Wall clock time and date at job start Tue Mar 31 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34236 * 116.99888 * 2 1 4 4 O 1.20824 * 120.00043 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99871 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.47407 * 59.99778 * 5 3 2 7 7 N 1.46502 * 109.47310 * 180.02562 * 5 3 2 8 8 C 1.34778 * 119.99734 * 275.00574 * 7 5 3 9 9 O 1.21548 * 120.00335 * 359.97438 * 8 7 5 10 10 C 1.47879 * 119.99756 * 179.97438 * 8 7 5 11 11 C 1.39918 * 120.02833 * 359.72238 * 10 8 7 12 12 C 1.38331 * 120.36166 * 179.72176 * 11 10 8 13 13 C 1.37758 * 120.40782 * 0.55248 * 12 11 10 14 14 C 1.40741 * 120.04049 * 359.72591 * 13 12 11 15 15 C 1.41440 * 120.17769 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00142 * 24.43383 * 15 14 13 17 17 C 1.39942 * 119.99767 * 204.43802 * 15 14 13 18 18 N 1.30823 * 120.00381 * 17.87926 * 17 15 14 19 19 Si 1.86803 * 119.99730 * 197.87886 * 17 15 14 20 20 H 1.48499 * 109.47333 * 89.99967 * 19 17 15 21 21 H 1.48496 * 109.47085 * 210.00015 * 19 17 15 22 22 H 1.48504 * 109.47036 * 330.00015 * 19 17 15 23 23 C 1.38998 * 120.02682 * 179.97438 * 10 8 7 24 24 C 1.50709 * 109.47480 * 300.00025 * 5 3 2 25 25 C 1.38231 * 119.99989 * 99.99673 * 24 5 3 26 26 C 1.38231 * 119.99944 * 179.97438 * 25 24 5 27 27 C 1.38232 * 120.00022 * 0.02562 * 26 25 24 28 28 C 1.50701 * 119.99909 * 179.97438 * 27 26 25 29 29 C 1.38232 * 120.00291 * 359.97438 * 27 26 25 30 30 C 1.38230 * 119.99830 * 279.91557 * 24 5 3 31 31 H 1.09000 * 109.46729 * 59.99969 * 1 2 3 32 32 H 1.08999 * 109.46593 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47199 * 299.99762 * 1 2 3 34 34 H 0.97003 * 120.00067 * 94.99427 * 7 5 3 35 35 H 1.08005 * 119.81912 * 359.97428 * 11 10 8 36 36 H 1.07998 * 119.80130 * 180.25853 * 12 11 10 37 37 H 1.08002 * 119.97808 * 179.74534 * 13 12 11 38 38 H 0.97002 * 120.00371 * 180.02562 * 18 17 15 39 39 H 1.07997 * 120.19812 * 359.97438 * 23 10 8 40 40 H 1.08007 * 119.99953 * 0.26142 * 25 24 5 41 41 H 1.08002 * 119.99713 * 179.97438 * 26 25 24 42 42 H 1.08993 * 109.47280 * 90.00517 * 28 27 26 43 43 H 1.09003 * 109.46902 * 210.00339 * 28 27 26 44 44 H 1.08999 * 109.47369 * 329.99972 * 28 27 26 45 45 H 1.07994 * 120.00688 * 179.97438 * 29 27 26 46 46 H 1.08001 * 120.00076 * 0.08408 * 30 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8891 7 7 3.9817 2.6798 0.0011 8 6 4.0756 3.3552 -1.1615 9 8 3.8160 2.7985 -2.2104 10 6 4.4944 4.7734 -1.1610 11 6 4.7877 5.4164 0.0466 12 6 5.1856 6.7412 0.0547 13 6 5.2868 7.4461 -1.1246 14 6 4.9902 6.8178 -2.3486 15 6 5.0936 7.5386 -3.5612 16 1 5.7465 8.3965 -3.6254 17 6 4.3499 7.1400 -4.6776 18 7 3.3191 6.3485 -4.5284 19 14 4.8292 7.7384 -6.3811 20 1 5.7891 6.7827 -6.9896 21 1 3.6161 7.8312 -7.2325 22 1 5.4633 9.0771 -6.2753 23 6 4.5919 5.4703 -2.3596 24 6 4.1047 0.5920 1.2314 25 6 4.5992 -0.6961 1.1467 26 6 5.0936 -1.3222 2.2756 27 6 5.0930 -0.6605 3.4892 28 6 5.6314 -1.3434 4.7200 29 6 4.5985 0.6275 3.5740 30 6 4.1057 1.2543 2.4447 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 4.1891 3.1240 0.8381 35 1 4.7069 4.8742 0.9772 36 1 5.4138 7.2274 0.9916 37 1 5.5941 8.4813 -1.1099 38 1 2.8038 6.0719 -5.3023 39 1 4.3629 4.9791 -3.2938 40 1 4.6035 -1.2115 0.1976 41 1 5.4795 -2.3288 2.2094 42 1 6.6971 -1.1354 4.8141 43 1 5.1091 -0.9697 5.6007 44 1 5.4772 -2.4192 4.6355 45 1 4.5976 1.1444 4.5222 46 1 3.7193 2.2607 2.5109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084148629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:11 Heat of formation + Delta-G solvation = -95.319963 kcal Electronic energy + Delta-G solvation = -30423.290489 eV Core-core repulsion = 26241.725869 eV Total energy + Delta-G solvation = -4181.564620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.146 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.17711 -40.79884 -40.23985 -38.88852 -37.70454 -36.41687 -35.62414 -33.76339 -32.10846 -31.91885 -31.32815 -30.25261 -28.45115 -27.24721 -26.32414 -24.56482 -23.68607 -22.87767 -22.65350 -21.57296 -21.28049 -19.70829 -19.00668 -18.50550 -18.00519 -17.60551 -17.24665 -16.99579 -16.56898 -16.30548 -16.10620 -15.83222 -15.68988 -15.24906 -15.06182 -14.74409 -14.49296 -14.48897 -14.36908 -14.35007 -14.28235 -13.55595 -13.45001 -13.19073 -13.00193 -12.96533 -12.86052 -12.83750 -12.55472 -12.23604 -12.18949 -11.96717 -11.95151 -11.92197 -11.89746 -11.53653 -11.10688 -10.99407 -10.53467 -9.88899 -9.57174 -9.53194 -9.42314 -8.68547 -6.40452 0.16661 0.29911 0.44336 0.96397 0.98005 1.33053 1.35114 1.47359 1.50205 2.02617 2.15746 2.17990 2.75022 2.79976 3.26448 3.65539 3.69092 3.73546 3.92722 4.00935 4.06794 4.14067 4.21659 4.23070 4.38442 4.50199 4.53052 4.54721 4.59392 4.81384 4.85927 4.87338 4.91663 5.00621 5.05777 5.13985 5.15151 5.16841 5.27645 5.29073 5.41425 5.47811 5.50847 5.66837 5.80829 5.87923 6.01933 6.02635 6.23397 6.34201 6.52193 6.58341 6.85118 6.91670 7.08790 8.28254 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.013247 B = 0.002686 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.115035 B =10422.573062 C =11554.146634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.452 3.548 4 O -0.528 6.528 5 C 0.204 3.796 6 H 0.127 0.873 7 N -0.695 5.695 8 C 0.571 3.429 9 O -0.579 6.579 10 C -0.138 4.138 11 C -0.198 4.198 12 C -0.093 4.093 13 C -0.214 4.214 14 C 0.067 3.933 15 C -0.495 4.495 16 H 0.087 0.913 17 C 0.027 3.973 18 N -0.827 5.827 19 Si 0.985 3.015 20 H -0.265 1.265 21 H -0.271 1.271 22 H -0.248 1.248 23 C -0.129 4.129 24 C -0.114 4.114 25 C -0.091 4.091 26 C -0.119 4.119 27 C -0.078 4.078 28 C -0.115 4.115 29 C -0.120 4.120 30 C -0.115 4.115 31 H 0.051 0.949 32 H 0.142 0.858 33 H 0.063 0.937 34 H 0.416 0.584 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.112 0.888 38 H 0.286 0.714 39 H 0.100 0.900 40 H 0.140 0.860 41 H 0.152 0.848 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.146 0.854 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.660 -17.345 17.215 24.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.294 3.706 4 O -0.416 6.416 5 C 0.096 3.904 6 H 0.145 0.855 7 N -0.349 5.349 8 C 0.362 3.638 9 O -0.460 6.460 10 C -0.141 4.141 11 C -0.218 4.218 12 C -0.111 4.111 13 C -0.234 4.234 14 C 0.065 3.935 15 C -0.524 4.524 16 H 0.105 0.895 17 C -0.187 4.187 18 N -0.452 5.452 19 Si 0.805 3.195 20 H -0.190 1.190 21 H -0.196 1.196 22 H -0.171 1.171 23 C -0.149 4.149 24 C -0.115 4.115 25 C -0.110 4.110 26 C -0.136 4.136 27 C -0.078 4.078 28 C -0.171 4.171 29 C -0.138 4.138 30 C -0.134 4.134 31 H 0.070 0.930 32 H 0.160 0.840 33 H 0.082 0.918 34 H 0.256 0.744 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.130 0.870 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.157 0.843 41 H 0.170 0.830 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.164 0.836 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.030 -17.557 16.370 24.027 hybrid contribution -0.591 0.844 -1.019 1.449 sum 0.439 -16.713 15.351 22.697 Atomic orbital electron populations 1.23588 0.74745 1.06031 1.02194 1.86479 1.24950 1.31699 1.83530 1.24514 0.92766 0.81806 0.71522 1.90694 1.67375 1.37657 1.45917 1.19158 0.86168 0.83891 1.01152 0.85546 1.45569 1.68885 1.10760 1.09720 1.18818 0.74937 0.87062 0.82977 1.90666 1.51598 1.70547 1.33179 1.19654 1.06617 0.91959 0.95911 1.20810 1.09487 0.96385 0.95126 1.20919 0.98553 0.93888 0.97742 1.21429 1.10228 0.99431 0.92283 1.17954 0.90318 0.91216 0.94026 1.19885 1.23696 1.13322 0.95466 0.89487 1.26918 0.92605 0.93608 1.05616 1.69909 1.13113 1.28058 1.34162 0.85159 0.78778 0.79970 0.75562 1.18967 1.19551 1.17144 1.21448 1.02751 0.94512 0.96217 1.19259 1.03895 0.96299 0.92051 1.21174 0.96442 0.92913 1.00439 1.21327 0.99721 1.01165 0.91424 1.20404 0.96697 0.94232 0.96504 1.20877 1.01593 1.00831 0.93801 1.21247 0.98848 0.95151 0.98527 1.21074 0.99780 1.00099 0.92434 0.93050 0.84010 0.91777 0.74354 0.85101 0.84110 0.86996 0.90339 0.88230 0.84260 0.83040 0.90107 0.90549 0.90194 0.83626 0.86111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.78 16 2 O -0.35 -9.73 10.48 -51.47 -0.54 -10.27 16 3 C 0.45 15.42 7.27 71.23 0.52 15.94 16 4 O -0.53 -22.02 16.07 21.97 0.35 -21.67 16 5 C 0.20 6.32 2.68 43.50 0.12 6.44 16 6 H 0.13 4.04 7.44 -2.39 -0.02 4.02 16 7 N -0.69 -24.76 4.51 -452.54 -2.04 -26.80 16 8 C 0.57 26.81 7.60 86.80 0.66 27.47 16 9 O -0.58 -31.34 16.00 -3.87 -0.06 -31.40 16 10 C -0.14 -6.88 5.87 -20.14 -0.12 -7.00 16 11 C -0.20 -8.21 9.55 22.70 0.22 -7.99 16 12 C -0.09 -3.79 10.01 22.18 0.22 -3.57 16 13 C -0.21 -10.18 9.78 22.77 0.22 -9.96 16 14 C 0.07 3.73 5.57 -21.32 -0.12 3.61 16 15 C -0.49 -27.35 9.05 23.47 0.21 -27.14 16 16 H 0.09 4.51 7.91 -2.91 -0.02 4.48 16 17 C 0.03 1.46 5.14 85.26 0.44 1.90 16 18 N -0.83 -47.62 10.96 21.83 0.24 -47.38 16 19 Si 0.99 40.40 29.60 68.60 2.03 42.43 16 20 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 21 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 22 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 23 C -0.13 -7.40 8.24 23.01 0.19 -7.21 16 24 C -0.11 -2.69 4.88 -19.87 -0.10 -2.79 16 25 C -0.09 -1.74 9.67 22.27 0.22 -1.53 16 26 C -0.12 -1.76 9.70 22.27 0.22 -1.54 16 27 C -0.08 -1.11 5.88 -19.87 -0.12 -1.23 16 28 C -0.11 -0.94 10.01 71.24 0.71 -0.23 16 29 C -0.12 -1.96 9.70 22.27 0.22 -1.74 16 30 C -0.12 -2.43 9.05 22.27 0.20 -2.23 16 31 H 0.05 1.23 8.13 -2.39 -0.02 1.21 16 32 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 34 H 0.42 12.61 4.88 -92.71 -0.45 12.15 16 35 H 0.13 4.23 6.38 -2.91 -0.02 4.21 16 36 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 37 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 38 H 0.29 15.22 8.30 -92.71 -0.77 14.45 16 39 H 0.10 6.35 5.74 -2.91 -0.02 6.33 16 40 H 0.14 2.29 8.04 -2.91 -0.02 2.26 16 41 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 42 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.08 0.51 8.09 -2.39 -0.02 0.49 16 44 H 0.08 0.48 8.09 -2.39 -0.02 0.46 16 45 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 46 H 0.12 2.52 6.91 -2.91 -0.02 2.50 16 Total: -1.00 -77.94 395.68 5.66 -72.29 By element: Atomic # 1 Polarization: 39.25 SS G_CDS: 0.57 Total: 39.82 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 5.10 Total: -17.02 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -1.80 Total: -74.18 kcal Atomic # 8 Polarization: -63.09 SS G_CDS: -0.25 Total: -63.34 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -77.94 5.66 -72.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084148629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.033 kcal (2) G-P(sol) polarization free energy of solvation -77.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds