Wall clock time and date at job start Tue Mar 31 2020 06:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38288 * 119.96829 * 2 1 4 4 C 1.38244 * 120.11090 * 179.97438 * 3 2 1 5 5 C 1.38169 * 120.05650 * 359.76546 * 4 3 2 6 6 C 1.50697 * 120.02880 * 180.25496 * 5 4 3 7 7 N 1.46501 * 109.47074 * 260.23215 * 6 5 4 8 8 S 1.65598 * 120.00041 * 165.00240 * 7 6 5 9 9 O 1.42098 * 106.40404 * 178.54031 * 8 7 6 10 10 O 1.42104 * 106.40304 * 311.45935 * 8 7 6 11 11 C 1.76205 * 107.21974 * 64.99742 * 8 7 6 12 12 H 1.07997 * 120.00003 * 0.02562 * 11 8 7 13 13 C 1.37878 * 120.00010 * 180.02562 * 11 8 7 14 14 N 1.31513 * 120.00048 * 359.97438 * 13 11 8 15 15 Si 1.86794 * 119.99846 * 180.02562 * 13 11 8 16 16 H 1.48505 * 109.47304 * 90.00219 * 15 13 11 17 17 H 1.48500 * 109.47366 * 210.00088 * 15 13 11 18 18 H 1.48494 * 109.47292 * 330.00157 * 15 13 11 19 19 C 1.38708 * 119.94158 * 0.48454 * 5 4 3 20 20 O 1.35898 * 120.05686 * 179.76214 * 19 5 4 21 21 C 1.42896 * 117.00338 * 185.14881 * 20 19 5 22 22 C 1.53001 * 109.47453 * 155.10676 * 21 20 19 23 23 C 1.53000 * 109.47491 * 180.02562 * 22 21 20 24 24 C 1.52998 * 109.47062 * 300.00063 * 23 22 21 25 25 C 1.53000 * 109.47354 * 59.99822 * 24 23 22 26 26 C 1.52998 * 109.47474 * 275.10968 * 21 20 19 27 27 C 1.38119 * 119.97755 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.46722 * 270.01866 * 1 2 3 29 29 H 1.08993 * 109.47498 * 30.02378 * 1 2 3 30 30 H 1.09004 * 109.46916 * 150.02653 * 1 2 3 31 31 H 1.08002 * 119.94646 * 0.02562 * 3 2 1 32 32 H 1.07998 * 119.97324 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.47617 * 20.23601 * 6 5 4 34 34 H 1.09003 * 109.47380 * 140.23405 * 6 5 4 35 35 H 0.96999 * 120.00256 * 344.99983 * 7 6 5 36 36 H 0.96997 * 119.99991 * 179.97438 * 14 13 11 37 37 H 1.09007 * 109.47154 * 35.10978 * 21 20 19 38 38 H 1.08995 * 109.47129 * 60.00055 * 22 21 20 39 39 H 1.09010 * 109.46926 * 300.00504 * 22 21 20 40 40 H 1.08996 * 109.46816 * 59.99919 * 23 22 21 41 41 H 1.08997 * 109.47315 * 180.02562 * 23 22 21 42 42 H 1.08995 * 109.47069 * 180.02562 * 24 23 22 43 43 H 1.09007 * 109.46939 * 300.00348 * 24 23 22 44 44 H 1.09001 * 109.47458 * 180.02562 * 25 24 23 45 45 H 1.08996 * 109.47131 * 59.99772 * 25 24 23 46 46 H 1.08996 * 109.47187 * 299.99422 * 26 21 20 47 47 H 1.08996 * 109.47574 * 59.99849 * 26 21 20 48 48 H 1.08005 * 120.02877 * 0.02715 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2014 0.0005 5 6 4.2752 0.0073 0.0060 6 6 5.7822 0.0118 0.0124 7 7 6.2770 -0.2239 -1.3463 8 16 7.8596 0.0916 -1.7175 9 8 8.0312 -0.2675 -3.0816 10 8 8.1382 1.3914 -1.2150 11 6 8.8481 -1.0263 -0.7805 12 1 8.3778 -1.7397 -0.1200 13 6 10.2220 -0.9904 -0.8905 14 7 10.7947 -0.1220 -1.6951 15 14 11.2698 -2.1760 0.1023 16 1 11.4881 -3.4188 -0.6808 17 1 12.5796 -1.5451 0.4048 18 1 10.5747 -2.5068 1.3721 19 6 3.5847 -1.1957 0.0007 20 8 4.2659 -2.3716 0.0012 21 6 3.4944 -3.5684 -0.1187 22 6 4.3648 -4.6794 -0.7095 23 6 3.5386 -5.9606 -0.8384 24 6 3.0377 -6.3856 0.5434 25 6 2.1673 -5.2747 1.1343 26 6 2.9940 -3.9932 1.2633 27 6 2.1971 -1.1964 0.0005 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8903 -0.5134 31 1 1.6564 2.1325 0.0004 32 1 4.1174 2.1383 0.0010 33 1 6.1412 0.9778 0.3673 34 1 6.1451 -0.7757 0.6729 35 1 5.6775 -0.5649 -2.0284 36 1 11.7613 -0.0964 -1.7722 37 1 2.6422 -3.3873 -0.7738 38 1 5.2169 -4.8605 -0.0545 39 1 4.7214 -4.3767 -1.6942 40 1 2.6867 -5.7792 -1.4937 41 1 4.1588 -6.7522 -1.2589 42 1 2.4495 -7.2986 0.4516 43 1 3.8897 -6.5670 1.1987 44 1 1.8108 -5.5773 2.1189 45 1 1.3154 -5.0933 0.4790 46 1 3.8460 -4.1744 1.9184 47 1 2.3738 -3.2018 1.6843 48 1 1.6572 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439799.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:00 Heat of formation + Delta-G solvation = -134.707307 kcal Electronic energy + Delta-G solvation = -30080.690848 eV Core-core repulsion = 26032.862216 eV Total energy + Delta-G solvation = -4047.828632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.149 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.61049 -38.67540 -36.72924 -35.24925 -34.83880 -33.84645 -33.00926 -31.96911 -31.11280 -30.45560 -29.49291 -27.69019 -26.04109 -23.99683 -23.49942 -22.91281 -21.62267 -20.95760 -19.90627 -18.90553 -17.66463 -17.30844 -16.50731 -16.14196 -15.72306 -15.56165 -15.08188 -14.72063 -14.63346 -14.50127 -14.35143 -14.03621 -13.95067 -13.71690 -13.31396 -13.20594 -13.06792 -12.90828 -12.55297 -12.43904 -12.20690 -12.06676 -11.88682 -11.62770 -11.41831 -11.35519 -11.17464 -11.14720 -11.10158 -11.00623 -10.64927 -10.55979 -10.54555 -10.23811 -10.19283 -10.15499 -10.09109 -9.17556 -8.90820 -8.69888 -8.34442 -8.01253 -6.62254 -5.22664 1.29608 1.49943 2.49595 3.11532 3.17961 3.18269 3.25337 3.76089 4.14248 4.43602 4.45936 4.64553 4.69959 4.72385 4.80948 4.88618 4.92322 4.97125 4.99422 5.08137 5.17956 5.20892 5.23991 5.31075 5.35533 5.42052 5.50922 5.54794 5.65572 5.69008 5.75903 5.80502 5.85799 5.86589 5.93273 5.96729 6.00072 6.03593 6.10883 6.19049 6.30061 6.35840 6.53547 6.58783 6.72376 6.88920 6.96949 7.40699 7.53994 8.03027 8.10362 8.97478 10.31852 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.009091 B = 0.003892 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3079.166344 B = 7193.009788 C = 9511.085546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.052 4.052 3 C -0.163 4.163 4 C -0.062 4.062 5 C -0.126 4.126 6 C 0.177 3.823 7 N -1.129 6.129 8 S 2.717 3.283 9 O -1.009 7.009 10 O -1.009 7.009 11 C -1.018 5.018 12 H 0.103 0.897 13 C 0.133 3.867 14 N -0.847 5.847 15 Si 0.919 3.081 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.263 1.263 19 C 0.150 3.850 20 O -0.295 6.295 21 C 0.087 3.913 22 C -0.119 4.119 23 C -0.115 4.115 24 C -0.124 4.124 25 C -0.115 4.115 26 C -0.146 4.146 27 C -0.216 4.216 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.121 0.879 32 H 0.133 0.867 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.401 0.599 36 H 0.290 0.710 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.122 -8.241 6.367 23.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.052 4.052 3 C -0.181 4.181 4 C -0.081 4.081 5 C -0.128 4.128 6 C 0.051 3.949 7 N -0.883 5.883 8 S 2.816 3.184 9 O -0.999 6.999 10 O -0.999 6.999 11 C -1.151 5.151 12 H 0.121 0.879 13 C -0.084 4.084 14 N -0.477 5.477 15 Si 0.743 3.257 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.187 1.187 19 C 0.104 3.896 20 O -0.208 6.208 21 C 0.030 3.970 22 C -0.156 4.156 23 C -0.152 4.152 24 C -0.161 4.161 25 C -0.153 4.153 26 C -0.184 4.184 27 C -0.235 4.235 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.151 0.849 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.231 0.769 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.330 -7.442 5.840 22.424 hybrid contribution 0.170 -1.306 0.658 1.472 sum -20.160 -8.748 6.498 22.917 Atomic orbital electron populations 1.20787 0.91347 1.02646 1.02204 1.19657 0.95699 0.92618 0.97229 1.20892 0.94042 0.97361 1.05800 1.21021 0.93864 0.97251 0.95953 1.19453 0.96273 0.90475 1.06637 1.19763 0.88399 1.01929 0.84827 1.55921 1.30891 1.84679 1.16813 1.00316 0.70021 0.74478 0.73536 1.93366 1.84521 1.85392 1.36635 1.93348 1.83170 1.41516 1.81860 1.30580 1.03791 1.37528 1.43229 0.87877 1.24734 0.97349 0.93881 0.92473 1.69903 1.13502 1.31973 1.32339 0.86196 0.78714 0.80386 0.80436 1.19279 1.20054 1.18664 1.18840 0.90094 0.85864 0.94821 1.86244 1.35511 1.11875 1.87188 1.22449 0.94378 0.83468 0.96671 1.21602 0.98658 0.92973 1.02416 1.21494 0.99727 0.96825 0.97177 1.21600 0.99784 0.97921 0.96825 1.21489 0.98046 0.94583 1.01136 1.22143 1.00831 0.97992 0.97416 1.21083 0.92853 0.98694 1.10864 0.91187 0.91433 0.91789 0.86063 0.84904 0.90170 0.91218 0.76865 0.90010 0.91128 0.90397 0.90463 0.91871 0.91055 0.91855 0.91595 0.91580 0.91987 0.90602 0.91298 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.05 -0.58 5.88 -104.65 -0.62 -1.19 16 3 C -0.16 -1.92 9.70 -39.56 -0.38 -2.30 16 4 C -0.06 -0.86 9.67 -39.60 -0.38 -1.24 16 5 C -0.13 -1.98 5.29 -104.48 -0.55 -2.53 16 6 C 0.18 3.29 6.01 -5.19 -0.03 3.26 16 7 N -1.13 -23.82 5.99 -11.66 -0.07 -23.89 16 8 S 2.72 74.06 5.02 -107.50 -0.54 73.52 16 9 O -1.01 -30.38 18.02 -57.17 -1.03 -31.41 16 10 O -1.01 -29.98 17.49 -57.17 -1.00 -30.98 16 11 C -1.02 -28.67 9.72 30.60 0.30 -28.37 16 12 H 0.10 2.68 7.81 -52.49 -0.41 2.27 16 13 C 0.13 3.79 5.46 -17.82 -0.10 3.69 16 14 N -0.85 -25.40 13.19 55.43 0.73 -24.67 16 15 Si 0.92 21.01 29.54 -169.99 -5.02 15.99 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 19 C 0.15 2.18 6.57 -39.22 -0.26 1.92 16 20 O -0.30 -4.38 9.03 -19.42 -0.18 -4.55 16 21 C 0.09 0.98 2.11 -26.73 -0.06 0.93 16 22 C -0.12 -1.31 5.57 -26.73 -0.15 -1.46 16 23 C -0.11 -0.96 5.92 -26.73 -0.16 -1.12 16 24 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 25 C -0.11 -0.87 5.93 -26.70 -0.16 -1.02 16 26 C -0.15 -1.41 5.18 -26.71 -0.14 -1.55 16 27 C -0.22 -2.61 7.89 -39.43 -0.31 -2.92 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.13 1.69 8.04 -52.49 -0.42 1.27 16 33 H 0.08 1.49 7.62 -51.93 -0.40 1.10 16 34 H 0.07 1.29 7.85 -51.93 -0.41 0.89 16 35 H 0.40 7.73 8.64 -34.46 -0.30 7.43 16 36 H 0.29 7.80 8.31 -40.82 -0.34 7.46 16 37 H 0.07 0.74 6.31 -51.93 -0.33 0.41 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 0.67 6.91 -51.93 -0.36 0.31 16 48 H 0.13 1.29 5.43 -52.48 -0.28 1.00 16 LS Contribution 399.01 15.07 6.01 6.01 Total: -1.00 -35.93 399.01 -11.41 -47.34 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -7.53 Total: 8.19 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: -2.79 Total: -35.53 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.66 Total: -48.56 kcal Atomic # 8 Polarization: -64.75 SS G_CDS: -2.21 Total: -66.95 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 74.06 SS G_CDS: -0.54 Total: 73.52 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.93 -11.41 -47.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439799.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.363 kcal (2) G-P(sol) polarization free energy of solvation -35.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds