Wall clock time and date at job start Tue Mar 31 2020 06:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46721 * 2 1 4 4 H 1.08994 * 109.47677 * 306.06099 * 3 2 1 5 5 N 1.46504 * 109.46966 * 186.06040 * 3 2 1 6 6 S 1.65596 * 119.99794 * 97.93623 * 5 3 2 7 7 O 1.42103 * 106.40340 * 177.83711 * 6 5 3 8 8 O 1.42104 * 106.40471 * 310.75446 * 6 5 3 9 9 C 1.76199 * 107.21802 * 64.29445 * 6 5 3 10 10 H 1.07995 * 120.00046 * 0.02562 * 9 6 5 11 11 C 1.37877 * 119.99917 * 179.97438 * 9 6 5 12 12 N 1.31511 * 120.00304 * 359.97438 * 11 9 6 13 13 Si 1.86805 * 119.99635 * 180.02562 * 11 9 6 14 14 H 1.48505 * 109.47101 * 90.00417 * 13 11 9 15 15 H 1.48508 * 109.46973 * 209.99853 * 13 11 9 16 16 H 1.48500 * 109.47338 * 330.00067 * 13 11 9 17 17 C 1.50705 * 109.46798 * 66.06754 * 3 2 1 18 18 C 1.38266 * 119.94100 * 259.99204 * 17 3 2 19 19 C 1.38147 * 120.05739 * 180.02562 * 18 17 3 20 20 C 1.38737 * 119.94114 * 0.02562 * 19 18 17 21 21 O 1.35898 * 120.05105 * 179.97438 * 20 19 18 22 22 C 1.42899 * 117.00335 * 354.22540 * 21 20 19 23 23 C 1.54972 * 110.92088 * 89.77311 * 22 21 20 24 24 C 1.54261 * 104.15612 * 156.29730 * 23 22 21 25 25 C 1.53873 * 106.64220 * 336.44228 * 24 23 22 26 26 C 1.54264 * 106.59972 * 359.97438 * 25 24 23 27 27 C 1.38729 * 119.88442 * 0.27578 * 20 19 18 28 28 C 1.38137 * 119.95146 * 359.42566 * 27 20 19 29 29 H 1.08999 * 109.46954 * 60.60609 * 1 2 3 30 30 H 1.08997 * 109.47000 * 180.60021 * 1 2 3 31 31 H 1.08994 * 109.47560 * 300.60359 * 1 2 3 32 32 H 1.08996 * 109.47155 * 240.00364 * 2 1 3 33 33 H 1.09001 * 109.47162 * 120.00202 * 2 1 3 34 34 H 0.96996 * 119.99946 * 277.93837 * 5 3 2 35 35 H 0.96995 * 120.00039 * 179.97438 * 12 11 9 36 36 H 1.08001 * 119.97329 * 0.02978 * 18 17 3 37 37 H 1.08001 * 120.02895 * 179.97438 * 19 18 17 38 38 H 1.08996 * 110.66920 * 326.46925 * 22 21 20 39 39 H 1.09001 * 110.47461 * 37.64242 * 23 22 21 40 40 H 1.09002 * 110.52426 * 274.97393 * 23 22 21 41 41 H 1.09002 * 110.03178 * 217.13458 * 24 23 22 42 42 H 1.08999 * 110.03462 * 95.75619 * 24 23 22 43 43 H 1.09007 * 110.03299 * 119.26592 * 25 24 23 44 44 H 1.09002 * 110.03493 * 240.64608 * 25 24 23 45 45 H 1.09004 * 110.48691 * 142.28658 * 26 25 24 46 46 H 1.09004 * 110.48699 * 264.80119 * 26 25 24 47 47 H 1.08010 * 120.02329 * 179.72257 * 27 20 19 48 48 H 1.07996 * 119.98010 * 180.32166 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5908 1.9868 -0.8307 5 7 3.4977 1.4452 -0.1458 6 16 4.1805 1.6946 -1.6337 7 8 5.5876 1.6901 -1.4354 8 8 3.5194 0.8134 -2.5314 9 6 3.7540 3.3287 -2.1361 10 1 3.1497 3.9510 -1.4927 11 6 4.1925 3.8133 -3.3501 12 7 4.9296 3.0560 -4.1329 13 14 3.7409 5.5460 -3.8823 14 1 4.7798 6.4958 -3.4090 15 1 3.6566 5.6026 -5.3639 16 1 2.4275 5.9171 -3.2971 17 6 1.6639 2.1082 1.2987 18 6 0.5669 2.9482 1.3514 19 6 0.2203 3.5600 2.5405 20 6 0.9744 3.3315 3.6823 21 8 0.6358 3.9326 4.8532 22 6 -0.4291 4.8845 4.8095 23 6 -1.7964 4.1968 5.0529 24 6 -2.7013 5.3312 5.5763 25 6 -1.7685 6.3984 6.1751 26 6 -0.3282 5.8756 5.9956 27 6 2.0783 2.4932 3.6253 28 6 2.4171 1.8789 2.4353 29 1 -0.3633 0.5044 -0.8954 30 1 -0.3633 -1.0276 0.0108 31 1 -0.3634 0.5231 0.8844 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 4.0629 1.3009 0.6291 35 1 5.2378 3.3968 -4.9871 36 1 -0.0197 3.1260 0.4621 37 1 -0.6365 4.2163 2.5810 38 1 -0.4295 5.4181 3.8591 39 1 -1.6996 3.4099 5.8009 40 1 -2.1919 3.7924 4.1212 41 1 -3.3728 4.9485 6.3450 42 1 -3.2782 5.7575 4.7556 43 1 -1.8920 7.3425 5.6445 44 1 -1.9877 6.5342 7.2342 45 1 0.3475 6.6953 5.7513 46 1 0.0064 5.3622 6.8970 47 1 2.6696 2.3172 4.5119 48 1 3.2733 1.2222 2.3917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439684.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:24 Heat of formation + Delta-G solvation = -126.898118 kcal Electronic energy + Delta-G solvation = -29525.308213 eV Core-core repulsion = 25477.818212 eV Total energy + Delta-G solvation = -4047.490000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.46666 -38.80855 -36.95250 -35.37725 -34.96508 -33.90748 -33.07047 -31.68601 -30.89948 -29.73288 -29.06798 -28.10499 -26.11276 -25.02753 -23.17543 -22.23306 -21.05980 -20.66884 -19.96422 -19.01715 -18.45838 -17.41105 -16.59773 -16.32120 -16.03899 -15.61694 -15.19373 -14.89615 -14.82713 -14.35544 -14.23492 -14.05446 -13.86361 -13.65540 -13.44416 -13.31807 -13.06538 -12.70878 -12.55999 -12.05048 -11.97013 -11.85757 -11.65200 -11.57838 -11.52585 -11.27924 -11.20367 -11.16765 -11.02593 -10.83037 -10.70608 -10.61768 -10.59505 -10.52702 -10.26508 -10.16333 -10.04361 -9.22951 -9.02199 -8.89645 -8.51584 -7.97623 -6.68181 -5.29392 1.43204 1.50088 2.38606 3.06378 3.07579 3.14466 3.20561 3.83172 4.08109 4.13538 4.21344 4.49003 4.66094 4.75117 4.75945 4.86502 4.95883 5.00429 5.01416 5.08166 5.12493 5.22292 5.35298 5.37851 5.44694 5.49055 5.51325 5.52266 5.63403 5.66886 5.71821 5.80017 5.81769 5.83719 5.91447 5.92624 6.07541 6.13558 6.27238 6.33492 6.40641 6.42589 6.51650 6.63419 6.74072 6.86156 6.99832 7.34700 7.43961 7.91790 8.01107 8.91492 10.26015 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.012458 B = 0.002806 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.050671 B = 9977.577202 C =11054.938062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.204 3.796 4 H 0.097 0.903 5 N -1.130 6.130 6 S 2.714 3.286 7 O -1.008 7.008 8 O -1.004 7.004 9 C -1.020 5.020 10 H 0.102 0.898 11 C 0.134 3.866 12 N -0.846 5.846 13 Si 0.918 3.082 14 H -0.267 1.267 15 H -0.275 1.275 16 H -0.263 1.263 17 C -0.107 4.107 18 C -0.071 4.071 19 C -0.207 4.207 20 C 0.121 3.879 21 O -0.308 6.308 22 C 0.077 3.923 23 C -0.147 4.147 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.150 4.150 28 C -0.070 4.070 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.400 0.600 35 H 0.290 0.710 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.127 0.873 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.716 3.353 18.419 23.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.095 3.905 4 H 0.115 0.885 5 N -0.883 5.883 6 S 2.814 3.186 7 O -0.998 6.998 8 O -0.994 6.994 9 C -1.153 5.153 10 H 0.120 0.880 11 C -0.084 4.084 12 N -0.475 5.475 13 Si 0.742 3.258 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.187 1.187 17 C -0.109 4.109 18 C -0.089 4.089 19 C -0.225 4.225 20 C 0.076 3.924 21 O -0.222 6.222 22 C 0.020 3.980 23 C -0.185 4.185 24 C -0.161 4.161 25 C -0.161 4.161 26 C -0.156 4.156 27 C -0.169 4.169 28 C -0.088 4.088 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.231 0.769 35 H 0.101 0.899 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.145 0.855 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.120 2.664 17.805 22.880 hybrid contribution -0.381 1.581 -0.023 1.626 sum -14.501 4.245 17.781 23.334 Atomic orbital electron populations 1.21759 0.95756 1.01444 1.01864 1.22054 0.95866 0.96517 1.03157 1.19483 0.81106 0.95249 0.94624 0.88528 1.56170 1.12443 1.90681 1.29025 1.00439 0.72141 0.76146 0.69852 1.93374 1.32066 1.89492 1.84886 1.93363 1.76399 1.67703 1.61956 1.30562 1.47373 1.24285 1.13073 0.87989 1.24722 0.90279 0.99477 0.93910 1.69895 1.28887 1.37528 1.11219 0.86203 0.79852 0.81703 0.78028 1.19241 1.20005 1.18694 1.20055 0.96245 0.98918 0.95692 1.20857 0.96104 0.94745 0.97237 1.21185 1.02657 1.05454 0.93233 1.18951 0.94414 0.94225 0.84812 1.86069 1.52000 1.54403 1.29773 1.23494 0.85595 0.89011 0.99893 1.22895 0.94791 0.98639 1.02152 1.22049 0.97782 0.95666 1.00610 1.22079 0.93858 0.98654 1.01471 1.22383 0.97360 0.97826 0.98047 1.20357 0.97117 1.00412 0.99014 1.20749 0.98757 0.98150 0.91187 0.92405 0.92907 0.92733 0.89916 0.92002 0.76853 0.89939 0.85495 0.85654 0.89975 0.90401 0.90969 0.91360 0.91471 0.91379 0.91182 0.90752 0.90274 0.85478 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.66 37.16 0.36 -1.56 16 2 C -0.14 -2.09 5.70 -26.73 -0.15 -2.24 16 3 C 0.20 3.46 2.46 -69.08 -0.17 3.29 16 4 H 0.10 1.75 7.68 -51.93 -0.40 1.35 16 5 N -1.13 -22.05 5.39 -5.88 -0.03 -22.08 16 6 S 2.71 70.93 4.92 -107.50 -0.53 70.40 16 7 O -1.01 -29.47 18.02 -57.17 -1.03 -30.50 16 8 O -1.00 -28.54 17.56 -57.17 -1.00 -29.55 16 9 C -1.02 -27.80 9.56 30.60 0.29 -27.51 16 10 H 0.10 2.56 7.81 -52.49 -0.41 2.15 16 11 C 0.13 3.73 5.46 -17.82 -0.10 3.63 16 12 N -0.85 -24.84 13.19 55.43 0.73 -24.11 16 13 Si 0.92 20.58 29.54 -169.99 -5.02 15.55 16 14 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 15 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 17 C -0.11 -1.59 4.27 -104.60 -0.45 -2.03 16 18 C -0.07 -0.95 8.75 -39.60 -0.35 -1.30 16 19 C -0.21 -2.55 8.89 -39.43 -0.35 -2.90 16 20 C 0.12 1.56 6.67 -39.22 -0.26 1.30 16 21 O -0.31 -3.70 9.93 -19.42 -0.19 -3.90 16 22 C 0.08 0.71 2.68 -24.69 -0.07 0.64 16 23 C -0.15 -1.16 6.37 -25.03 -0.16 -1.32 16 24 C -0.12 -0.77 6.80 -25.62 -0.17 -0.94 16 25 C -0.12 -0.74 6.80 -25.61 -0.17 -0.91 16 26 C -0.12 -0.90 6.55 -25.07 -0.16 -1.07 16 27 C -0.15 -1.96 9.99 -39.44 -0.39 -2.35 16 28 C -0.07 -0.96 9.17 -39.61 -0.36 -1.32 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.64 6.75 -51.93 -0.35 0.29 16 32 H 0.08 1.44 7.91 -51.93 -0.41 1.03 16 33 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 34 H 0.40 6.80 7.13 -34.47 -0.25 6.55 16 35 H 0.29 7.67 8.31 -40.82 -0.34 7.33 16 36 H 0.13 1.54 8.03 -52.49 -0.42 1.12 16 37 H 0.13 1.29 5.52 -52.49 -0.29 1.00 16 38 H 0.08 0.75 6.31 -51.93 -0.33 0.43 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.57 7.64 -51.93 -0.40 0.17 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 48 H 0.13 1.58 6.80 -52.49 -0.36 1.23 16 LS Contribution 398.99 15.07 6.01 6.01 Total: -1.00 -34.89 398.99 -11.12 -46.02 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -7.39 Total: 8.75 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: -2.67 Total: -36.60 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.70 Total: -46.19 kcal Atomic # 8 Polarization: -61.72 SS G_CDS: -2.23 Total: -63.95 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 70.93 SS G_CDS: -0.53 Total: 70.40 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.89 -11.12 -46.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439684.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.881 kcal (2) G-P(sol) polarization free energy of solvation -34.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds