Wall clock time and date at job start Tue Mar 31 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34236 * 116.99888 * 2 1 4 4 O 1.20824 * 120.00043 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99871 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.47407 * 59.99778 * 5 3 2 7 7 N 1.46502 * 109.47310 * 180.02562 * 5 3 2 8 8 C 1.34778 * 119.99734 * 275.00574 * 7 5 3 9 9 O 1.21548 * 120.00335 * 359.97438 * 8 7 5 10 10 C 1.47879 * 119.99756 * 179.97438 * 8 7 5 11 11 C 1.39918 * 120.02833 * 359.72238 * 10 8 7 12 12 C 1.38331 * 120.36166 * 179.72176 * 11 10 8 13 13 C 1.37758 * 120.40782 * 0.55248 * 12 11 10 14 14 C 1.40741 * 120.04049 * 359.72591 * 13 12 11 15 15 C 1.41440 * 120.17769 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00142 * 24.43383 * 15 14 13 17 17 C 1.39942 * 119.99767 * 204.43802 * 15 14 13 18 18 N 1.30823 * 120.00381 * 17.87926 * 17 15 14 19 19 Si 1.86803 * 119.99730 * 197.87886 * 17 15 14 20 20 H 1.48499 * 109.47333 * 89.99967 * 19 17 15 21 21 H 1.48496 * 109.47085 * 210.00015 * 19 17 15 22 22 H 1.48504 * 109.47036 * 330.00015 * 19 17 15 23 23 C 1.38998 * 120.02682 * 179.97438 * 10 8 7 24 24 C 1.50709 * 109.47480 * 300.00025 * 5 3 2 25 25 C 1.38231 * 119.99989 * 99.99673 * 24 5 3 26 26 C 1.38231 * 119.99944 * 179.97438 * 25 24 5 27 27 C 1.38232 * 120.00022 * 0.02562 * 26 25 24 28 28 C 1.50701 * 119.99909 * 179.97438 * 27 26 25 29 29 C 1.38232 * 120.00291 * 359.97438 * 27 26 25 30 30 C 1.38230 * 119.99830 * 279.91557 * 24 5 3 31 31 H 1.09000 * 109.46729 * 59.99969 * 1 2 3 32 32 H 1.08999 * 109.46593 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47199 * 299.99762 * 1 2 3 34 34 H 0.97003 * 120.00067 * 94.99427 * 7 5 3 35 35 H 1.08005 * 119.81912 * 359.97428 * 11 10 8 36 36 H 1.07998 * 119.80130 * 180.25853 * 12 11 10 37 37 H 1.08002 * 119.97808 * 179.74534 * 13 12 11 38 38 H 0.97002 * 120.00371 * 180.02562 * 18 17 15 39 39 H 1.07997 * 120.19812 * 359.97438 * 23 10 8 40 40 H 1.08007 * 119.99953 * 0.26142 * 25 24 5 41 41 H 1.08002 * 119.99713 * 179.97438 * 26 25 24 42 42 H 1.08993 * 109.47280 * 90.00517 * 28 27 26 43 43 H 1.09003 * 109.46902 * 210.00339 * 28 27 26 44 44 H 1.08999 * 109.47369 * 329.99972 * 28 27 26 45 45 H 1.07994 * 120.00688 * 179.97438 * 29 27 26 46 46 H 1.08001 * 120.00076 * 0.08408 * 30 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8891 7 7 3.9817 2.6798 0.0011 8 6 4.0756 3.3552 -1.1615 9 8 3.8160 2.7985 -2.2104 10 6 4.4944 4.7734 -1.1610 11 6 4.7877 5.4164 0.0466 12 6 5.1856 6.7412 0.0547 13 6 5.2868 7.4461 -1.1246 14 6 4.9902 6.8178 -2.3486 15 6 5.0936 7.5386 -3.5612 16 1 5.7465 8.3965 -3.6254 17 6 4.3499 7.1400 -4.6776 18 7 3.3191 6.3485 -4.5284 19 14 4.8292 7.7384 -6.3811 20 1 5.7891 6.7827 -6.9896 21 1 3.6161 7.8312 -7.2325 22 1 5.4633 9.0771 -6.2753 23 6 4.5919 5.4703 -2.3596 24 6 4.1047 0.5920 1.2314 25 6 4.5992 -0.6961 1.1467 26 6 5.0936 -1.3222 2.2756 27 6 5.0930 -0.6605 3.4892 28 6 5.6314 -1.3434 4.7200 29 6 4.5985 0.6275 3.5740 30 6 4.1057 1.2543 2.4447 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 4.1891 3.1240 0.8381 35 1 4.7069 4.8742 0.9772 36 1 5.4138 7.2274 0.9916 37 1 5.5941 8.4813 -1.1099 38 1 2.8038 6.0719 -5.3023 39 1 4.3629 4.9791 -3.2938 40 1 4.6035 -1.2115 0.1976 41 1 5.4795 -2.3288 2.2094 42 1 6.6971 -1.1354 4.8141 43 1 5.1091 -0.9697 5.6007 44 1 5.4772 -2.4192 4.6355 45 1 4.5976 1.1444 4.5222 46 1 3.7193 2.2607 2.5109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084148629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:12 Heat of formation + Delta-G solvation = -77.085804 kcal Electronic energy + Delta-G solvation = -30422.499796 eV Core-core repulsion = 26241.725869 eV Total energy + Delta-G solvation = -4180.773927 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.146 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.88951 -39.49932 -39.00402 -37.10931 -36.35664 -35.09474 -33.75454 -32.63032 -31.16886 -30.47180 -29.46583 -29.00680 -27.53084 -25.59483 -25.13822 -23.24147 -22.52201 -21.67240 -20.99542 -20.42423 -19.63835 -18.00170 -17.77565 -16.98967 -16.68823 -16.28283 -15.82251 -15.62550 -15.25054 -15.12492 -14.75647 -14.49531 -14.17605 -14.00317 -13.79850 -13.60412 -13.44119 -13.28784 -13.14894 -12.71782 -12.59240 -12.50980 -12.35134 -12.32723 -11.99516 -11.64242 -11.41301 -11.18733 -11.17709 -11.09584 -10.77418 -10.73511 -10.61718 -10.49381 -10.05375 -9.69533 -9.22656 -9.19943 -9.14296 -8.97469 -8.75510 -7.64581 -7.51945 -6.79132 -4.40792 0.98583 1.18936 2.13101 2.27502 2.59616 2.82162 3.08367 3.11700 3.16296 3.35758 3.73752 3.85203 3.92605 4.29572 4.56075 4.63166 4.65528 4.78364 4.89315 4.96215 5.06783 5.14795 5.20967 5.23977 5.30859 5.45240 5.47188 5.50404 5.60836 5.70898 5.80534 5.83563 6.07318 6.13899 6.25390 6.28196 6.34701 6.35833 6.58363 6.71060 6.74133 6.97844 7.00675 7.21124 7.37571 7.66245 7.72518 7.80688 7.89788 8.00598 8.17544 8.50164 8.78078 8.82370 8.84921 10.15484 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.013247 B = 0.002686 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.115035 B =10422.573062 C =11554.146634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.450 3.550 4 O -0.484 6.484 5 C 0.204 3.796 6 H 0.132 0.868 7 N -0.714 5.714 8 C 0.574 3.426 9 O -0.540 6.540 10 C -0.125 4.125 11 C -0.216 4.216 12 C -0.097 4.097 13 C -0.210 4.210 14 C 0.098 3.902 15 C -0.459 4.459 16 H 0.082 0.918 17 C 0.073 3.927 18 N -0.782 5.782 19 Si 0.911 3.089 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.090 4.090 24 C -0.097 4.097 25 C -0.085 4.085 26 C -0.119 4.119 27 C -0.081 4.081 28 C -0.115 4.115 29 C -0.116 4.116 30 C -0.103 4.103 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.406 0.594 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.285 0.715 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.125 0.875 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.581 -16.046 14.190 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.290 3.710 4 O -0.369 6.369 5 C 0.096 3.904 6 H 0.149 0.851 7 N -0.370 5.370 8 C 0.366 3.634 9 O -0.417 6.417 10 C -0.128 4.128 11 C -0.236 4.236 12 C -0.115 4.115 13 C -0.230 4.230 14 C 0.096 3.904 15 C -0.488 4.488 16 H 0.100 0.900 17 C -0.147 4.147 18 N -0.406 5.406 19 Si 0.735 3.265 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.110 4.110 24 C -0.098 4.098 25 C -0.104 4.104 26 C -0.137 4.137 27 C -0.081 4.081 28 C -0.172 4.172 29 C -0.134 4.134 30 C -0.121 4.121 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.244 0.756 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.143 0.857 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.059 -16.229 13.277 20.968 hybrid contribution -0.239 0.601 -0.355 0.738 sum -0.298 -15.628 12.922 20.281 Atomic orbital electron populations 1.23240 0.76600 1.03391 1.02608 1.86490 1.23188 1.33335 1.84338 1.24278 0.92262 0.81717 0.72780 1.90715 1.66358 1.36249 1.43562 1.19015 0.86658 0.85406 0.99348 0.85055 1.45828 1.70460 1.09745 1.10941 1.18925 0.75042 0.87267 0.82196 1.90698 1.49684 1.69875 1.31449 1.19337 1.06969 0.90873 0.95621 1.20311 1.12502 0.96098 0.94675 1.20425 1.00297 0.94038 0.96722 1.21101 1.11164 0.98480 0.92296 1.17593 0.89304 0.91035 0.92475 1.19596 1.22518 1.12380 0.94319 0.90003 1.25982 0.93267 0.93819 1.01613 1.69797 1.11627 1.26087 1.33095 0.86265 0.79071 0.80161 0.80989 1.19129 1.20237 1.18557 1.21639 0.99398 0.93691 0.96264 1.19450 1.01708 0.95365 0.93243 1.20983 0.96669 0.93541 0.99190 1.21001 1.00549 1.00106 0.91998 1.19998 0.98092 0.94536 0.95479 1.20810 1.01180 1.00273 0.94925 1.20981 0.99404 0.94653 0.98393 1.20996 0.99046 0.99952 0.92099 0.91808 0.88212 0.92096 0.75611 0.89367 0.88821 0.88549 0.90406 0.84792 0.85183 0.85620 0.90982 0.91487 0.91474 0.85655 0.85791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.01 10.48 -39.27 -0.41 -5.42 16 3 C 0.45 7.53 7.27 36.00 0.26 7.80 16 4 O -0.48 -9.78 16.07 -18.75 -0.30 -10.08 16 5 C 0.20 3.12 2.68 -70.23 -0.19 2.94 16 6 H 0.13 2.02 7.44 -51.93 -0.39 1.63 16 7 N -0.71 -12.62 4.51 -57.00 -0.26 -12.88 16 8 C 0.57 12.98 7.60 -12.31 -0.09 12.89 16 9 O -0.54 -13.73 16.00 5.32 0.09 -13.64 16 10 C -0.12 -3.03 5.87 -105.04 -0.62 -3.64 16 11 C -0.22 -4.64 9.55 -38.92 -0.37 -5.01 16 12 C -0.10 -2.08 10.01 -39.72 -0.40 -2.48 16 13 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 14 C 0.10 2.63 5.57 -106.87 -0.60 2.04 16 15 C -0.46 -12.16 9.05 -37.73 -0.34 -12.50 16 16 H 0.08 2.05 7.91 -52.49 -0.42 1.64 16 17 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 18 N -0.78 -21.11 10.96 55.55 0.61 -20.50 16 19 Si 0.91 18.98 29.60 -169.99 -5.03 13.95 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 23 C -0.09 -2.44 8.24 -38.44 -0.32 -2.75 16 24 C -0.10 -1.19 4.88 -104.62 -0.51 -1.70 16 25 C -0.09 -0.89 9.67 -39.59 -0.38 -1.27 16 26 C -0.12 -1.06 9.70 -39.59 -0.38 -1.44 16 27 C -0.08 -0.71 5.88 -104.63 -0.62 -1.33 16 28 C -0.12 -0.70 10.01 36.01 0.36 -0.34 16 29 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 30 C -0.10 -1.16 9.05 -39.58 -0.36 -1.52 16 31 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 34 H 0.41 6.34 4.88 -40.82 -0.20 6.14 16 35 H 0.09 1.58 6.38 -52.48 -0.33 1.24 16 36 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 37 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.28 7.08 8.30 -40.82 -0.34 6.74 16 39 H 0.13 3.92 5.74 -52.49 -0.30 3.62 16 40 H 0.13 1.15 8.04 -52.48 -0.42 0.73 16 41 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 44 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 45 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 46 H 0.12 1.37 6.91 -52.49 -0.36 1.01 16 LS Contribution 395.68 15.07 5.96 5.96 Total: -1.00 -33.06 395.68 -9.46 -42.51 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -5.78 Total: 12.12 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -4.34 Total: -12.03 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.35 Total: -33.38 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.63 Total: -29.15 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.06 -9.46 -42.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084148629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.571 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds