Wall clock time and date at job start Tue Mar 31 2020 05:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86807 * 119.99545 * 2 1 4 4 H 1.48502 * 109.46961 * 264.99437 * 3 2 1 5 5 H 1.48492 * 109.47220 * 24.99638 * 3 2 1 6 6 H 1.48503 * 109.47043 * 144.99981 * 3 2 1 7 7 C 1.39887 * 120.00576 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00759 * 149.24611 * 7 2 1 9 9 C 1.41216 * 119.99689 * 329.25082 * 7 2 1 10 10 C 1.40832 * 120.18251 * 160.53661 * 9 7 2 11 11 C 1.36435 * 119.81590 * 180.02562 * 10 9 7 12 12 C 1.39308 * 120.18348 * 0.02562 * 11 10 9 13 13 O 1.35674 * 119.81886 * 179.97438 * 12 11 10 14 14 C 1.42897 * 117.00223 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47297 * 179.97438 * 14 13 12 16 16 N 1.46899 * 109.47190 * 67.09507 * 15 14 13 17 17 C 1.46955 * 111.00026 * 199.65882 * 16 15 14 18 18 C 1.53050 * 109.36372 * 176.81479 * 17 16 15 19 19 N 1.46955 * 109.36461 * 58.40177 * 18 17 16 20 20 C 1.39676 * 110.99799 * 176.81276 * 19 18 17 21 21 C 1.38913 * 120.07606 * 123.52577 * 20 19 18 22 22 C 1.38100 * 119.92415 * 179.77047 * 21 20 19 23 23 C 1.38289 * 120.07728 * 0.50168 * 22 21 20 24 24 C 1.38285 * 120.14794 * 359.74924 * 23 22 21 25 25 C 1.38108 * 120.07307 * 359.97438 * 24 23 22 26 26 C 1.46955 * 110.88027 * 300.67849 * 19 18 17 27 27 C 1.46955 * 110.99715 * 75.86132 * 16 15 14 28 28 C 1.39315 * 120.36380 * 0.24813 * 12 11 10 29 29 C 1.36437 * 120.18707 * 359.49027 * 28 12 11 30 30 H 0.97001 * 120.00437 * 359.97438 * 1 2 3 31 31 H 1.08011 * 120.09187 * 359.97438 * 10 9 7 32 32 H 1.08002 * 119.90444 * 179.97438 * 11 10 9 33 33 H 1.08998 * 109.46955 * 299.99601 * 14 13 12 34 34 H 1.08999 * 109.47466 * 59.99286 * 14 13 12 35 35 H 1.09000 * 109.47326 * 187.09865 * 15 14 13 36 36 H 1.09007 * 109.46690 * 307.09614 * 15 14 13 37 37 H 1.08996 * 109.48958 * 296.78002 * 17 16 15 38 38 H 1.08997 * 109.48740 * 56.84994 * 17 16 15 39 39 H 1.09008 * 109.48809 * 298.43429 * 18 17 16 40 40 H 1.08999 * 109.49039 * 178.37009 * 18 17 16 41 41 H 1.07997 * 120.03283 * 359.97438 * 21 20 19 42 42 H 1.08003 * 119.96015 * 180.25693 * 22 21 20 43 43 H 1.07997 * 119.92908 * 179.77071 * 23 22 21 44 44 H 1.07998 * 119.96092 * 180.02562 * 24 23 22 45 45 H 1.08004 * 120.03435 * 179.97438 * 25 24 23 46 46 H 1.08995 * 109.49347 * 299.35203 * 26 19 18 47 47 H 1.09000 * 109.48263 * 179.28704 * 26 19 18 48 48 H 1.08998 * 109.49634 * 303.15523 * 27 16 15 49 49 H 1.09008 * 109.48952 * 63.22090 * 27 16 15 50 50 H 1.08006 * 119.90571 * 179.72525 * 28 12 11 51 51 H 1.07995 * 120.09849 * 180.25728 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6179 0.0000 4 1 2.5960 1.9855 -1.3948 5 1 1.3912 2.6809 0.5916 6 1 3.4834 1.4732 0.8031 7 6 2.0083 -1.2114 -0.0005 8 1 2.9744 -1.2770 -0.4788 9 6 1.4512 -2.3487 0.6242 10 6 1.9165 -3.6365 0.2952 11 6 1.3725 -4.7302 0.9030 12 6 0.3592 -4.5756 1.8464 13 8 -0.1768 -5.6683 2.4460 14 6 -1.2118 -5.4403 3.4044 15 6 -1.6889 -6.7802 3.9685 16 7 -0.6125 -7.3888 4.7614 17 6 -0.8319 -8.8324 4.9269 18 6 0.3481 -9.4411 5.6881 19 7 0.4801 -8.7784 6.9931 20 6 1.5036 -9.3571 7.7471 21 6 2.5471 -8.5729 8.2222 22 6 3.5549 -9.1475 8.9714 23 6 3.5316 -10.5038 9.2400 24 6 2.4971 -11.2884 8.7642 25 6 1.4830 -10.7192 8.0192 26 6 0.6995 -7.3348 6.8276 27 6 -0.4805 -6.7261 6.0664 28 6 -0.1107 -3.3056 2.1735 29 6 0.4262 -2.2012 1.5788 30 1 -0.4851 0.8400 0.0004 31 1 2.7012 -3.7582 -0.4370 32 1 1.7280 -5.7185 0.6514 33 1 -0.8267 -4.8211 4.2146 34 1 -2.0468 -4.9310 2.9233 35 1 -2.5603 -6.6178 4.6028 36 1 -1.9561 -7.4455 3.1474 37 1 -1.7514 -8.9985 5.4883 38 1 -0.9138 -9.3025 3.9469 39 1 1.2636 -9.2990 5.1138 40 1 0.1738 -10.5067 5.8374 41 1 2.5684 -7.5144 8.0087 42 1 4.3643 -8.5375 9.3446 43 1 4.3230 -10.9513 9.8230 44 1 2.4817 -12.3472 8.9762 45 1 0.6755 -11.3326 7.6475 46 1 1.6190 -7.1687 6.2663 47 1 0.7815 -6.8649 7.8077 48 1 -0.3062 -5.6605 5.9173 49 1 -1.3960 -6.8683 6.6408 50 1 -0.8996 -3.1946 2.9027 51 1 0.0637 -1.2171 1.8364 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089845630.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:33 Heat of formation + Delta-G solvation = 31.032623 kcal Electronic energy + Delta-G solvation = -29903.922726 eV Core-core repulsion = 25961.388922 eV Total energy + Delta-G solvation = -3942.533804 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 352.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.59803 -38.92415 -38.25967 -36.47699 -35.43968 -33.37834 -31.87481 -31.11285 -30.60078 -29.60786 -29.32455 -28.44142 -25.84108 -24.66745 -24.52649 -22.51328 -22.04308 -21.67547 -20.93901 -20.16440 -19.82410 -17.97316 -17.33705 -16.96829 -16.24822 -15.88302 -15.76598 -15.38522 -15.07345 -14.87531 -14.70022 -14.49446 -14.17915 -14.00848 -13.89968 -13.74236 -13.68290 -13.05110 -12.76855 -12.63821 -12.33600 -12.21054 -12.07680 -11.92068 -11.71720 -11.62022 -11.52238 -11.38180 -11.18683 -11.07840 -11.01284 -10.89839 -10.68469 -10.43418 -9.93959 -9.88549 -9.79494 -9.31707 -9.16794 -8.86527 -8.38725 -8.06340 -7.60586 -7.07501 -6.79712 -4.17440 1.15615 1.17696 2.80243 3.00152 3.07408 3.10390 3.27663 3.35485 3.68650 3.71359 3.93764 4.18925 4.52583 4.55598 4.62944 4.73231 4.82761 4.90604 4.92906 5.05580 5.10206 5.20101 5.23038 5.30123 5.33212 5.36279 5.47282 5.54597 5.57596 5.62368 5.65564 5.70030 5.77774 5.81510 5.87257 5.96909 6.03550 6.16179 6.17976 6.33212 6.33254 6.52216 6.72813 6.76965 6.92485 6.95050 6.97131 7.07300 7.09040 7.28234 7.46506 7.59888 7.95049 8.02319 8.19559 8.49812 8.70524 8.90485 9.05099 10.12140 Molecular weight = 352.19amu Principal moments of inertia in cm(-1) A = 0.015459 B = 0.001878 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.849028 B =14906.409473 C =15840.895667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.085 3.915 3 Si 0.896 3.104 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.470 4.470 8 H 0.079 0.921 9 C 0.090 3.910 10 C -0.203 4.203 11 C -0.107 4.107 12 C -0.013 4.013 13 O -0.314 6.314 14 C 0.076 3.924 15 C 0.060 3.940 16 N -0.529 5.529 17 C 0.057 3.943 18 C 0.062 3.938 19 N -0.492 5.492 20 C 0.116 3.884 21 C -0.170 4.170 22 C -0.093 4.093 23 C -0.151 4.151 24 C -0.097 4.097 25 C -0.143 4.143 26 C 0.054 3.946 27 C 0.054 3.946 28 C -0.169 4.169 29 C -0.150 4.150 30 H 0.281 0.719 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.059 0.941 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.041 0.959 50 H 0.091 0.909 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.972 -16.947 16.227 23.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.498 4.498 8 H 0.097 0.903 9 C 0.088 3.912 10 C -0.223 4.223 11 C -0.126 4.126 12 C -0.057 4.057 13 O -0.230 6.230 14 C -0.001 4.001 15 C -0.068 4.068 16 N -0.254 5.254 17 C -0.071 4.071 18 C -0.064 4.064 19 N -0.208 5.208 20 C 0.018 3.982 21 C -0.191 4.191 22 C -0.112 4.112 23 C -0.170 4.170 24 C -0.116 4.116 25 C -0.163 4.163 26 C -0.073 4.073 27 C -0.074 4.074 28 C -0.187 4.187 29 C -0.169 4.169 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.146 0.854 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.078 0.922 47 H 0.103 0.897 48 H 0.105 0.895 49 H 0.059 0.941 50 H 0.110 0.890 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.217 -16.957 16.093 23.409 hybrid contribution 0.006 1.132 0.196 1.149 sum -1.211 -15.825 16.289 22.743 Atomic orbital electron populations 1.69941 1.07938 1.29529 1.33045 1.25886 0.94367 1.01346 0.91837 0.86542 0.81123 0.80886 0.79507 1.19386 1.20179 1.18351 1.19396 1.04445 0.93459 1.32543 0.90326 1.17530 0.91169 0.91855 0.90677 1.20509 1.05278 0.92067 1.04422 1.19591 0.97310 0.97743 0.97979 1.18526 1.00682 0.84893 1.01557 1.85878 1.51487 1.31304 1.54344 1.22398 0.90600 0.95579 0.91557 1.22153 0.91358 0.96373 0.96912 1.62065 1.45302 1.02431 1.15636 1.22187 0.96437 0.88573 0.99892 1.22308 0.99075 0.98043 0.86952 1.59282 1.40597 1.04546 1.16339 1.18990 0.89217 0.93354 0.96636 1.21381 0.94245 1.00695 1.02784 1.21029 0.97904 0.95076 0.97191 1.21065 0.99438 0.94091 1.02397 1.21000 0.93983 0.99631 0.96961 1.20779 0.99987 0.93438 1.02091 1.22353 0.98584 0.86145 1.00259 1.22243 0.97156 0.99181 0.88811 1.20546 1.02160 0.92818 1.03219 1.20734 1.00612 0.96823 0.98734 0.90835 0.88407 0.88684 0.93322 0.92942 0.93090 0.89845 0.94131 0.89639 0.92592 0.89795 0.85441 0.86085 0.86327 0.86059 0.85937 0.92238 0.89682 0.89523 0.94070 0.89050 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.14 11.48 55.54 0.64 -19.50 16 2 C 0.09 2.15 4.85 -17.34 -0.08 2.06 16 3 Si 0.90 18.52 29.65 -169.99 -5.04 13.48 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 7 C -0.47 -12.55 8.97 -37.83 -0.34 -12.89 16 8 H 0.08 2.02 8.00 -52.49 -0.42 1.60 16 9 C 0.09 2.43 5.60 -106.80 -0.60 1.83 16 10 C -0.20 -5.10 9.74 -39.25 -0.38 -5.48 16 11 C -0.11 -2.55 9.92 -39.83 -0.40 -2.95 16 12 C -0.01 -0.31 6.71 -38.78 -0.26 -0.57 16 13 O -0.31 -6.43 10.09 -18.72 -0.19 -6.62 16 14 C 0.08 1.20 4.94 37.16 0.18 1.38 16 15 C 0.06 0.74 5.38 -3.82 -0.02 0.72 16 16 N -0.53 -6.59 4.61 -234.46 -1.08 -7.67 16 17 C 0.06 0.59 5.56 -3.77 -0.02 0.57 16 18 C 0.06 0.62 5.38 -3.77 -0.02 0.60 16 19 N -0.49 -5.24 4.75 -170.96 -0.81 -6.06 16 20 C 0.12 1.22 5.64 -83.79 -0.47 0.75 16 21 C -0.17 -1.73 8.82 -39.38 -0.35 -2.08 16 22 C -0.09 -0.84 10.04 -39.61 -0.40 -1.24 16 23 C -0.15 -1.27 10.04 -39.55 -0.40 -1.67 16 24 C -0.10 -0.81 10.04 -39.61 -0.40 -1.21 16 25 C -0.14 -1.34 9.19 -39.38 -0.36 -1.70 16 26 C 0.05 0.58 4.29 -3.77 -0.02 0.56 16 27 C 0.05 0.61 5.43 -3.77 -0.02 0.59 16 28 C -0.17 -3.99 8.96 -39.83 -0.36 -4.34 16 29 C -0.15 -3.91 8.74 -39.25 -0.34 -4.25 16 30 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 31 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 32 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 33 H 0.05 0.77 6.21 -51.93 -0.32 0.45 16 34 H 0.05 0.82 7.63 -51.93 -0.40 0.43 16 35 H 0.05 0.53 7.99 -51.93 -0.42 0.12 16 36 H 0.08 1.01 7.84 -51.93 -0.41 0.61 16 37 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.83 8.00 -51.93 -0.42 0.42 16 39 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.08 0.71 6.82 -51.93 -0.35 0.35 16 41 H 0.13 1.22 5.81 -52.49 -0.31 0.91 16 42 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.12 1.00 7.19 -52.48 -0.38 0.62 16 46 H 0.06 0.72 7.57 -51.93 -0.39 0.33 16 47 H 0.08 0.82 7.18 -51.93 -0.37 0.44 16 48 H 0.09 1.02 6.69 -51.93 -0.35 0.67 16 49 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 50 H 0.09 1.92 6.27 -52.48 -0.33 1.59 16 51 H 0.11 2.94 6.28 -52.49 -0.33 2.61 16 LS Contribution 402.68 15.07 6.07 6.07 Total: -1.00 -29.47 402.68 -13.17 -42.64 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.70 Total: 6.98 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -5.05 Total: -29.32 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: -1.26 Total: -33.23 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.19 Total: -6.62 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.04 Total: 13.48 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.47 -13.17 -42.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089845630.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.671 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds