Wall clock time and date at job start Tue Mar 31 2020 06:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86797 * 120.00053 * 2 1 4 4 H 1.48494 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46911 * 299.99420 * 3 2 1 6 6 H 1.48496 * 109.47537 * 59.99233 * 3 2 1 7 7 C 1.39888 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99854 * 192.49272 * 7 2 1 9 9 C 1.41217 * 120.00170 * 12.49753 * 7 2 1 10 10 C 1.40834 * 120.18027 * 26.57288 * 9 7 2 11 11 C 1.36430 * 119.81386 * 180.02562 * 10 9 7 12 12 C 1.39315 * 120.18273 * 0.02562 * 11 10 9 13 13 O 1.35685 * 119.81486 * 179.97438 * 12 11 10 14 14 C 1.42900 * 116.99589 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46698 * 180.02562 * 14 13 12 16 16 N 1.46891 * 109.47565 * 61.87199 * 15 14 13 17 17 C 1.46958 * 111.00178 * 176.77999 * 16 15 14 18 18 C 1.53052 * 109.36374 * 176.81162 * 17 16 15 19 19 N 1.46956 * 109.36607 * 58.40483 * 18 17 16 20 20 C 1.39163 * 111.00059 * 176.81157 * 19 18 17 21 21 C 1.39474 * 120.86514 * 359.71791 * 20 19 18 22 22 C 1.37905 * 119.06779 * 179.72920 * 21 20 19 23 23 N 1.31992 * 120.84098 * 0.55911 * 22 21 20 24 24 C 1.32000 * 121.90785 * 359.71296 * 23 22 21 25 25 C 1.37891 * 120.84543 * 0.02562 * 24 23 22 26 26 C 1.46956 * 110.87381 * 300.67522 * 19 18 17 27 27 C 1.46960 * 111.00086 * 52.97955 * 16 15 14 28 28 C 1.39310 * 120.36628 * 0.25212 * 12 11 10 29 29 C 1.36436 * 120.18462 * 359.48741 * 28 12 11 30 30 H 0.97000 * 120.00078 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.08817 * 359.97438 * 10 9 7 32 32 H 1.08001 * 119.90813 * 179.97438 * 11 10 9 33 33 H 1.08993 * 109.47560 * 59.99982 * 14 13 12 34 34 H 1.09002 * 109.47143 * 299.99756 * 14 13 12 35 35 H 1.09006 * 109.46848 * 301.86895 * 15 14 13 36 36 H 1.09003 * 109.46905 * 181.87571 * 15 14 13 37 37 H 1.08996 * 109.48979 * 56.84238 * 17 16 15 38 38 H 1.08999 * 109.48759 * 296.77395 * 17 16 15 39 39 H 1.09003 * 109.48713 * 178.36809 * 18 17 16 40 40 H 1.08994 * 109.49094 * 298.40641 * 18 17 16 41 41 H 1.07998 * 120.46998 * 359.97438 * 21 20 19 42 42 H 1.07995 * 119.57770 * 180.24448 * 22 21 20 43 43 H 1.08001 * 119.57327 * 180.02562 * 24 23 22 44 44 H 1.07994 * 120.46889 * 179.97438 * 25 24 23 45 45 H 1.09005 * 109.48603 * 179.28763 * 26 19 18 46 46 H 1.08999 * 109.49318 * 299.34965 * 26 19 18 47 47 H 1.08996 * 109.48627 * 63.22155 * 27 16 15 48 48 H 1.08994 * 109.50317 * 303.16531 * 27 16 15 49 49 H 1.08003 * 119.90724 * 179.72237 * 28 12 11 50 50 H 1.07998 * 120.09565 * 180.25843 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 0.0006 5 1 1.8842 2.3963 -1.2126 6 1 1.8840 2.3965 1.2123 7 6 2.0082 -1.2115 0.0005 8 1 3.0691 -1.2225 0.2029 9 6 1.3272 -2.4201 -0.2636 10 6 0.1561 -2.4165 -1.0458 11 6 -0.4962 -3.5884 -1.2958 12 6 -0.0071 -4.7863 -0.7793 13 8 -0.6620 -5.9474 -1.0322 14 6 -0.1080 -7.1398 -0.4726 15 6 -0.9763 -8.3375 -0.8630 16 7 -0.9808 -8.4834 -2.3247 17 6 -1.7439 -9.6711 -2.7330 18 6 -1.7915 -9.7430 -4.2611 19 7 -0.4211 -9.7938 -4.7895 20 6 -0.4254 -9.9320 -6.1743 21 6 -1.6247 -10.0103 -6.8819 22 6 -1.5857 -10.1412 -8.2542 23 7 -0.4337 -10.2036 -8.8955 24 6 0.7222 -10.1386 -8.2614 25 6 0.7697 -10.0022 -6.8901 26 6 0.3419 -8.6061 -4.3811 27 6 0.3896 -8.5341 -2.8531 28 6 1.1475 -4.7978 0.0001 29 6 1.8146 -3.6353 0.2552 30 1 -0.4850 0.8400 -0.0004 31 1 -0.2250 -1.4885 -1.4458 32 1 -1.3947 -3.5874 -1.8951 33 1 -0.0773 -7.0514 0.6133 34 1 0.9028 -7.2846 -0.8540 35 1 -1.9954 -8.1776 -0.5107 36 1 -0.5726 -9.2424 -0.4087 37 1 -2.7584 -9.6042 -2.3403 38 1 -1.2604 -10.5662 -2.3418 39 1 -2.3323 -10.6388 -4.5664 40 1 -2.2996 -8.8611 -4.6510 41 1 -2.5707 -9.9649 -6.3629 42 1 -2.5094 -10.1986 -8.8107 43 1 1.6425 -10.1930 -8.8239 44 1 1.7188 -9.9500 -6.3775 45 1 1.3565 -8.6730 -4.7738 46 1 -0.1415 -7.7109 -4.7725 47 1 0.8973 -9.4163 -2.4631 48 1 0.9307 -7.6385 -2.5479 49 1 1.5176 -5.7301 0.4005 50 1 2.7119 -3.6465 0.8562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089783461.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:01 Heat of formation + Delta-G solvation = 45.501633 kcal Electronic energy + Delta-G solvation = -30157.017728 eV Core-core repulsion = 26149.685436 eV Total energy + Delta-G solvation = -4007.332292 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.01499 -39.39397 -38.60767 -36.77605 -35.79264 -33.31016 -32.07458 -31.75176 -30.95938 -29.98590 -29.26477 -28.74524 -26.32278 -24.81113 -24.68635 -23.20940 -22.59801 -22.02594 -20.71179 -20.50296 -19.91615 -18.15867 -17.33963 -17.03656 -16.66422 -16.20248 -15.97896 -15.40734 -15.27068 -15.20414 -14.77478 -14.67183 -14.47032 -14.29912 -13.98943 -13.96289 -13.87977 -13.57999 -13.05200 -12.65356 -12.44537 -12.23125 -12.16519 -12.02934 -11.83342 -11.65749 -11.55171 -11.36472 -11.21925 -11.08503 -10.84965 -10.67360 -10.61183 -10.49367 -9.89018 -9.79943 -9.73625 -9.43852 -9.31559 -9.05459 -8.56081 -8.42993 -7.63465 -6.97438 -6.67343 -4.26112 0.90171 1.01632 2.77938 2.95631 3.09362 3.14410 3.20520 3.22851 3.61187 3.64229 3.96439 4.08853 4.23764 4.37465 4.49271 4.65486 4.70650 4.73092 4.84735 4.91184 4.99926 5.03971 5.12058 5.18469 5.20029 5.27413 5.40312 5.45166 5.49334 5.52178 5.56619 5.58465 5.67202 5.70559 5.74496 5.84125 5.89219 6.06875 6.23436 6.29338 6.50950 6.71246 6.75984 6.87829 6.89463 6.99024 7.12844 7.21005 7.49478 7.57404 7.78608 7.79866 8.02180 8.22804 8.48167 8.67757 8.92146 9.00096 10.26526 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.013690 B = 0.001952 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.781527 B =14343.776108 C =15524.605677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.071 3.929 3 Si 0.909 3.091 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.462 4.462 8 H 0.075 0.925 9 C 0.084 3.916 10 C -0.129 4.129 11 C -0.122 4.122 12 C -0.002 4.002 13 O -0.311 6.311 14 C 0.066 3.934 15 C 0.061 3.939 16 N -0.528 5.528 17 C 0.056 3.944 18 C 0.053 3.947 19 N -0.489 5.489 20 C 0.160 3.840 21 C -0.227 4.227 22 C 0.122 3.878 23 N -0.510 5.510 24 C 0.119 3.881 25 C -0.197 4.197 26 C 0.063 3.937 27 C 0.051 3.949 28 C -0.173 4.173 29 C -0.195 4.195 30 H 0.278 0.722 31 H 0.129 0.871 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.137 0.863 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.136 0.864 45 H 0.087 0.913 46 H 0.060 0.940 47 H 0.041 0.959 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.763 -19.677 -8.821 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.082 3.918 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.045 4.045 13 O -0.227 6.227 14 C -0.011 4.011 15 C -0.067 4.067 16 N -0.253 5.253 17 C -0.073 4.073 18 C -0.074 4.074 19 N -0.204 5.204 20 C 0.053 3.947 21 C -0.250 4.250 22 C -0.035 4.035 23 N -0.221 5.221 24 C -0.037 4.037 25 C -0.220 4.220 26 C -0.062 4.062 27 C -0.077 4.077 28 C -0.192 4.192 29 C -0.215 4.215 30 H 0.089 0.911 31 H 0.146 0.854 32 H 0.115 0.885 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.155 0.845 42 H 0.171 0.829 43 H 0.173 0.827 44 H 0.153 0.847 45 H 0.106 0.894 46 H 0.079 0.921 47 H 0.059 0.941 48 H 0.114 0.886 49 H 0.110 0.890 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.120 -19.590 -9.708 22.085 hybrid contribution 0.596 0.621 1.384 1.630 sum -2.523 -18.969 -8.324 20.868 Atomic orbital electron populations 1.69810 1.07358 1.28791 1.37348 1.25866 0.94815 1.01154 0.92572 0.86249 0.80776 0.81125 0.78454 1.18586 1.19827 1.20114 1.19485 0.96248 0.90628 1.42916 0.90675 1.17613 0.92200 0.92164 0.89816 1.21078 0.97769 0.96161 0.99788 1.19852 1.00540 0.90556 1.03168 1.18657 0.95580 0.84981 1.05330 1.85954 1.51443 1.12761 1.72493 1.22525 0.96325 0.84780 0.97422 1.22162 1.01725 0.95714 0.87066 1.62110 1.13761 1.38388 1.11055 1.22179 0.99355 0.91610 0.94126 1.22391 0.87812 1.02070 0.95154 1.59005 1.15823 1.38744 1.06841 1.19276 0.93743 0.93367 0.88314 1.22282 0.98345 1.08229 0.96105 1.22590 0.96309 0.93333 0.91255 1.67728 0.98432 1.14893 1.41036 1.22608 0.96256 0.93526 0.91300 1.21810 0.97939 1.06702 0.95528 1.22342 0.98309 0.89493 0.96036 1.22292 0.90221 1.01870 0.93296 1.20398 0.97473 0.97767 1.03576 1.20586 1.02272 0.92902 1.05696 0.91096 0.85355 0.88533 0.92681 0.93068 0.89561 0.93382 0.89592 0.94027 0.89565 0.92068 0.84479 0.82880 0.82708 0.84656 0.89434 0.92115 0.94070 0.88593 0.89012 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.95 10.78 55.54 0.60 -20.35 16 2 C 0.07 1.80 5.23 -17.34 -0.09 1.71 16 3 Si 0.91 18.80 29.58 -169.99 -5.03 13.77 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.46 -12.26 9.05 -37.83 -0.34 -12.60 16 8 H 0.08 1.92 7.88 -52.48 -0.41 1.51 16 9 C 0.08 2.24 5.57 -106.80 -0.60 1.65 16 10 C -0.13 -3.35 8.62 -39.25 -0.34 -3.69 16 11 C -0.12 -2.94 9.92 -39.83 -0.40 -3.33 16 12 C 0.00 -0.05 6.71 -38.78 -0.26 -0.31 16 13 O -0.31 -6.06 10.02 -18.76 -0.19 -6.25 16 14 C 0.07 0.97 4.37 37.16 0.16 1.13 16 15 C 0.06 0.70 5.52 -3.83 -0.02 0.68 16 16 N -0.53 -6.18 4.71 -234.47 -1.10 -7.28 16 17 C 0.06 0.51 5.62 -3.77 -0.02 0.49 16 18 C 0.05 0.47 4.31 -3.77 -0.02 0.45 16 19 N -0.49 -4.84 4.75 -170.76 -0.81 -5.65 16 20 C 0.16 1.60 5.65 -83.61 -0.47 1.12 16 21 C -0.23 -2.06 8.88 -39.24 -0.35 -2.41 16 22 C 0.12 1.14 11.17 -17.60 -0.20 0.94 16 23 N -0.51 -5.52 10.36 -13.35 -0.14 -5.66 16 24 C 0.12 1.12 11.17 -17.61 -0.20 0.92 16 25 C -0.20 -1.83 9.28 -39.25 -0.36 -2.20 16 26 C 0.06 0.67 5.38 -3.77 -0.02 0.65 16 27 C 0.05 0.58 5.14 -3.77 -0.02 0.56 16 28 C -0.17 -3.83 8.96 -39.83 -0.36 -4.18 16 29 C -0.19 -4.73 9.74 -39.25 -0.38 -5.12 16 30 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 31 H 0.13 3.44 6.10 -52.48 -0.32 3.12 16 32 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 33 H 0.06 0.79 7.63 -51.93 -0.40 0.39 16 34 H 0.05 0.73 5.65 -51.93 -0.29 0.43 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.63 7.20 -51.93 -0.37 0.26 16 40 H 0.06 0.60 7.63 -51.93 -0.40 0.20 16 41 H 0.14 1.01 5.97 -52.49 -0.31 0.69 16 42 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.14 1.06 7.27 -52.49 -0.38 0.68 16 45 H 0.09 0.81 6.90 -51.93 -0.36 0.45 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.10 1.23 5.97 -51.93 -0.31 0.92 16 49 H 0.09 1.74 6.27 -52.48 -0.33 1.41 16 50 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 LS Contribution 395.70 15.07 5.96 5.96 Total: -1.00 -29.94 395.70 -12.23 -42.17 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -7.25 Total: 6.83 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -4.28 Total: -23.54 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: -1.46 Total: -38.95 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.19 Total: -6.25 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.94 -12.23 -42.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089783461.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.675 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds