8.15906 8.57786 8.67249 9.21477 10.68983 Molecular weight = 353.11amu Principal moments of inertia in cm(-1) A = 0.009710 B = 0.003973 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.820389 B = 7045.400499 C = 9201.611165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.051 3.949 3 C -0.286 4.286 4 C 0.297 3.703 5 N -0.627 5.627 6 C 0.553 3.447 7 O -0.492 6.492 8 C -0.080 4.080 9 C -0.085 4.085 10 C -0.092 4.092 11 C -0.097 4.097 12 C -0.083 4.083 13 C -0.129 4.129 14 C 0.515 3.485 15 F -0.187 7.187 16 F -0.163 7.163 17 F -0.162 7.162 18 N -0.345 5.345 19 C 0.256 3.744 20 C -0.540 4.540 21 H 0.066 0.934 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.279 1.279 27 H -0.280 1.280 28 N -0.281 5.281 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.163 0.837 33 H 0.415 0.585 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.927 18.143 -3.025 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.318 4.318 4 C 0.076 3.924 5 N -0.274 5.274 6 C 0.339 3.661 7 O -0.366 6.366 8 C -0.083 4.083 9 C -0.103 4.103 10 C -0.110 4.110 11 C -0.115 4.115 12 C -0.101 4.101 13 C -0.132 4.132 14 C 0.461 3.539 15 F -0.169 7.169 16 F -0.144 7.144 17 F -0.143 7.143 18 N -0.131 5.131 19 C 0.139 3.861 20 C -0.579 4.579 21 H 0.084 0.916 22 C -0.136 4.136 23 N -0.527 5.527 24 Si 0.732 3.268 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.206 1.206 28 N -0.106 5.106 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.181 0.819 33 H 0.253 0.747 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.433 17.043 -3.073 17.488 hybrid contribution 0.938 0.272 0.979 1.382 sum 3.370 17.315 -2.094 17.764 Atomic orbital electron populations 1.20027 0.87524 1.02373 1.02198 1.22019 0.96565 0.90949 1.01895 1.21302 0.88984 1.00587 1.20914 1.17942 0.87692 0.83305 1.03503 1.42453 1.08567 1.05090 1.71315 1.17990 0.88957 0.81352 0.77824 1.90817 1.25617 1.73328 1.46836 1.19574 0.93931 0.92062 1.02758 1.21517 0.90848 1.01217 0.96751 1.21404 0.99346 0.93589 0.96675 1.21406 0.97169 0.95296 0.97621 1.21036 0.91169 1.00650 0.97234 1.20089 0.93193 0.93473 1.06407 1.17899 0.85799 0.74987 0.75238 1.93135 1.96178 1.31138 1.96416 1.93247 1.81050 1.89814 1.50302 1.93255 1.80534 1.90134 1.50376 1.49500 1.06505 1.01930 1.55195 1.19626 0.77821 0.89766 0.98922 1.21397 1.13278 1.31831 0.91357 0.91601 1.24931 0.95692 0.94832 0.98188 1.69929 1.19195 1.32531 1.31092 0.86316 0.78333 0.78510 0.83675 1.19524 1.20488 1.20628 1.77339 0.86100 1.21804 1.25390 0.91280 0.91088 0.91537 0.81934 0.74680 0.83896 0.84013 0.84210 0.83703 0.92442 0.93949 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.00 0.38 -0.57 16 2 C 0.05 1.03 7.20 -82.46 -0.59 0.43 16 3 C -0.29 -5.92 9.58 -39.77 -0.38 -6.31 16 4 C 0.30 6.29 7.68 -152.74 -1.17 5.11 16 5 N -0.63 -11.06 5.36 -12.21 -0.07 -11.12 16 6 C 0.55 9.13 7.55 -12.35 -0.09 9.04 16 7 O -0.49 -9.13 8.43 5.30 0.04 -9.09 16 8 C -0.08 -1.04 5.85 -104.97 -0.61 -1.66 16 9 C -0.08 -0.88 9.54 -39.18 -0.37 -1.25 16 10 C -0.09 -0.72 10.03 -39.64 -0.40 -1.12 16 11 C -0.10 -0.68 10.04 -39.49 -0.40 -1.07 16 12 C -0.08 -0.73 9.42 -39.64 -0.37 -1.10 16 13 C -0.13 -1.57 5.40 -104.22 -0.56 -2.13 16 14 C 0.52 7.14 2.78 36.00 0.10 7.24 16 15 F -0.19 -2.25 15.98 2.25 0.04 -2.21 16 16 F -0.16 -2.55 15.04 2.25 0.03 -2.51 16 17 F -0.16 -2.59 14.99 2.25 0.03 -2.55 16 18 N -0.35 -8.05 3.62 -61.45 -0.22 -8.27 16 19 C 0.26 6.30 6.02 -5.20 -0.03 6.27 16 20 C -0.54 -14.26 9.39 -34.44 -0.32 -14.59 16 21 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 22 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -23.73 13.29 55.43 0.74 -22.99 16 24 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 N -0.28 -6.54 12.56 33.64 0.42 -6.12 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.94 8.14 -51.92 -0.42 0.51 16 32 H 0.16 3.30 5.83 -52.49 -0.31 2.99 16 33 H 0.42 6.60 6.03 -40.82 -0.25 6.35 16 34 H 0.14 1.38 6.41 -52.49 -0.34 1.05 16 35 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 37 H 0.15 0.98 7.15 -52.49 -0.38 0.60 16 38 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.04 1.00 7.52 -51.93 -0.39 0.60 16 40 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 354.24 15.07 5.34 5.34 Total: -1.00 -31.77 354.24 -7.33 -39.10 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -3.74 Total: 5.20 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -4.93 Total: -0.05 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.87 Total: -48.51 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.04 Total: -9.09 kcal Atomic # 9 Polarization: -7.38 SS G_CDS: 0.10 Total: -7.28 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.77 -7.33 -39.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084104647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.776 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds