Wall clock time and date at job start Tue Mar 31 2020 05:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99574 * 2 1 4 4 H 1.48497 * 109.47224 * 270.00161 * 3 2 1 5 5 H 1.48499 * 109.46959 * 30.00197 * 3 2 1 6 6 H 1.48500 * 109.47060 * 149.99652 * 3 2 1 7 7 C 1.37870 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00354 * 359.97438 * 7 2 1 9 9 S 1.76200 * 120.00010 * 180.02562 * 7 2 1 10 10 O 1.42099 * 106.40205 * 66.46148 * 9 7 2 11 11 O 1.42097 * 106.40452 * 293.53865 * 9 7 2 12 12 N 1.65603 * 107.21836 * 180.02562 * 9 7 2 13 13 C 1.46496 * 120.00313 * 65.00002 * 12 9 7 14 14 C 1.52997 * 109.47294 * 164.99867 * 13 12 9 15 15 C 1.53006 * 109.47127 * 179.97438 * 14 13 12 16 16 O 1.42895 * 109.47036 * 179.97438 * 15 14 13 17 17 C 1.35951 * 116.99921 * 179.97438 * 16 15 14 18 18 C 1.38697 * 120.04454 * 359.73070 * 17 16 15 19 19 C 1.38154 * 119.96855 * 179.67684 * 18 17 16 20 20 C 1.38379 * 120.06092 * 0.61563 * 19 18 17 21 21 Cl 1.73601 * 119.95404 * 179.70413 * 20 19 18 22 22 C 1.38347 * 120.09449 * 359.67915 * 20 19 18 23 23 C 1.38256 * 120.02933 * 0.02562 * 22 20 19 24 24 Cl 1.73597 * 120.03271 * 179.97438 * 23 22 20 25 25 H 0.96990 * 120.00325 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99521 * 245.00260 * 12 9 7 27 27 H 1.09001 * 109.47054 * 44.99598 * 13 12 9 28 28 H 1.09004 * 109.47074 * 285.00112 * 13 12 9 29 29 H 1.09001 * 109.46832 * 60.00150 * 14 13 12 30 30 H 1.08993 * 109.47194 * 299.99671 * 14 13 12 31 31 H 1.09001 * 109.46801 * 300.00272 * 15 14 13 32 32 H 1.09001 * 109.46998 * 59.99868 * 15 14 13 33 33 H 1.07999 * 120.01555 * 359.97164 * 18 17 16 34 34 H 1.08000 * 119.96967 * 180.32127 * 19 18 17 35 35 H 1.07999 * 119.98465 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 16 3.7666 -1.1938 0.0001 10 8 4.1674 -0.6502 1.2504 11 8 4.1684 -0.6486 -1.2490 12 7 4.2569 -2.7756 -0.0014 13 6 3.9621 -3.6328 -1.1523 14 6 4.8210 -4.8969 -1.0800 15 6 4.5127 -5.7924 -2.2817 16 8 5.3153 -6.9727 -2.2145 17 6 5.1621 -7.8810 -3.2144 18 6 4.2540 -7.6432 -4.2355 19 6 4.1044 -8.5642 -5.2543 20 6 4.8504 -9.7296 -5.2504 21 17 4.6546 -10.8885 -6.5280 22 6 5.7526 -9.9723 -4.2300 23 6 5.9098 -9.0504 -3.2116 24 17 7.0413 -9.3552 -1.9308 25 1 -0.4850 0.8399 0.0004 26 1 4.7393 -3.1346 0.7598 27 1 4.1853 -3.0940 -2.0732 28 1 2.9077 -3.9087 -1.1392 29 1 4.5978 -5.4356 -0.1591 30 1 5.8754 -4.6210 -1.0932 31 1 3.4582 -6.0682 -2.2681 32 1 4.7355 -5.2538 -3.2028 33 1 3.6675 -6.7363 -4.2366 34 1 3.4010 -8.3766 -6.0521 35 1 6.3342 -10.8822 -4.2289 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439639.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:00 Heat of formation + Delta-G solvation = -113.505439 kcal Electronic energy + Delta-G solvation = -23130.380500 eV Core-core repulsion = 19114.248281 eV Total energy + Delta-G solvation = -4016.132218 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 353.009 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.67446 -38.33453 -37.00218 -36.48518 -35.88272 -35.46216 -34.47496 -33.07250 -31.73732 -31.35715 -29.74685 -26.46286 -25.63788 -23.44853 -22.68396 -21.56201 -19.12404 -18.84244 -17.59531 -17.15448 -16.81464 -16.66978 -16.52763 -15.62954 -15.22728 -15.07229 -14.77144 -14.52671 -14.14541 -13.87105 -13.64343 -13.32932 -13.00312 -12.92027 -12.68598 -12.53869 -12.14087 -12.03308 -11.53724 -11.46096 -11.35050 -11.25388 -11.23371 -11.17513 -10.83184 -10.77212 -10.66569 -10.53604 -9.88163 -9.46371 -9.30418 -9.24740 -8.65363 -8.55599 -6.84349 -5.38781 0.54893 0.64152 1.50155 1.92404 2.00197 2.71237 2.97421 3.05086 3.15100 3.24460 3.92153 4.15466 4.27361 4.33475 4.52503 4.55878 4.70315 4.74801 4.83306 5.00054 5.08952 5.16762 5.25106 5.30674 5.42538 5.55336 5.63638 5.70780 5.89442 5.97309 6.08848 6.15787 6.50924 6.84787 7.43358 7.65492 8.15558 8.66616 10.27874 Molecular weight = 353.01amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.001965 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.033913 B =14246.054196 C =15249.461812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.152 3.848 3 Si 0.803 3.197 4 H -0.246 1.246 5 H -0.255 1.255 6 H -0.220 1.220 7 C -1.016 5.016 8 H 0.121 0.879 9 S 2.677 3.323 10 O -1.007 7.007 11 O -1.011 7.011 12 N -1.124 6.124 13 C 0.129 3.871 14 C -0.126 4.126 15 C 0.055 3.945 16 O -0.298 6.298 17 C 0.153 3.847 18 C -0.187 4.187 19 C -0.062 4.062 20 C -0.068 4.068 21 Cl -0.062 7.062 22 C -0.064 4.064 23 C -0.064 4.064 24 Cl -0.044 7.044 25 H 0.281 0.719 26 H 0.407 0.593 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.151 0.849 34 H 0.143 0.857 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.948 -20.968 -10.120 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.067 4.067 3 Si 0.623 3.377 4 H -0.170 1.170 5 H -0.179 1.179 6 H -0.142 1.142 7 C -1.150 5.150 8 H 0.139 0.861 9 S 2.778 3.222 10 O -0.998 6.998 11 O -1.001 7.001 12 N -0.880 5.880 13 C 0.002 3.998 14 C -0.165 4.165 15 C -0.020 4.020 16 O -0.210 6.210 17 C 0.105 3.895 18 C -0.206 4.206 19 C -0.080 4.080 20 C -0.095 4.095 21 Cl -0.034 7.034 22 C -0.084 4.084 23 C -0.091 4.091 24 Cl -0.015 7.015 25 H 0.091 0.909 26 H 0.238 0.762 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.169 0.831 34 H 0.161 0.839 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.473 -20.189 -10.105 24.484 hybrid contribution -0.434 0.178 0.180 0.503 sum 9.039 -20.011 -9.925 24.096 Atomic orbital electron populations 1.69983 1.06606 1.29102 1.39554 1.24434 0.94798 0.98872 0.88605 0.87841 0.83571 0.84477 0.81812 1.17017 1.17943 1.14208 1.30440 1.15608 1.02134 1.66808 0.86108 1.01312 0.77289 0.70307 0.73259 1.93482 1.85523 1.75762 1.44990 1.93403 1.85046 1.76001 1.45675 1.55468 1.74435 1.31556 1.26564 1.20921 0.98805 0.90358 0.89710 1.21739 1.02123 0.94961 0.97639 1.22964 0.94851 0.83677 1.00516 1.86174 1.61927 1.29557 1.43349 1.18760 0.93404 0.88857 0.88467 1.21306 1.01575 1.02464 0.95243 1.20984 0.97576 0.91273 0.98212 1.20587 1.01925 0.93689 0.93296 1.98381 1.96820 1.58587 1.49570 1.20734 0.97395 0.99036 0.91212 1.19995 0.99060 0.95239 0.94846 1.98392 1.58900 1.95480 1.48761 0.90872 0.76164 0.90239 0.91425 0.89970 0.89946 0.90847 0.90876 0.83121 0.83885 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.27 13.96 55.43 0.77 -22.50 16 2 C 0.15 4.27 5.47 -17.82 -0.10 4.18 16 3 Si 0.80 20.18 26.54 -169.99 -4.51 15.67 16 4 H -0.25 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.22 -5.63 5.61 56.52 0.32 -5.32 16 7 C -1.02 -27.22 10.26 30.60 0.31 -26.91 16 8 H 0.12 3.24 8.06 -52.48 -0.42 2.82 16 9 S 2.68 63.64 4.24 -107.50 -0.46 63.19 16 10 O -1.01 -26.19 16.02 -57.17 -0.92 -27.11 16 11 O -1.01 -25.77 16.30 -57.17 -0.93 -26.70 16 12 N -1.12 -19.62 6.00 -10.61 -0.06 -19.68 16 13 C 0.13 1.85 6.22 -4.05 -0.03 1.82 16 14 C -0.13 -1.36 5.73 -26.73 -0.15 -1.51 16 15 C 0.06 0.51 4.74 37.16 0.18 0.69 16 16 O -0.30 -3.15 9.60 -19.59 -0.19 -3.34 16 17 C 0.15 1.50 6.68 -39.20 -0.26 1.23 16 18 C -0.19 -1.50 9.04 -39.44 -0.36 -1.86 16 19 C -0.06 -0.46 9.82 -39.56 -0.39 -0.85 16 20 C -0.07 -0.54 6.32 -39.49 -0.25 -0.79 16 21 Cl -0.06 -0.46 28.95 -51.86 -1.50 -1.97 16 22 C -0.06 -0.52 9.61 -39.53 -0.38 -0.90 16 23 C -0.06 -0.61 6.33 -39.37 -0.25 -0.86 16 24 Cl -0.04 -0.43 28.50 -51.86 -1.48 -1.91 16 25 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.41 6.01 8.65 -34.47 -0.30 5.71 16 27 H 0.08 1.15 7.75 -51.93 -0.40 0.75 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.58 7.65 -51.93 -0.40 0.19 16 32 H 0.07 0.59 7.68 -51.93 -0.40 0.19 16 33 H 0.15 0.96 6.30 -52.49 -0.33 0.63 16 34 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 35 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 345.07 15.07 5.20 5.20 Total: -1.00 -32.58 345.07 -9.33 -41.91 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -3.58 Total: 2.99 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -1.67 Total: -25.75 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.71 Total: -42.17 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -2.04 Total: -57.15 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.51 Total: 15.67 kcal Atomic # 16 Polarization: 63.64 SS G_CDS: -0.46 Total: 63.19 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -2.98 Total: -3.88 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.58 -9.33 -41.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439639.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.595 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds