Wall clock time and date at job start Tue Mar 31 2020 05:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 110.99981 * 2 1 4 4 C 1.46902 * 110.99676 * 123.95221 * 2 1 3 5 5 C 1.50702 * 109.47210 * 66.04479 * 4 2 1 6 6 C 1.38253 * 120.00248 * 269.97923 * 5 4 2 7 7 C 1.38211 * 120.00374 * 179.97438 * 6 5 4 8 8 C 1.38260 * 119.99422 * 359.85345 * 7 6 5 9 9 C 1.38213 * 120.00472 * 0.39842 * 8 7 6 10 10 C 1.50698 * 120.00263 * 179.80868 * 9 8 7 11 11 C 1.52997 * 109.46935 * 269.72563 * 10 9 8 12 12 N 1.46506 * 109.47050 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00017 * 180.02562 * 12 11 10 14 14 O 1.21542 * 119.99838 * 359.97438 * 13 12 11 15 15 C 1.47888 * 119.99587 * 179.97438 * 13 12 11 16 16 C 1.39912 * 120.03008 * 359.97438 * 15 13 12 17 17 C 1.38329 * 120.36210 * 180.02562 * 16 15 13 18 18 C 1.37755 * 120.41116 * 359.97438 * 17 16 15 19 19 C 1.40750 * 120.03993 * 0.02562 * 18 17 16 20 20 C 1.41432 * 120.17732 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99660 * 150.17685 * 20 19 18 22 22 C 1.39930 * 120.00204 * 330.18089 * 20 19 18 23 23 N 1.30824 * 120.00170 * 161.73158 * 22 20 19 24 24 Si 1.86802 * 119.99882 * 341.72549 * 22 20 19 25 25 H 1.48498 * 109.47019 * 95.41425 * 24 22 20 26 26 H 1.48493 * 109.47000 * 215.41400 * 24 22 20 27 27 H 1.48500 * 109.47040 * 335.41493 * 24 22 20 28 28 C 1.38999 * 120.02054 * 179.97438 * 15 13 12 29 29 C 1.38210 * 119.99557 * 89.99788 * 5 4 2 30 30 H 1.08997 * 109.47411 * 296.05069 * 1 2 3 31 31 H 1.09003 * 109.46902 * 56.04506 * 1 2 3 32 32 H 1.09003 * 109.47318 * 176.04762 * 1 2 3 33 33 H 1.08997 * 109.47522 * 183.95103 * 3 2 1 34 34 H 1.09004 * 109.47305 * 303.95090 * 3 2 1 35 35 H 1.09003 * 109.47677 * 63.95289 * 3 2 1 36 36 H 1.09002 * 109.47402 * 306.04654 * 4 2 1 37 37 H 1.08992 * 109.46929 * 186.04757 * 4 2 1 38 38 H 1.08001 * 120.00101 * 359.97438 * 6 5 4 39 39 H 1.08001 * 120.00431 * 180.02562 * 7 6 5 40 40 H 1.08007 * 119.99646 * 180.20739 * 8 7 6 41 41 H 1.09006 * 109.47051 * 149.72827 * 10 9 8 42 42 H 1.09003 * 109.47061 * 29.72837 * 10 9 8 43 43 H 1.09002 * 109.47203 * 60.00723 * 11 10 9 44 44 H 1.09003 * 109.47469 * 300.00023 * 11 10 9 45 45 H 0.96998 * 119.99441 * 0.02562 * 12 11 10 46 46 H 1.08006 * 119.81676 * 0.03857 * 16 15 13 47 47 H 1.08003 * 119.79248 * 179.97438 * 17 16 15 48 48 H 1.07993 * 119.98024 * 180.02562 * 18 17 16 49 49 H 0.96998 * 119.99940 * 179.97438 * 23 22 20 50 50 H 1.07996 * 120.20436 * 0.25466 * 28 15 13 51 51 H 1.07995 * 120.00590 * 359.97438 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6368 -2.2204 0.9730 6 6 0.4510 -2.7034 1.4945 7 6 0.1219 -4.0372 1.3430 8 6 0.9772 -4.8877 0.6673 9 6 2.1651 -4.4061 0.1504 10 6 3.0993 -5.3341 -0.5824 11 6 4.0857 -5.9529 0.4100 12 7 4.9943 -6.8547 -0.3025 13 6 5.9541 -7.5165 0.3736 14 8 6.0662 -7.3650 1.5743 15 6 6.8709 -8.4272 -0.3456 16 6 6.7420 -8.6025 -1.7277 17 6 7.5954 -9.4530 -2.4072 18 6 8.5822 -10.1368 -1.7317 19 6 8.7272 -9.9732 -0.3412 20 6 9.7397 -10.6733 0.3552 21 1 10.1791 -10.2447 1.2439 22 6 10.1721 -11.9213 -0.1071 23 7 11.3188 -12.4063 0.2947 24 14 9.1120 -12.8948 -1.2979 25 1 9.5593 -12.6302 -2.6889 26 1 9.2408 -14.3446 -1.0037 27 1 7.6931 -12.4833 -1.1475 28 6 7.8613 -9.1097 0.3511 29 6 2.4936 -3.0715 0.3009 30 1 -0.3634 0.4513 0.9232 31 1 -0.3633 0.5740 -0.8525 32 1 -0.3634 -1.0252 -0.0708 33 1 3.0827 1.3432 -0.0708 34 1 1.5898 1.9163 -0.8525 35 1 1.7044 1.8724 0.9233 36 1 1.5610 -0.3872 2.0629 37 1 3.0796 -0.6611 1.1757 38 1 -0.2182 -2.0385 2.0203 39 1 -0.8046 -4.4144 1.7501 40 1 0.7184 -5.9293 0.5460 41 1 3.6485 -4.7737 -1.3391 42 1 2.5230 -6.1248 -1.0629 43 1 3.5364 -6.5133 1.1666 44 1 4.6619 -5.1622 0.8905 45 1 4.9050 -6.9753 -1.2608 46 1 5.9720 -8.0707 -2.2670 47 1 7.4874 -9.5818 -3.4741 48 1 9.2449 -10.7987 -2.2692 49 1 11.6183 -13.2715 -0.0255 50 1 7.9619 -8.9806 1.4185 51 1 3.4199 -2.6942 -0.1066 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095394892.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:41 Heat of formation + Delta-G solvation = 2.448184 kcal Electronic energy + Delta-G solvation = -28846.074594 eV Core-core repulsion = 24902.301276 eV Total energy + Delta-G solvation = -3943.773318 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 352.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.05971 -39.36806 -37.63085 -37.28223 -35.28457 -33.71772 -32.82408 -31.84366 -30.71346 -30.04401 -28.57246 -27.94048 -27.10717 -25.28425 -24.14027 -23.04795 -22.44199 -21.76614 -20.73017 -20.56474 -19.87560 -17.89656 -16.75926 -16.36666 -16.19904 -15.99839 -15.83745 -15.52381 -15.44693 -15.38893 -14.73763 -14.67664 -14.40907 -13.78211 -13.69916 -13.46290 -13.24250 -13.05867 -12.97923 -12.75973 -12.74917 -12.70807 -12.45061 -12.14261 -12.11645 -12.02919 -11.79298 -11.64359 -11.47938 -11.24269 -11.07496 -11.04247 -10.77679 -10.54325 -10.01336 -9.72482 -9.43902 -9.16276 -9.08606 -8.95468 -8.82974 -8.70966 -7.86822 -7.75948 -7.00638 -4.55409 1.05053 1.15935 1.92037 2.51541 3.05348 3.17425 3.25865 3.29646 3.52787 3.63230 3.81537 3.93144 4.35915 4.48835 4.51357 4.65486 4.73166 4.80894 4.89153 4.91981 4.94316 4.96141 5.06788 5.16785 5.21682 5.29091 5.32165 5.38779 5.40145 5.44309 5.47872 5.51895 5.70415 5.80035 5.85060 5.88996 5.99279 6.02560 6.21082 6.28517 6.39053 6.40317 6.53206 6.57882 6.64831 6.66586 6.71639 6.76967 6.97862 7.21062 7.40663 7.49681 7.74979 7.80156 8.01635 8.28143 8.53153 8.69200 8.73443 10.01520 Molecular weight = 352.19amu Principal moments of inertia in cm(-1) A = 0.023661 B = 0.001564 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.108281 B =17900.966312 C =18110.072919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.542 5.542 3 C 0.023 3.977 4 C 0.092 3.908 5 C -0.079 4.079 6 C -0.117 4.117 7 C -0.119 4.119 8 C -0.112 4.112 9 C -0.077 4.077 10 C -0.092 4.092 11 C 0.127 3.873 12 N -0.736 5.736 13 C 0.563 3.437 14 O -0.548 6.548 15 C -0.109 4.109 16 C -0.217 4.217 17 C -0.083 4.083 18 C -0.222 4.222 19 C 0.082 3.918 20 C -0.443 4.443 21 H 0.094 0.906 22 C 0.083 3.917 23 N -0.803 5.803 24 Si 0.911 3.089 25 H -0.269 1.269 26 H -0.289 1.289 27 H -0.244 1.244 28 C -0.136 4.136 29 C -0.091 4.091 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.025 0.975 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.400 0.600 46 H 0.096 0.904 47 H 0.099 0.901 48 H 0.103 0.897 49 H 0.286 0.714 50 H 0.115 0.885 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.732 20.132 -3.006 29.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.265 5.265 3 C -0.125 4.125 4 C -0.035 4.035 5 C -0.079 4.079 6 C -0.136 4.136 7 C -0.137 4.137 8 C -0.130 4.130 9 C -0.078 4.078 10 C -0.130 4.130 11 C 0.004 3.996 12 N -0.389 5.389 13 C 0.353 3.647 14 O -0.426 6.426 15 C -0.112 4.112 16 C -0.237 4.237 17 C -0.101 4.101 18 C -0.242 4.242 19 C 0.079 3.921 20 C -0.471 4.471 21 H 0.112 0.888 22 C -0.136 4.136 23 N -0.427 5.427 24 Si 0.737 3.263 25 H -0.196 1.196 26 H -0.217 1.217 27 H -0.167 1.167 28 C -0.156 4.156 29 C -0.109 4.109 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.236 0.764 46 H 0.114 0.886 47 H 0.117 0.883 48 H 0.121 0.879 49 H 0.097 0.903 50 H 0.133 0.867 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.261 19.856 -2.499 29.198 hybrid contribution -0.670 -0.173 -0.264 0.741 sum -21.931 19.683 -2.762 29.597 Atomic orbital electron populations 1.22479 0.87296 1.02792 1.00259 1.61983 1.08220 1.13621 1.42708 1.22405 1.00999 0.88514 1.00547 1.21080 1.00681 0.90070 0.91635 1.19633 0.94938 0.94765 0.98594 1.21000 0.96446 0.95694 1.00469 1.21079 0.99696 0.93559 0.99348 1.21091 0.94048 0.99825 0.98053 1.19679 0.95198 0.94056 0.98821 1.20800 0.96341 0.98219 0.97645 1.21213 0.90869 0.93072 0.94487 1.45947 1.34136 1.46851 1.12000 1.18780 0.79750 0.79396 0.86747 1.90700 1.71914 1.65132 1.14846 1.19435 0.98161 0.99712 0.93867 1.20382 1.03914 1.06475 0.92884 1.20512 0.95266 0.96504 0.97854 1.21178 1.02522 1.05899 0.94566 1.17703 0.91120 0.91948 0.91363 1.19522 1.14521 1.01933 1.11089 0.88842 1.26166 0.94089 0.98177 0.95172 1.69690 1.16989 1.18282 1.37734 0.86306 0.82991 0.77238 0.79722 1.19560 1.21652 1.16704 1.21276 0.95124 1.00318 0.98872 1.20911 0.99454 0.92500 0.98048 0.95737 0.91454 0.90766 0.91131 0.91200 0.95648 0.93898 0.89724 0.86611 0.86085 0.85953 0.90117 0.90183 0.91607 0.91595 0.76403 0.88582 0.88279 0.87892 0.90318 0.86672 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.14 60.07 0.55 0.68 16 2 N -0.54 -4.11 5.01 -252.72 -1.27 -5.37 16 3 C 0.02 0.14 9.57 60.06 0.57 0.71 16 4 C 0.09 0.70 5.12 -4.97 -0.03 0.67 16 5 C -0.08 -0.69 4.88 -104.63 -0.51 -1.20 16 6 C -0.12 -0.95 7.97 -39.59 -0.32 -1.27 16 7 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 8 C -0.11 -1.00 9.70 -39.58 -0.38 -1.39 16 9 C -0.08 -0.73 5.13 -104.62 -0.54 -1.27 16 10 C -0.09 -0.84 5.46 -27.89 -0.15 -1.00 16 11 C 0.13 1.59 5.66 -4.04 -0.02 1.57 16 12 N -0.74 -10.77 5.51 -61.23 -0.34 -11.11 16 13 C 0.56 11.12 7.77 -12.31 -0.10 11.02 16 14 O -0.55 -12.55 16.33 5.33 0.09 -12.46 16 15 C -0.11 -2.32 5.87 -105.04 -0.62 -2.94 16 16 C -0.22 -4.15 9.55 -38.92 -0.37 -4.52 16 17 C -0.08 -1.68 10.01 -39.72 -0.40 -2.08 16 18 C -0.22 -5.17 7.17 -38.81 -0.28 -5.45 16 19 C 0.08 2.06 5.10 -106.87 -0.55 1.52 16 20 C -0.44 -11.93 9.57 -37.73 -0.36 -12.29 16 21 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 22 C 0.08 2.16 5.40 -17.35 -0.09 2.06 16 23 N -0.80 -21.15 13.93 55.55 0.77 -20.38 16 24 Si 0.91 20.34 24.52 -169.99 -4.17 16.17 16 25 H -0.27 -5.77 6.71 56.52 0.38 -5.39 16 26 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.24 -5.58 6.86 56.52 0.39 -5.19 16 28 C -0.14 -3.28 9.34 -38.44 -0.36 -3.64 16 29 C -0.09 -0.85 9.36 -39.58 -0.37 -1.22 16 30 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 32 H 0.07 0.53 6.17 -51.93 -0.32 0.21 16 33 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 34 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 35 H 0.02 0.14 8.14 -51.93 -0.42 -0.29 16 36 H 0.04 0.30 8.06 -51.93 -0.42 -0.12 16 37 H 0.08 0.61 8.01 -51.93 -0.42 0.20 16 38 H 0.12 0.75 8.04 -52.49 -0.42 0.33 16 39 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 42 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.40 4.89 6.49 -40.82 -0.26 4.62 16 46 H 0.10 1.46 6.38 -52.48 -0.33 1.13 16 47 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 48 H 0.10 2.37 4.72 -52.49 -0.25 2.13 16 49 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 50 H 0.12 2.85 7.64 -52.49 -0.40 2.45 16 51 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 414.96 15.07 6.25 6.25 Total: -1.00 -30.28 414.96 -11.27 -41.55 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.91 Total: 6.75 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -4.71 Total: -21.40 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.83 Total: -36.86 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.17 Total: 16.17 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -30.28 -11.27 -41.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095394892.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.002 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds