Wall clock time and date at job start Tue Mar 31 2020 04:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99914 * 2 1 4 4 H 1.48496 * 109.47243 * 239.99937 * 3 2 1 5 5 H 1.48502 * 109.46645 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47126 * 119.99806 * 3 2 1 7 7 C 1.37873 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00093 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.47411 * 180.02562 * 9 7 2 11 11 C 1.76198 * 103.00125 * 179.97438 * 10 9 7 12 12 C 1.38782 * 120.10682 * 359.95629 * 11 10 9 13 13 C 1.38191 * 119.99201 * 180.02562 * 12 11 10 14 14 C 1.38304 * 120.20073 * 359.97438 * 13 12 11 15 15 C 1.38254 * 120.20737 * 0.02728 * 14 13 12 16 16 C 1.38648 * 120.00935 * 359.97261 * 15 14 13 17 17 N 1.40134 * 120.10201 * 180.02562 * 16 15 14 18 18 C 1.34777 * 120.00068 * 24.81560 * 17 16 15 19 19 O 1.21297 * 119.99760 * 5.53391 * 18 17 16 20 20 C 1.50694 * 120.00342 * 185.53129 * 18 17 16 21 21 N 1.46501 * 109.47464 * 180.02562 * 20 18 17 22 22 C 1.44538 * 120.61469 * 89.99927 * 21 20 18 23 23 C 1.53432 * 111.71717 * 179.97438 * 22 21 20 24 24 S 1.82071 * 103.93406 * 359.97438 * 23 22 21 25 25 C 1.33007 * 120.61346 * 269.71990 * 21 20 18 26 26 O 1.21619 * 125.20013 * 359.97438 * 25 21 20 27 27 H 0.96998 * 119.99750 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47597 * 60.00006 * 9 7 2 29 29 H 1.09002 * 109.47181 * 299.99979 * 9 7 2 30 30 H 1.08006 * 120.00413 * 359.97438 * 12 11 10 31 31 H 1.08001 * 119.90603 * 180.27597 * 13 12 11 32 32 H 1.07995 * 119.89742 * 180.02562 * 14 13 12 33 33 H 1.08003 * 119.99544 * 180.02562 * 15 14 13 34 34 H 0.97000 * 120.00215 * 204.82117 * 17 16 15 35 35 H 1.09003 * 109.47333 * 300.00350 * 20 18 17 36 36 H 1.09001 * 109.47396 * 60.00192 * 20 18 17 37 37 H 1.09003 * 109.03813 * 300.56941 * 22 21 20 38 38 H 1.08996 * 109.04428 * 59.38467 * 22 21 20 39 39 H 1.09002 * 110.53236 * 118.61255 * 23 22 21 40 40 H 1.09001 * 110.53513 * 241.24237 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 16 2.4300 -3.8778 0.0021 11 6 1.3827 -5.2948 0.0027 12 6 0.0034 -5.1410 0.0029 13 6 -0.8157 -6.2539 0.0039 14 6 -0.2655 -7.5228 0.0041 15 6 1.1075 -7.6856 0.0040 16 6 1.9374 -6.5750 0.0030 17 7 3.3293 -6.7378 0.0022 18 6 3.8753 -7.8685 -0.4874 19 8 3.1713 -8.7014 -1.0184 20 6 5.3604 -8.0981 -0.3753 21 7 5.7020 -9.3889 -0.9782 22 6 6.0429 -9.4793 -2.3799 23 6 6.3646 -10.9212 -2.7941 24 16 6.1564 -11.8756 -1.2576 25 6 5.7096 -10.4983 -0.2447 26 8 5.4481 -10.5562 0.9417 27 1 -0.4850 0.8400 0.0004 28 1 0.6249 -2.5571 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 -0.4297 -4.1516 0.0031 31 1 -1.8889 -6.1327 -0.0005 32 1 -0.9102 -8.3892 0.0045 33 1 1.5335 -8.6780 0.0037 34 1 3.8998 -6.0367 0.3542 35 1 5.8916 -7.3019 -0.8968 36 1 5.6495 -8.0999 0.6757 37 1 5.2036 -9.1175 -2.9740 38 1 6.9116 -8.8509 -2.5760 39 1 5.6652 -11.2652 -3.5561 40 1 7.3900 -10.9952 -3.1563 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953572.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:25 Heat of formation + Delta-G solvation = -30.834278 kcal Electronic energy + Delta-G solvation = -25278.505522 eV Core-core repulsion = 21503.986507 eV Total energy + Delta-G solvation = -3774.519015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 352.070 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.03241 -39.84048 -38.12505 -36.98669 -34.79462 -33.32797 -32.22087 -30.81154 -29.91958 -28.67214 -28.03751 -25.23817 -23.67235 -22.89186 -22.58970 -21.34111 -20.29902 -18.62742 -18.23618 -17.66639 -17.21717 -16.55828 -16.38774 -16.24128 -15.58321 -15.09901 -15.00698 -14.69763 -14.56270 -14.42969 -14.32220 -13.96596 -13.50533 -13.41658 -13.14256 -13.05054 -12.72264 -12.52079 -12.43679 -12.23361 -11.83250 -11.37065 -11.32438 -10.98439 -10.85069 -10.53046 -10.30251 -10.23734 -10.04228 -9.78368 -9.44722 -9.28751 -9.24199 -8.70251 -8.62700 -8.07974 -6.67650 -6.33795 -4.40274 0.71952 1.39039 1.40300 1.63014 1.83867 2.28285 2.45119 2.49077 3.05300 3.18481 3.22946 3.25424 3.51579 3.70470 4.03377 4.16232 4.22843 4.40255 4.52220 4.79616 4.83700 4.87290 5.03744 5.04606 5.21191 5.28639 5.42217 5.53190 5.71563 5.76091 6.13523 6.36765 6.38233 6.49068 6.63777 6.80771 6.87122 6.90434 7.16908 7.22237 7.33437 7.57852 7.81053 7.92684 8.60216 9.24121 10.77221 Molecular weight = 352.07amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.002328 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.534494 B =12022.553468 C =13254.739216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.068 0.932 9 C 0.079 3.921 10 S -0.172 6.172 11 C -0.094 4.094 12 C -0.115 4.115 13 C -0.116 4.116 14 C -0.121 4.121 15 C -0.116 4.116 16 C 0.148 3.852 17 N -0.655 5.655 18 C 0.496 3.504 19 O -0.513 6.513 20 C 0.100 3.900 21 N -0.593 5.593 22 C 0.099 3.901 23 C -0.098 4.098 24 S -0.171 6.171 25 C 0.550 3.450 26 O -0.481 6.481 27 H 0.268 0.732 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.142 0.858 34 H 0.415 0.585 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.164 -18.218 -5.359 22.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.086 0.914 9 C -0.067 4.067 10 S 0.074 5.926 11 C -0.210 4.210 12 C -0.139 4.139 13 C -0.137 4.137 14 C -0.143 4.143 15 C -0.137 4.137 16 C 0.048 3.952 17 N -0.300 5.300 18 C 0.281 3.719 19 O -0.388 6.388 20 C -0.030 4.030 21 N -0.329 5.329 22 C -0.025 4.025 23 C -0.247 4.247 24 S 0.054 5.946 25 C 0.229 3.771 26 O -0.357 6.357 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.154 0.846 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.159 0.841 34 H 0.253 0.747 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.137 0.863 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.824 -19.779 -4.855 23.549 hybrid contribution -1.023 2.499 -0.153 2.705 sum 10.801 -17.280 -5.008 20.984 Atomic orbital electron populations 1.69929 1.06155 1.27779 1.48664 1.24951 0.95007 0.99331 0.94309 0.86376 0.79420 0.81673 0.78999 1.19842 1.20929 1.19806 1.20555 0.93398 0.88511 1.53634 0.91403 1.21363 0.94068 0.90361 1.00949 1.84941 1.18549 0.98319 1.90794 1.21797 0.97486 0.95955 1.05737 1.21235 0.91549 1.00074 1.01074 1.21050 0.99576 0.92254 1.00778 1.20956 0.94374 0.97094 1.01898 1.21198 0.93129 0.98272 1.01130 1.17180 0.82041 0.92256 1.03727 1.43437 1.06051 1.19793 1.60711 1.21088 0.90935 0.81698 0.78160 1.90688 1.62447 1.43941 1.41763 1.21410 0.92740 0.86024 1.02810 1.47411 1.68112 1.07319 1.10054 1.21425 1.03354 0.96703 0.81024 1.24192 1.07841 0.94520 0.98152 1.87478 1.85447 1.14614 1.07014 1.21688 0.79515 0.86165 0.89745 1.90893 1.50779 1.81020 1.13022 0.92184 0.93694 0.93694 0.84645 0.86041 0.86108 0.84079 0.74750 0.85962 0.85769 0.88671 0.88816 0.86302 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.60 13.29 55.43 0.74 -23.86 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 3 Si 0.91 20.27 29.54 -169.99 -5.02 15.25 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.52 -13.74 9.13 -34.44 -0.31 -14.06 16 8 H 0.07 1.75 7.71 -52.48 -0.40 1.35 16 9 C 0.08 1.92 4.09 36.00 0.15 2.07 16 10 S -0.17 -3.41 20.55 -107.50 -2.21 -5.62 16 11 C -0.09 -1.74 6.12 -38.90 -0.24 -1.98 16 12 C -0.11 -2.07 9.36 -39.40 -0.37 -2.44 16 13 C -0.12 -1.80 10.04 -39.57 -0.40 -2.20 16 14 C -0.12 -1.81 10.04 -39.55 -0.40 -2.21 16 15 C -0.12 -1.89 8.72 -39.42 -0.34 -2.23 16 16 C 0.15 2.48 6.44 -83.43 -0.54 1.95 16 17 N -0.65 -8.99 5.17 -9.71 -0.05 -9.04 16 18 C 0.50 6.33 7.71 -10.99 -0.08 6.25 16 19 O -0.51 -8.12 13.60 5.54 0.08 -8.04 16 20 C 0.10 0.87 6.05 -5.20 -0.03 0.83 16 21 N -0.59 -5.49 2.27 -180.65 -0.41 -5.90 16 22 C 0.10 0.56 6.80 -4.87 -0.03 0.53 16 23 C -0.10 -0.47 7.42 37.38 0.28 -0.19 16 24 S -0.17 -1.63 23.25 -107.50 -2.50 -4.13 16 25 C 0.55 6.71 8.27 53.27 0.44 7.15 16 26 O -0.48 -7.60 17.27 5.26 0.09 -7.51 16 27 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.04 1.14 7.75 -51.92 -0.40 0.74 16 29 H 0.04 1.14 7.75 -51.92 -0.40 0.74 16 30 H 0.14 2.59 5.88 -52.48 -0.31 2.28 16 31 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.14 2.36 5.79 -52.48 -0.30 2.05 16 34 H 0.42 5.01 7.65 -40.82 -0.31 4.70 16 35 H 0.12 0.60 8.08 -51.93 -0.42 0.18 16 36 H 0.12 1.02 7.65 -51.93 -0.40 0.62 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -33.37 367.14 -10.35 -43.73 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.62 Total: 4.39 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -1.98 Total: -4.79 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.28 Total: -38.80 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.17 Total: -15.55 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: -5.04 SS G_CDS: -4.71 Total: -9.75 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.37 -10.35 -43.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953572.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.893 kcal (2) G-P(sol) polarization free energy of solvation -33.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds