Wall clock time and date at job start Tue Mar 31 2020 06:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47079 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54438 * 3 2 1 5 5 N 1.46500 * 109.47074 * 65.54611 * 3 2 1 6 6 S 1.65602 * 119.99801 * 214.30926 * 5 3 2 7 7 O 1.42101 * 106.39973 * 178.27313 * 6 5 3 8 8 O 1.42098 * 106.40182 * 311.19725 * 6 5 3 9 9 C 1.76204 * 107.21749 * 64.73808 * 6 5 3 10 10 H 1.07998 * 119.99914 * 4.64263 * 9 6 5 11 11 C 1.37882 * 119.99836 * 184.64215 * 9 6 5 12 12 N 1.31509 * 119.99877 * 359.97438 * 11 9 6 13 13 Si 1.86802 * 119.99465 * 179.97438 * 11 9 6 14 14 H 1.48503 * 109.47264 * 60.00107 * 13 11 9 15 15 H 1.48508 * 109.46458 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47359 * 299.99562 * 13 11 9 17 17 C 1.50700 * 109.47097 * 185.54261 * 3 2 1 18 18 C 1.38265 * 119.94030 * 99.99865 * 17 3 2 19 19 C 1.38149 * 120.04973 * 179.97438 * 18 17 3 20 20 C 1.38729 * 119.94748 * 0.02562 * 19 18 17 21 21 O 1.35907 * 120.05354 * 180.02562 * 20 19 18 22 22 C 1.42901 * 116.99779 * 184.50972 * 21 20 19 23 23 C 1.55231 * 110.58308 * 271.23800 * 22 21 20 24 24 C 1.54883 * 102.59077 * 203.33941 * 23 22 21 25 25 C 1.54271 * 104.31404 * 37.92901 * 24 23 22 26 26 C 1.53876 * 106.59671 * 336.32632 * 25 24 23 27 27 C 1.38732 * 119.88865 * 0.27392 * 20 19 18 28 28 C 1.38144 * 119.94167 * 359.47356 * 27 20 19 29 29 H 1.08999 * 109.46542 * 64.62456 * 1 2 3 30 30 H 1.08996 * 109.46633 * 184.62644 * 1 2 3 31 31 H 1.08996 * 109.46966 * 304.62381 * 1 2 3 32 32 H 1.08990 * 109.47244 * 239.99902 * 2 1 3 33 33 H 1.09004 * 109.46819 * 119.99609 * 2 1 3 34 34 H 0.96998 * 120.00373 * 34.30711 * 5 3 2 35 35 H 0.97002 * 119.99467 * 180.02562 * 12 11 9 36 36 H 1.07992 * 119.97890 * 0.02562 * 18 17 3 37 37 H 1.08003 * 120.02216 * 179.97438 * 19 18 17 38 38 H 1.09010 * 110.43379 * 33.82361 * 22 21 20 39 39 H 1.09004 * 110.90081 * 85.04602 * 23 22 21 40 40 H 1.09003 * 110.76187 * 321.56841 * 23 22 21 41 41 H 1.09004 * 110.48690 * 279.18461 * 24 23 22 42 42 H 1.09001 * 110.49103 * 156.67064 * 24 23 22 43 43 H 1.09003 * 110.03168 * 95.60825 * 25 24 23 44 44 H 1.09000 * 110.03471 * 216.99135 * 25 24 23 45 45 H 1.08995 * 110.03367 * 119.27852 * 26 25 24 46 46 H 1.09002 * 110.03507 * 240.66818 * 26 25 24 47 47 H 1.08001 * 120.02495 * 179.71785 * 27 20 19 48 48 H 1.07999 * 119.97053 * 180.27315 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5979 1.9842 -0.8362 5 7 1.6638 2.0935 1.2573 6 16 1.2837 3.7053 1.2738 7 8 0.9286 4.0200 2.6132 8 8 2.3230 4.3698 0.5685 9 6 -0.1784 3.9062 0.3112 10 1 -0.6844 3.0403 -0.0894 11 6 -0.6765 5.1690 0.0694 12 7 -0.0605 6.2234 0.5577 13 14 -2.2261 5.3820 -0.9517 14 1 -3.3530 4.6715 -0.2954 15 1 -2.5505 6.8269 -1.0634 16 1 -2.0072 4.8172 -2.3074 17 6 3.5408 1.4448 -0.1372 18 6 4.1209 1.6917 -1.3678 19 6 5.4964 1.6948 -1.4960 20 6 6.2957 1.4494 -0.3891 21 8 7.6491 1.4524 -0.5127 22 6 8.4071 1.0948 0.6448 23 6 8.7041 2.3481 1.5113 24 6 9.9629 1.9191 2.3050 25 6 10.7910 1.1000 1.2934 26 6 9.8017 0.5759 0.2378 27 6 5.7111 1.1957 0.8432 28 6 4.3352 1.1989 0.9674 29 1 -0.3632 0.4404 -0.9285 30 1 -0.3632 -1.0243 0.0829 31 1 -0.3633 0.5839 0.8456 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6372 1.5805 2.0801 35 1 -0.4111 7.1117 0.3879 36 1 3.4983 1.8831 -2.2292 37 1 5.9490 1.8873 -2.4576 38 1 7.8764 0.3437 1.2301 39 1 7.8749 2.5593 2.1866 40 1 8.9201 3.2110 0.8813 41 1 9.6836 1.3012 3.1585 42 1 10.5222 2.7944 2.6357 43 1 11.5389 1.7366 0.8207 44 1 11.2769 0.2649 1.7980 45 1 10.0694 0.9582 -0.7472 46 1 9.8074 -0.5141 0.2293 47 1 6.3312 0.9999 1.7055 48 1 3.8797 1.0059 1.9274 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:29 Heat of formation + Delta-G solvation = -126.578278 kcal Electronic energy + Delta-G solvation = -29726.103053 eV Core-core repulsion = 25678.626922 eV Total energy + Delta-G solvation = -4047.476131 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.30049 -38.61265 -36.83758 -35.33532 -35.06560 -33.86672 -33.06649 -31.18139 -30.73552 -29.89617 -28.98240 -27.99087 -26.10191 -25.13467 -22.87870 -22.07578 -20.90470 -20.45678 -20.15404 -18.97546 -18.34685 -17.43358 -16.38700 -16.05524 -15.84513 -15.64883 -15.14619 -15.02051 -14.84659 -14.25915 -14.20074 -13.90191 -13.74218 -13.60993 -13.26681 -13.18490 -12.87363 -12.63439 -12.47172 -12.15463 -11.99443 -11.74324 -11.53143 -11.39930 -11.24672 -11.20154 -11.19047 -11.09804 -11.05601 -10.81050 -10.70885 -10.60493 -10.47104 -10.39202 -10.21373 -10.12945 -10.06348 -9.21433 -9.02329 -8.70727 -8.52841 -7.78949 -6.66914 -5.28850 1.63104 1.69416 2.40780 3.09327 3.14239 3.19491 3.21716 3.99321 4.08860 4.25852 4.32185 4.59805 4.67420 4.81525 4.87910 5.00674 5.05088 5.12725 5.16210 5.16945 5.26014 5.30615 5.33784 5.39965 5.56044 5.60571 5.62197 5.64792 5.70040 5.75728 5.85332 5.87334 5.92809 5.97509 6.00683 6.03839 6.08136 6.17389 6.28185 6.32619 6.52098 6.55700 6.59692 6.65362 6.78235 7.03058 7.08966 7.35643 7.60489 7.94296 8.00125 8.91872 10.27075 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.016033 B = 0.002725 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.012092 B =10273.411501 C =10855.999190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C 0.203 3.797 4 H 0.097 0.903 5 N -1.128 6.128 6 S 2.712 3.288 7 O -1.013 7.013 8 O -0.996 6.996 9 C -1.021 5.021 10 H 0.102 0.898 11 C 0.134 3.866 12 N -0.845 5.845 13 Si 0.917 3.083 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.264 1.264 17 C -0.117 4.117 18 C -0.065 4.065 19 C -0.152 4.152 20 C 0.121 3.879 21 O -0.310 6.310 22 C 0.078 3.922 23 C -0.149 4.149 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.120 4.120 27 C -0.211 4.211 28 C -0.063 4.063 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.400 0.600 35 H 0.290 0.710 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.124 0.876 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.162 -14.076 -1.478 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C 0.094 3.906 4 H 0.115 0.885 5 N -0.880 5.880 6 S 2.812 3.188 7 O -1.004 7.004 8 O -0.986 6.986 9 C -1.154 5.154 10 H 0.121 0.879 11 C -0.084 4.084 12 N -0.474 5.474 13 Si 0.741 3.259 14 H -0.189 1.189 15 H -0.202 1.202 16 H -0.189 1.189 17 C -0.119 4.119 18 C -0.084 4.084 19 C -0.170 4.170 20 C 0.076 3.924 21 O -0.224 6.224 22 C 0.022 3.978 23 C -0.187 4.187 24 C -0.162 4.162 25 C -0.159 4.159 26 C -0.157 4.157 27 C -0.230 4.230 28 C -0.082 4.082 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.230 0.770 35 H 0.101 0.899 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.141 0.859 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.825 -13.056 -1.325 19.799 hybrid contribution -1.333 -0.193 -0.256 1.371 sum 13.492 -13.249 -1.580 18.975 Atomic orbital electron populations 1.21813 0.95188 1.01099 1.03199 1.21783 0.96492 0.95349 1.02230 1.19458 0.89200 0.94240 0.87680 0.88472 1.56143 1.86303 1.31802 1.13774 1.00524 0.75383 0.69074 0.73864 1.93370 1.85796 1.81458 1.39750 1.93382 1.59136 1.71117 1.74963 1.30557 1.32914 0.99740 1.52174 0.87927 1.24725 0.97329 0.94004 0.92360 1.69901 1.38555 1.00063 1.38898 0.86250 0.81291 0.77862 0.80450 1.18903 1.20204 1.18851 1.20289 0.96533 1.01549 0.93503 1.20827 0.93603 0.96556 0.97406 1.20323 0.92763 1.06594 0.97349 1.18928 0.82108 0.97221 0.94102 1.86078 1.15148 1.84036 1.37163 1.23386 0.91749 0.96647 0.86036 1.23109 0.98393 0.98366 0.98831 1.22279 0.96088 0.99985 0.97807 1.22088 0.97744 0.99726 0.96366 1.22155 0.92536 1.00674 1.00378 1.21157 0.95993 1.09227 0.96586 1.20686 0.92309 0.96787 0.98381 0.92384 0.93213 0.91525 0.91235 0.91747 0.76961 0.89917 0.85222 0.85567 0.90311 0.90689 0.90106 0.91368 0.91115 0.91365 0.91470 0.90277 0.91009 0.85870 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.86 37.16 0.37 -1.68 16 2 C -0.12 -1.55 5.50 -26.73 -0.15 -1.69 16 3 C 0.20 3.38 2.36 -69.08 -0.16 3.22 16 4 H 0.10 1.73 7.69 -51.93 -0.40 1.33 16 5 N -1.13 -21.52 4.16 -5.88 -0.02 -21.55 16 6 S 2.71 70.90 4.96 -107.50 -0.53 70.37 16 7 O -1.01 -29.63 18.02 -57.17 -1.03 -30.66 16 8 O -1.00 -28.99 17.69 -57.17 -1.01 -30.00 16 9 C -1.02 -27.40 9.55 30.60 0.29 -27.11 16 10 H 0.10 2.47 7.81 -52.49 -0.41 2.06 16 11 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 12 N -0.84 -24.87 13.11 55.43 0.73 -24.14 16 13 Si 0.92 20.40 29.54 -169.99 -5.02 15.38 16 14 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 17 C -0.12 -1.93 4.96 -104.60 -0.52 -2.45 16 18 C -0.07 -1.03 9.66 -39.60 -0.38 -1.41 16 19 C -0.15 -2.30 9.99 -39.43 -0.39 -2.69 16 20 C 0.12 1.82 6.66 -39.22 -0.26 1.56 16 21 O -0.31 -4.26 9.86 -19.45 -0.19 -4.45 16 22 C 0.08 0.84 2.69 -24.89 -0.07 0.77 16 23 C -0.15 -1.54 6.42 -24.56 -0.16 -1.69 16 24 C -0.12 -0.97 6.82 -25.07 -0.17 -1.14 16 25 C -0.12 -0.86 6.80 -25.61 -0.17 -1.04 16 26 C -0.12 -1.01 6.56 -25.61 -0.17 -1.18 16 27 C -0.21 -3.08 8.86 -39.43 -0.35 -3.43 16 28 C -0.06 -0.99 9.32 -39.61 -0.37 -1.36 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.97 7.65 -51.93 -0.40 0.57 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.40 6.52 8.65 -34.47 -0.30 6.22 16 35 H 0.29 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.13 1.81 8.03 -52.49 -0.42 1.39 16 37 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 38 H 0.08 0.79 6.23 -51.92 -0.32 0.47 16 39 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.70 8.07 -51.93 -0.42 0.29 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.12 1.51 5.52 -52.49 -0.29 1.22 16 48 H 0.12 1.71 7.57 -52.49 -0.40 1.31 16 LS Contribution 402.82 15.07 6.07 6.07 Total: -1.00 -35.60 402.82 -11.32 -46.92 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -7.54 Total: 9.79 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: -2.76 Total: -37.73 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.70 Total: -45.69 kcal Atomic # 8 Polarization: -62.87 SS G_CDS: -2.23 Total: -65.10 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 70.90 SS G_CDS: -0.53 Total: 70.37 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.60 -11.32 -46.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.661 kcal (2) G-P(sol) polarization free energy of solvation -35.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds