Wall clock time and date at job start Tue Mar 31 2020 05:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48499 * 109.47153 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46790 * 299.99948 * 3 2 1 6 6 H 1.48493 * 109.47146 * 60.00137 * 3 2 1 7 7 C 1.37876 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00341 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99895 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46934 * 180.02562 * 9 7 2 11 11 C 1.35038 * 125.92944 * 125.00175 * 10 9 7 12 12 C 1.35084 * 107.97318 * 180.02562 * 11 10 9 13 13 C 1.50705 * 126.07115 * 179.97438 * 12 11 10 14 14 N 1.46500 * 109.47478 * 260.00028 * 13 12 11 15 15 C 1.39135 * 120.00383 * 180.02562 * 14 13 12 16 16 C 1.39105 * 119.67566 * 359.72617 * 15 14 13 17 17 C 1.38319 * 119.11911 * 179.79406 * 16 15 14 18 18 C 1.39039 * 118.48777 * 0.47468 * 17 16 15 19 19 F 1.35095 * 120.36117 * 179.77055 * 18 17 16 20 20 C 1.38222 * 119.27959 * 359.74480 * 18 17 16 21 21 N 1.31998 * 120.81965 * 0.02562 * 20 18 17 22 22 C 1.40840 * 107.85640 * 0.02562 * 12 11 10 23 23 C 1.48423 * 126.04050 * 180.02562 * 22 12 11 24 24 C 1.39320 * 120.11862 * 144.99964 * 23 22 12 25 25 C 1.38019 * 119.88091 * 179.97438 * 24 23 22 26 26 C 1.38325 * 120.11832 * 359.97438 * 25 24 23 27 27 C 1.38323 * 120.23744 * 0.02562 * 26 25 24 28 28 C 1.38017 * 120.12365 * 359.97438 * 27 26 25 29 29 N 1.31621 * 107.91980 * 0.26168 * 22 12 11 30 30 H 0.97003 * 119.99527 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47171 * 60.00254 * 9 7 2 32 32 H 1.08999 * 109.46795 * 299.99961 * 9 7 2 33 33 H 1.07997 * 126.01133 * 0.02562 * 11 10 9 34 34 H 1.09004 * 109.47373 * 20.00179 * 13 12 11 35 35 H 1.09001 * 109.47129 * 139.99612 * 13 12 11 36 36 H 0.97001 * 119.99469 * 359.97438 * 14 13 12 37 37 H 1.07998 * 120.44127 * 359.97438 * 16 15 14 38 38 H 1.08000 * 120.75600 * 180.19498 * 17 16 15 39 39 H 1.07994 * 119.59372 * 180.02562 * 20 18 17 40 40 H 1.08000 * 120.06310 * 359.95226 * 24 23 22 41 41 H 1.08006 * 119.94549 * 180.02562 * 25 24 23 42 42 H 1.07994 * 119.87991 * 179.72372 * 26 25 24 43 43 H 1.08001 * 119.93386 * 180.02562 * 27 26 25 44 44 H 1.07994 * 120.06263 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.2411 -4.6226 0.8952 12 6 3.2581 -5.4438 0.5544 13 6 3.6652 -6.7004 1.2799 14 7 4.8198 -6.4178 2.1361 15 6 5.3779 -7.4315 2.9086 16 6 4.8305 -8.7097 2.8672 17 6 5.3971 -9.7098 3.6365 18 6 6.4919 -9.3938 4.4334 19 9 7.0718 -10.3403 5.2034 20 6 6.9806 -8.1009 4.4287 21 7 6.4210 -7.1690 3.6799 22 6 3.8712 -4.9165 -0.5988 23 6 5.0319 -5.5011 -1.3156 24 6 5.1180 -5.4041 -2.7027 25 6 6.1998 -5.9490 -3.3643 26 6 7.1977 -6.5901 -2.6525 27 6 7.1171 -6.6893 -1.2752 28 6 6.0398 -6.1479 -0.6036 29 7 3.2361 -3.8109 -0.9254 30 1 -0.4849 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8897 33 1 1.5757 -4.7511 1.7360 34 1 2.8351 -7.0509 1.8934 35 1 3.9305 -7.4693 0.5542 36 1 5.1957 -5.5240 2.1639 37 1 3.9764 -8.9190 2.2404 38 1 4.9955 -10.7122 3.6221 39 1 7.8310 -7.8500 5.0454 40 1 4.3395 -4.9037 -3.2595 41 1 6.2679 -5.8740 -4.4396 42 1 8.0402 -7.0190 -3.1744 43 1 7.8992 -7.1906 -0.7243 44 1 5.9776 -6.2263 0.4717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095992285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:32 Heat of formation + Delta-G solvation = 99.014139 kcal Electronic energy + Delta-G solvation = -29305.466232 eV Core-core repulsion = 25138.879679 eV Total energy + Delta-G solvation = -4166.586553 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.139 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.90002 -40.92126 -40.18279 -38.70333 -36.12964 -33.92038 -32.62888 -32.42651 -31.24025 -30.69022 -30.12358 -28.84991 -27.28368 -25.29316 -24.02003 -23.78592 -22.47429 -22.40232 -21.81636 -20.08024 -19.40900 -18.12081 -17.60283 -17.16851 -16.81320 -16.61545 -16.02253 -15.80089 -15.23027 -14.97506 -14.80465 -14.75319 -14.54789 -14.27765 -14.08703 -13.65759 -13.50078 -13.41191 -13.24518 -13.15913 -12.72166 -12.56704 -12.53494 -12.34533 -12.26287 -11.78431 -11.09903 -11.06164 -10.97291 -10.93517 -10.37538 -10.19858 -10.09485 -9.98980 -9.85292 -9.71162 -9.21132 -8.82319 -8.73707 -8.34966 -7.85349 -7.73434 -6.35712 -4.41260 0.94852 1.08073 1.24895 1.52772 2.38064 2.86581 3.16478 3.24109 3.25188 3.34258 3.43755 3.59614 4.04020 4.09040 4.23146 4.41035 4.57992 4.73699 4.80889 4.94228 5.01535 5.03446 5.04970 5.11187 5.21467 5.27416 5.44614 5.47743 5.55477 5.63057 5.65037 5.66890 5.82036 5.93724 6.03683 6.18506 6.32477 6.39150 6.49400 6.59834 6.62777 6.80611 6.82890 6.88101 7.05126 7.12894 7.46484 7.55524 7.72363 7.77191 7.93739 8.33094 8.67037 9.25568 10.73355 Molecular weight = 352.14amu Principal moments of inertia in cm(-1) A = 0.009573 B = 0.002737 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.159393 B =10226.275497 C =11995.811131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.070 0.930 9 C 0.254 3.746 10 N -0.317 5.317 11 C 0.077 3.923 12 C -0.279 4.279 13 C 0.212 3.788 14 N -0.710 5.710 15 C 0.400 3.600 16 C -0.213 4.213 17 C -0.063 4.063 18 C -0.030 4.030 19 F -0.142 7.142 20 C 0.130 3.870 21 N -0.522 5.522 22 C 0.092 3.908 23 C 0.002 3.998 24 C -0.095 4.095 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.123 4.123 28 C -0.110 4.110 29 N -0.259 5.259 30 H 0.268 0.732 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.169 0.831 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.409 0.591 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.163 0.837 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.946 -19.112 3.021 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.570 4.570 8 H 0.088 0.912 9 C 0.137 3.863 10 N -0.095 5.095 11 C -0.075 4.075 12 C -0.292 4.292 13 C 0.089 3.911 14 N -0.343 5.343 15 C 0.163 3.837 16 C -0.238 4.238 17 C -0.089 4.089 18 C -0.055 4.055 19 F -0.121 7.121 20 C -0.030 4.030 21 N -0.239 5.239 22 C -0.072 4.072 23 C 0.000 4.000 24 C -0.114 4.114 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.141 4.141 28 C -0.130 4.130 29 N -0.083 5.083 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.187 0.813 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.247 0.753 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.180 0.820 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.685 -17.045 2.088 19.715 hybrid contribution 0.156 -0.275 0.743 0.808 sum 9.841 -17.320 2.830 20.121 Atomic orbital electron populations 1.69923 1.06066 1.27722 1.49453 1.24939 0.94996 0.99639 0.94364 0.86264 0.80129 0.82300 0.77829 1.19454 1.20581 1.20668 1.21245 0.94030 0.89170 1.52518 0.91163 1.19853 0.85646 0.81275 0.99519 1.49528 1.22901 1.18998 1.18056 1.22314 0.99500 0.89637 0.96054 1.19551 1.04296 1.03130 1.02201 1.19458 0.86473 0.94163 0.91057 1.45218 1.33283 1.10910 1.44875 1.18507 0.88879 0.87740 0.88597 1.21352 1.04722 0.92060 1.05710 1.21356 0.93522 1.00411 0.93644 1.18413 0.98971 0.88238 0.99853 1.91465 1.83667 1.63427 1.73515 1.22478 0.98148 0.86957 0.95385 1.67267 1.11470 1.35203 1.09974 1.20508 0.96744 0.94376 0.95573 1.17859 0.92114 0.97603 0.92397 1.21288 0.98261 0.98260 0.93574 1.21056 0.94398 0.98915 0.99803 1.21158 0.98790 0.99801 0.94369 1.21015 0.98130 1.00553 0.94420 1.21633 0.93071 0.97101 1.01200 1.77720 1.00588 1.15834 1.14137 0.92245 0.93369 0.92497 0.81329 0.91381 0.91257 0.75310 0.84040 0.83994 0.81957 0.85600 0.86103 0.86431 0.86347 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.53 13.29 55.43 0.74 -23.79 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 20.95 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.20 9.23 -34.44 -0.32 -14.51 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.25 6.04 6.26 -5.19 -0.03 6.01 16 10 N -0.32 -6.63 3.67 -62.58 -0.23 -6.86 16 11 C 0.08 1.27 11.33 -17.26 -0.20 1.08 16 12 C -0.28 -4.22 5.44 -104.76 -0.57 -4.79 16 13 C 0.21 2.39 4.30 -5.19 -0.02 2.37 16 14 N -0.71 -8.21 3.59 -61.58 -0.22 -8.43 16 15 C 0.40 4.54 7.65 -154.94 -1.19 3.35 16 16 C -0.21 -2.02 9.33 -39.23 -0.37 -2.38 16 17 C -0.06 -0.56 10.15 -39.25 -0.40 -0.96 16 18 C -0.03 -0.30 7.34 -39.29 -0.29 -0.59 16 19 F -0.14 -1.48 17.28 2.25 0.04 -1.44 16 20 C 0.13 1.35 11.16 -17.49 -0.20 1.15 16 21 N -0.52 -6.33 10.39 -12.37 -0.13 -6.46 16 22 C 0.09 1.62 6.74 -82.78 -0.56 1.06 16 23 C 0.00 0.03 5.80 -104.90 -0.61 -0.57 16 24 C -0.09 -1.39 9.75 -39.26 -0.38 -1.78 16 25 C -0.12 -1.51 10.03 -39.63 -0.40 -1.91 16 26 C -0.12 -1.39 10.04 -39.52 -0.40 -1.78 16 27 C -0.12 -1.47 10.03 -39.63 -0.40 -1.87 16 28 C -0.11 -1.50 8.78 -39.26 -0.34 -1.85 16 29 N -0.26 -5.53 12.40 33.43 0.41 -5.12 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.17 2.26 8.06 -52.49 -0.42 1.83 16 34 H 0.07 0.65 7.91 -51.93 -0.41 0.24 16 35 H 0.07 0.74 7.56 -51.93 -0.39 0.35 16 36 H 0.41 5.29 8.15 -40.82 -0.33 4.96 16 37 H 0.14 1.09 6.70 -52.49 -0.35 0.73 16 38 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.16 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 41 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 43 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.14 1.77 4.44 -52.49 -0.23 1.54 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -29.62 383.80 -10.45 -40.07 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.07 Total: 6.70 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -6.75 Total: -16.37 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: 0.57 Total: -50.66 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.62 -10.45 -40.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095992285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.087 kcal (2) G-P(sol) polarization free energy of solvation -29.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds