Wall clock time and date at job start Tue Mar 31 2020 04:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00395 * 2 1 4 4 H 1.48494 * 109.47222 * 270.01050 * 3 2 1 5 5 H 1.48504 * 109.46587 * 30.00546 * 3 2 1 6 6 H 1.48496 * 109.46974 * 150.00268 * 3 2 1 7 7 C 1.37884 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00096 * 359.97438 * 7 2 1 10 10 S 1.81395 * 109.47373 * 180.02562 * 9 7 2 11 11 C 1.76200 * 103.00445 * 179.97438 * 10 9 7 12 12 C 1.38791 * 120.10059 * 0.27619 * 11 10 9 13 13 C 1.38202 * 119.98526 * 180.27543 * 12 11 10 14 14 C 1.38294 * 120.19890 * 359.72289 * 13 12 11 15 15 C 1.38254 * 120.21250 * 359.97438 * 14 13 12 16 16 C 1.38648 * 120.00755 * 0.02562 * 15 14 13 17 17 N 1.40139 * 120.09807 * 180.02562 * 16 15 14 18 18 C 1.34780 * 120.00266 * 34.66556 * 17 16 15 19 19 O 1.21295 * 119.99774 * 355.53028 * 18 17 16 20 20 C 1.50697 * 119.99753 * 175.24755 * 18 17 16 21 21 N 1.46500 * 109.46935 * 180.27627 * 20 18 17 22 22 C 1.47018 * 121.01426 * 90.00333 * 21 20 18 23 23 S 1.83708 * 103.10798 * 196.71415 * 22 21 20 24 24 C 1.83781 * 94.16140 * 338.08248 * 23 22 21 25 25 C 1.32763 * 121.02091 * 269.72336 * 21 20 18 26 26 O 1.21281 * 121.80580 * 359.65865 * 25 21 20 27 27 H 0.97003 * 119.99657 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47566 * 59.99593 * 9 7 2 29 29 H 1.09001 * 109.47027 * 299.99954 * 9 7 2 30 30 H 1.07997 * 120.00672 * 359.97288 * 12 11 10 31 31 H 1.08000 * 119.90016 * 179.74665 * 13 12 11 32 32 H 1.07999 * 119.89732 * 180.02562 * 14 13 12 33 33 H 1.08000 * 119.99452 * 180.02562 * 15 14 13 34 34 H 0.97008 * 119.99989 * 214.67015 * 17 16 15 35 35 H 1.08998 * 109.47685 * 300.27975 * 20 18 17 36 36 H 1.09006 * 109.47264 * 60.28287 * 20 18 17 37 37 H 1.09008 * 110.69033 * 315.11741 * 22 21 20 38 38 H 1.09002 * 110.69410 * 78.30822 * 22 21 20 39 39 H 1.09001 * 110.85553 * 139.67200 * 24 23 22 40 40 H 1.08998 * 110.85263 * 263.10289 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 16 2.4297 -3.8780 -0.0005 11 6 1.3823 -5.2949 0.0002 12 6 0.0030 -5.1409 -0.0051 13 6 -0.8163 -6.2539 0.0012 14 6 -0.2660 -7.5227 0.0072 15 6 1.1069 -7.6856 0.0062 16 6 1.9369 -6.5751 -0.0001 17 7 3.3288 -6.7380 -0.0016 18 6 3.8855 -7.7729 -0.6617 19 8 3.1793 -8.6081 -1.1860 20 6 5.3852 -7.8887 -0.7537 21 7 5.7363 -9.0859 -1.5216 22 6 5.9050 -9.0274 -2.9809 23 16 5.8142 -10.7925 -3.4819 24 6 6.2652 -11.4270 -1.8171 25 6 5.9172 -10.2557 -0.9203 26 8 5.8065 -10.3808 0.2809 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 -0.4300 -4.1516 -0.0093 31 1 -1.8894 -6.1325 0.0012 32 1 -0.9108 -8.3891 0.0117 33 1 1.5328 -8.6781 0.0105 34 1 3.8916 -6.1060 0.4725 35 1 5.7879 -7.0066 -1.2516 36 1 5.8060 -7.9638 0.2490 37 1 5.0984 -8.4550 -3.4392 38 1 6.8751 -8.6031 -3.2398 39 1 5.6706 -12.3042 -1.5619 40 1 7.3301 -11.6533 -1.7635 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:28 Heat of formation + Delta-G solvation = -26.794997 kcal Electronic energy + Delta-G solvation = -25328.353219 eV Core-core repulsion = 21554.009360 eV Total energy + Delta-G solvation = -3774.343859 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 352.070 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.04905 -39.95698 -38.15268 -36.18990 -34.73374 -33.32459 -31.63238 -30.81082 -29.74675 -28.66935 -28.34312 -26.47001 -23.62448 -22.80329 -22.39338 -20.79186 -20.01195 -18.31466 -18.01192 -17.59108 -17.11538 -16.59052 -16.33870 -16.27535 -15.58337 -15.34728 -15.05776 -14.61431 -14.49975 -14.34565 -14.05519 -13.88582 -13.47460 -13.20575 -13.14387 -13.02912 -12.86651 -12.49236 -12.43948 -12.20599 -11.80830 -11.38778 -11.30917 -11.00809 -10.82429 -10.47804 -10.39455 -10.25445 -10.00157 -9.76378 -9.38950 -9.27098 -9.21484 -8.70404 -8.33599 -8.12909 -6.68148 -6.33743 -4.39995 0.98143 1.28115 1.42881 1.63565 1.99393 2.15835 2.32531 2.46858 3.07186 3.17068 3.23610 3.26954 3.52776 3.62133 4.01623 4.23040 4.41170 4.54809 4.57546 4.63805 4.70009 4.85934 4.91790 5.03977 5.22170 5.28674 5.40274 5.53135 5.73685 5.77176 6.14338 6.42141 6.46256 6.48484 6.64965 6.80249 6.87456 6.90911 7.21139 7.31815 7.43329 7.58359 7.81434 7.98971 8.60829 9.24428 10.77357 Molecular weight = 352.07amu Principal moments of inertia in cm(-1) A = 0.014460 B = 0.002422 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.945906 B =11559.495256 C =12766.576555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.521 4.521 8 H 0.068 0.932 9 C 0.077 3.923 10 S -0.167 6.167 11 C -0.090 4.090 12 C -0.118 4.118 13 C -0.112 4.112 14 C -0.125 4.125 15 C -0.105 4.105 16 C 0.144 3.856 17 N -0.658 5.658 18 C 0.496 3.504 19 O -0.512 6.512 20 C 0.101 3.899 21 N -0.593 5.593 22 C 0.152 3.848 23 S -0.237 6.237 24 C -0.097 4.097 25 C 0.523 3.477 26 O -0.514 6.514 27 H 0.268 0.732 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.136 0.864 34 H 0.414 0.586 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.108 0.892 39 H 0.139 0.861 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.954 -18.382 -3.817 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.560 4.560 8 H 0.086 0.914 9 C -0.070 4.070 10 S 0.079 5.921 11 C -0.205 4.205 12 C -0.143 4.143 13 C -0.132 4.132 14 C -0.147 4.147 15 C -0.126 4.126 16 C 0.044 3.956 17 N -0.304 5.304 18 C 0.282 3.718 19 O -0.387 6.387 20 C -0.026 4.026 21 N -0.326 5.326 22 C -0.081 4.081 23 S -0.011 6.011 24 C -0.249 4.249 25 C 0.309 3.691 26 O -0.389 6.389 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.153 0.847 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.154 0.846 34 H 0.251 0.749 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.126 0.874 39 H 0.157 0.843 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.291 -19.300 -4.645 22.837 hybrid contribution -0.644 1.785 1.111 2.199 sum 10.647 -17.515 -3.535 20.799 Atomic orbital electron populations 1.69937 1.06165 1.27656 1.48763 1.24954 0.95002 0.99343 0.94324 0.86321 0.79719 0.82023 0.78440 1.20249 1.20849 1.19489 1.20592 0.93424 0.88501 1.53490 0.91360 1.21371 0.94171 0.90507 1.00933 1.85001 1.18368 0.98141 1.90595 1.21893 0.97462 0.96145 1.05011 1.21250 0.91594 1.00076 1.01349 1.21057 0.99582 0.92247 1.00362 1.20949 0.94390 0.97108 1.02241 1.21087 0.93094 0.98025 1.00442 1.17126 0.82126 0.92027 1.04343 1.43376 1.05996 1.29078 1.51940 1.21071 0.91089 0.81386 0.78279 1.90727 1.63001 1.39535 1.45430 1.21376 0.92537 0.88601 1.00112 1.47258 1.68908 1.09222 1.07256 1.24126 1.06375 0.96642 0.80994 1.88471 1.92561 1.03993 1.16113 1.24207 1.07612 1.00593 0.92458 1.20083 0.76568 0.83658 0.88818 1.90804 1.50656 1.83760 1.13670 0.92249 0.93717 0.93719 0.84656 0.86030 0.86118 0.84637 0.74910 0.85934 0.85838 0.86285 0.87410 0.84306 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 13.29 55.43 0.74 -23.88 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.91 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 7 C -0.52 -13.72 9.13 -34.44 -0.31 -14.04 16 8 H 0.07 1.77 7.71 -52.49 -0.40 1.37 16 9 C 0.08 1.86 4.09 36.00 0.15 2.01 16 10 S -0.17 -3.32 20.72 -107.50 -2.23 -5.55 16 11 C -0.09 -1.65 6.12 -38.90 -0.24 -1.89 16 12 C -0.12 -2.12 9.36 -39.39 -0.37 -2.49 16 13 C -0.11 -1.73 10.04 -39.57 -0.40 -2.12 16 14 C -0.13 -1.85 10.04 -39.56 -0.40 -2.25 16 15 C -0.10 -1.69 8.70 -39.42 -0.34 -2.04 16 16 C 0.14 2.39 6.32 -83.43 -0.53 1.86 16 17 N -0.66 -9.02 5.03 -9.71 -0.05 -9.07 16 18 C 0.50 6.44 7.75 -10.99 -0.09 6.35 16 19 O -0.51 -8.28 13.85 5.54 0.08 -8.20 16 20 C 0.10 0.89 6.04 -5.20 -0.03 0.86 16 21 N -0.59 -5.45 2.32 -177.89 -0.41 -5.87 16 22 C 0.15 1.08 7.84 60.13 0.47 1.55 16 23 S -0.24 -1.97 23.56 -107.50 -2.53 -4.50 16 24 C -0.10 -0.72 7.46 36.43 0.27 -0.45 16 25 C 0.52 5.56 7.67 -11.45 -0.09 5.48 16 26 O -0.51 -7.24 16.94 5.56 0.09 -7.15 16 27 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.04 1.14 7.74 -51.92 -0.40 0.74 16 29 H 0.04 1.13 7.76 -51.92 -0.40 0.73 16 30 H 0.14 2.59 5.88 -52.49 -0.31 2.28 16 31 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 32 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 33 H 0.14 2.23 6.20 -52.49 -0.33 1.90 16 34 H 0.41 4.94 7.96 -40.82 -0.32 4.61 16 35 H 0.12 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.12 1.00 7.53 -51.93 -0.39 0.61 16 37 H 0.12 0.90 8.14 -51.92 -0.42 0.47 16 38 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 368.43 15.07 5.55 5.55 Total: -1.00 -32.91 368.43 -10.43 -43.34 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.65 Total: 5.48 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.00 Total: -5.43 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.27 Total: -38.81 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.17 Total: -15.35 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -4.76 Total: -10.05 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.91 -10.43 -43.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.543 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds