Wall clock time and date at job start Tue Mar 31 2020 05:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35996 * 117.00244 * 2 1 4 4 C 1.38563 * 120.07496 * 359.97438 * 3 2 1 5 5 C 1.38237 * 120.00534 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.93182 * 180.02562 * 5 4 3 7 7 N 1.46503 * 109.46948 * 89.99384 * 6 5 4 8 8 C 1.46500 * 120.00065 * 269.99759 * 7 6 5 9 9 C 1.36935 * 119.99886 * 90.00561 * 7 6 5 10 10 H 1.08008 * 120.00266 * 22.36989 * 9 7 6 11 11 C 1.38810 * 119.99982 * 202.37296 * 9 7 6 12 12 N 1.31613 * 119.99947 * 11.32875 * 11 9 7 13 13 Si 1.86804 * 120.00130 * 191.32390 * 11 9 7 14 14 H 1.48502 * 109.46956 * 89.99890 * 13 11 9 15 15 H 1.48499 * 109.47111 * 210.00095 * 13 11 9 16 16 H 1.48502 * 109.47069 * 330.00286 * 13 11 9 17 17 C 1.38260 * 120.13981 * 359.71488 * 5 4 3 18 18 C 1.38238 * 120.14777 * 0.56366 * 17 5 4 19 19 C 1.38566 * 119.99914 * 359.44085 * 18 17 5 20 20 O 1.35990 * 120.07199 * 180.29909 * 19 18 17 21 21 C 1.42903 * 117.00086 * 359.97438 * 20 19 18 22 22 C 1.50702 * 109.47080 * 179.97438 * 21 20 19 23 23 C 1.38380 * 119.92930 * 269.72512 * 22 21 20 24 24 C 1.38343 * 120.30899 * 179.76484 * 23 22 21 25 25 C 1.37971 * 120.14748 * 0.50947 * 24 23 22 26 26 C 1.39609 * 119.84735 * 359.75087 * 25 24 23 27 27 C 1.43197 * 120.15243 * 179.97438 * 26 25 24 28 28 N 8.24448 * 139.67602 * 219.69153 * 2 1 3 29 29 C 1.37937 * 119.92169 * 90.00182 * 22 21 20 30 30 H 1.08996 * 109.46887 * 60.00200 * 1 2 3 31 31 H 1.08998 * 109.47111 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46962 * 300.00413 * 1 2 3 33 33 H 1.08003 * 119.99493 * 359.97438 * 4 3 2 34 34 H 1.08993 * 109.47086 * 209.99560 * 6 5 4 35 35 H 1.09001 * 109.46614 * 329.99998 * 6 5 4 36 36 H 1.08998 * 109.46521 * 94.20960 * 8 7 6 37 37 H 1.08995 * 109.47007 * 214.20503 * 8 7 6 38 38 H 1.08994 * 109.47293 * 334.21364 * 8 7 6 39 39 H 0.97002 * 119.99939 * 180.02562 * 12 11 9 40 40 H 1.08004 * 119.92515 * 180.30302 * 17 5 4 41 41 H 1.08006 * 119.99791 * 179.71564 * 18 17 5 42 42 H 1.08993 * 109.47240 * 300.00005 * 21 20 19 43 43 H 1.09002 * 109.47186 * 60.00480 * 21 20 19 44 44 H 1.08009 * 119.84405 * 0.02562 * 23 22 21 45 45 H 1.08000 * 119.92433 * 180.25969 * 24 23 22 46 46 H 1.07999 * 120.07275 * 179.76140 * 25 24 23 47 47 H 1.08001 * 120.07577 * 359.95430 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3748 -0.0005 5 6 1.9225 3.6057 -0.0011 6 6 1.1018 4.8696 -0.0011 7 7 0.8363 5.2794 1.3802 8 6 -0.3606 4.7935 2.0712 9 6 1.7067 6.1169 2.0252 10 1 2.3657 6.7546 1.4546 11 6 1.7423 6.1461 3.4126 12 7 1.1109 5.2232 4.1067 13 14 2.6866 7.4952 4.2945 14 1 1.7859 8.6499 4.5409 15 1 3.1943 6.9780 5.5906 16 1 3.8302 7.9303 3.4530 17 6 3.3031 3.6797 0.0049 18 6 4.0604 2.5232 -0.0004 19 6 3.4360 1.2862 0.0001 20 8 4.1795 0.1476 0.0011 21 6 5.6003 0.3006 0.0010 22 6 6.2518 -1.0583 0.0028 23 6 6.5554 -1.6769 1.2029 24 6 7.1491 -2.9264 1.2137 25 6 7.4522 -3.5599 0.0261 26 6 7.1536 -2.9393 -1.1883 27 6 7.4658 -3.5907 -2.4248 28 7 7.7145 -4.1053 -3.4073 29 6 6.5495 -1.6803 -1.1919 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2147 2.3196 -0.0014 34 1 1.6502 5.6589 -0.5152 35 1 0.1573 4.6895 -0.5145 36 1 -0.1113 3.9014 2.6458 37 1 -0.7311 5.5670 2.7438 38 1 -1.1298 4.5503 1.3383 39 1 1.1354 5.2439 5.0761 40 1 3.7910 4.6433 0.0094 41 1 5.1387 2.5839 -0.0003 42 1 5.9066 0.8496 -0.8893 43 1 5.9066 0.8510 0.8906 44 1 6.3239 -1.1837 2.1354 45 1 7.3795 -3.4053 2.1539 46 1 7.9191 -4.5337 0.0360 47 1 6.3154 -1.1948 -2.1278 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095398044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:49 Heat of formation + Delta-G solvation = 37.502169 kcal Electronic energy + Delta-G solvation = -29600.416536 eV Core-core repulsion = 25522.330178 eV Total energy + Delta-G solvation = -4078.086358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.36335 -39.77329 -38.14762 -37.07499 -36.68809 -35.07396 -32.71631 -31.69507 -31.56186 -29.83190 -29.59572 -27.30189 -26.77004 -25.88394 -25.12435 -24.27787 -22.59198 -21.88225 -21.41076 -20.34644 -18.73021 -18.16241 -16.79741 -16.75510 -16.66163 -16.34544 -16.07539 -15.51174 -14.91705 -14.83106 -14.67551 -14.45381 -14.25602 -14.07521 -13.92128 -13.63312 -13.48029 -13.37212 -13.15276 -12.99707 -12.72096 -12.36584 -12.27619 -12.19669 -11.81504 -11.60488 -11.43272 -11.23340 -10.98571 -10.90830 -10.81792 -10.71212 -10.66057 -10.46359 -10.21620 -10.01733 -9.87540 -9.38704 -9.29334 -8.59147 -8.19670 -7.31841 -6.79990 -5.76408 -3.20778 0.38425 0.82259 1.80504 1.98689 2.31837 2.53456 3.26761 3.35288 3.41452 3.42750 3.50389 3.60488 3.72778 4.21900 4.37359 4.42498 4.49554 4.63591 4.80664 4.88861 5.07883 5.17397 5.18764 5.30438 5.37625 5.38926 5.41419 5.51418 5.53294 5.61581 5.67867 5.71494 5.79918 5.83154 5.89911 5.97317 6.05863 6.09566 6.33567 6.36626 6.57823 6.65408 6.71293 6.82900 7.13627 7.18973 7.30487 7.34749 7.36655 7.69523 7.77394 7.95136 8.35106 9.19005 9.81356 10.30391 11.28243 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.013018 B = 0.002311 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.336125 B =12111.675590 C =13104.826767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.095 3.905 4 C -0.163 4.163 5 C -0.071 4.071 6 C 0.182 3.818 7 N -0.590 5.590 8 C 0.164 3.836 9 C -0.251 4.251 10 H 0.070 0.930 11 C 0.003 3.997 12 N -0.904 5.904 13 Si 0.905 3.095 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.279 1.279 17 C -0.098 4.098 18 C -0.172 4.172 19 C 0.076 3.924 20 O -0.303 6.303 21 C 0.099 3.901 22 C -0.087 4.087 23 C -0.063 4.063 24 C -0.122 4.122 25 C -0.064 4.064 26 C -0.036 4.036 27 C 0.257 3.743 28 N -0.419 5.419 29 C -0.046 4.046 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.126 0.874 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.028 0.972 37 H 0.047 0.953 38 H -0.004 1.004 39 H 0.253 0.747 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.133 0.867 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.933 -13.784 -7.232 17.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.051 3.949 4 C -0.183 4.183 5 C -0.075 4.075 6 C 0.055 3.945 7 N -0.311 5.311 8 C 0.019 3.981 9 C -0.381 4.381 10 H 0.088 0.912 11 C -0.196 4.196 12 N -0.548 5.548 13 Si 0.735 3.265 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.204 1.204 17 C -0.117 4.117 18 C -0.191 4.191 19 C 0.031 3.969 20 O -0.218 6.218 21 C 0.023 3.977 22 C -0.087 4.087 23 C -0.081 4.081 24 C -0.140 4.140 25 C -0.085 4.085 26 C -0.039 4.039 27 C -0.058 4.058 28 N -0.095 5.095 29 C -0.066 4.066 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.144 0.856 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.065 0.935 38 H 0.015 0.985 39 H 0.063 0.937 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.153 0.847 45 H 0.155 0.845 46 H 0.151 0.849 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.281 -14.948 -8.551 19.109 hybrid contribution 0.382 1.063 1.243 1.679 sum 8.663 -13.885 -7.308 17.924 Atomic orbital electron populations 1.22975 0.79169 1.03144 1.01348 1.86092 1.20568 1.26500 1.89578 1.18161 0.88899 0.84886 1.02999 1.20870 0.99386 0.91092 1.06929 1.20911 0.94555 0.96458 0.95589 1.19953 0.95571 0.90778 0.88244 1.44121 1.23389 1.53395 1.10206 1.20820 0.85174 0.99101 0.92984 1.19221 1.16641 1.13222 0.89023 0.91213 1.25070 0.99634 0.97999 0.96908 1.70068 1.46069 1.33035 1.05675 0.86249 0.79604 0.81452 0.79198 1.21465 1.21747 1.20442 1.20702 0.93443 0.97383 1.00209 1.20948 0.99584 0.91329 1.07234 1.17973 0.87823 0.85433 1.05691 1.86160 1.16597 1.29016 1.90043 1.21491 0.80225 0.93390 1.02575 1.19463 0.99826 0.96420 0.92991 1.21437 0.94190 0.94404 0.98118 1.21118 0.99572 0.95199 0.98149 1.21229 0.97000 0.99467 0.90773 1.15927 1.05670 0.95139 0.87162 1.25712 0.93601 0.93576 0.92932 1.81292 1.08945 1.08615 1.10600 1.21113 0.94340 0.92460 0.98736 0.93071 0.88877 0.92626 0.85613 0.92669 0.93531 0.95370 0.93452 0.98550 0.93707 0.85955 0.85683 0.91117 0.90815 0.84679 0.84526 0.84874 0.84684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.36 16 2 O -0.31 -5.25 10.28 -34.23 -0.35 -5.61 16 3 C 0.10 1.71 6.70 -39.12 -0.26 1.44 16 4 C -0.16 -2.94 8.69 -39.46 -0.34 -3.29 16 5 C -0.07 -1.36 5.46 -104.61 -0.57 -1.93 16 6 C 0.18 3.61 5.83 -5.19 -0.03 3.58 16 7 N -0.59 -14.35 2.91 -182.51 -0.53 -14.88 16 8 C 0.16 3.94 9.01 59.85 0.54 4.48 16 9 C -0.25 -6.65 9.67 -15.06 -0.15 -6.80 16 10 H 0.07 1.79 7.84 -52.48 -0.41 1.38 16 11 C 0.00 0.07 5.13 -17.43 -0.09 -0.02 16 12 N -0.90 -25.90 10.59 55.49 0.59 -25.31 16 13 Si 0.90 21.37 29.57 -169.99 -5.03 16.35 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 C -0.10 -1.78 9.69 -39.57 -0.38 -2.16 16 18 C -0.17 -2.77 9.04 -39.46 -0.36 -3.13 16 19 C 0.08 1.28 6.70 -39.12 -0.26 1.02 16 20 O -0.30 -4.59 9.91 -34.21 -0.34 -4.93 16 21 C 0.10 1.05 4.86 36.01 0.18 1.23 16 22 C -0.09 -0.80 5.50 -104.68 -0.58 -1.37 16 23 C -0.06 -0.49 9.69 -39.49 -0.38 -0.88 16 24 C -0.12 -0.77 10.03 -39.64 -0.40 -1.17 16 25 C -0.06 -0.42 9.76 -39.17 -0.38 -0.80 16 26 C -0.04 -0.29 5.73 -106.93 -0.61 -0.91 16 27 C 0.26 2.55 15.33 -22.45 -0.34 2.21 16 28 N -0.42 -5.12 18.54 41.86 0.78 -4.35 16 29 C -0.05 -0.39 9.41 -39.16 -0.37 -0.76 16 30 H 0.05 0.57 7.66 -51.93 -0.40 0.18 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.72 7.66 -51.93 -0.40 0.32 16 33 H 0.13 2.09 6.30 -52.48 -0.33 1.76 16 34 H 0.06 1.04 7.98 -51.93 -0.41 0.63 16 35 H 0.05 0.83 7.81 -51.93 -0.41 0.43 16 36 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 37 H 0.05 1.22 7.19 -51.93 -0.37 0.85 16 38 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 39 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 41 H 0.13 1.62 6.30 -52.48 -0.33 1.29 16 42 H 0.07 0.65 7.61 -51.93 -0.39 0.26 16 43 H 0.07 0.73 7.60 -51.93 -0.39 0.34 16 44 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 45 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 46 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 47 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 405.11 15.07 6.10 6.10 Total: -1.00 -32.95 405.11 -8.90 -41.85 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.32 Total: -1.32 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -3.80 Total: -7.90 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.83 Total: -44.54 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -0.69 Total: -10.54 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.95 -8.90 -41.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095398044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.349 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds