Wall clock time and date at job start Tue Mar 31 2020 06:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35799 * 117.00340 * 2 1 4 4 C 1.38901 * 119.89534 * 359.97438 * 3 2 1 5 5 C 1.37712 * 120.17614 * 179.76476 * 4 3 2 6 6 C 1.40038 * 119.97311 * 0.51568 * 5 4 3 7 7 C 1.46872 * 120.10305 * 179.76926 * 6 5 4 8 8 C 1.35279 * 119.99663 * 316.14195 * 7 6 5 9 9 C 1.41752 * 119.99746 * 348.48916 * 8 7 6 10 10 O 1.21750 * 120.00546 * 353.41499 * 9 8 7 11 11 C 1.47929 * 119.99618 * 173.42259 * 9 8 7 12 12 C 1.40043 * 120.56018 * 180.02562 * 11 9 8 13 13 C 1.38345 * 118.28627 * 179.97438 * 12 11 9 14 14 C 1.38366 * 119.31051 * 359.97438 * 13 12 11 15 15 N 1.31931 * 121.08213 * 359.97438 * 14 13 12 16 16 C 1.31693 * 121.88080 * 359.97438 * 15 14 13 17 17 C 1.40038 * 119.79506 * 359.48556 * 6 5 4 18 18 C 1.38053 * 119.82285 * 0.25882 * 17 6 5 19 19 O 1.35999 * 119.98449 * 179.97438 * 18 17 6 20 20 C 1.42902 * 117.00278 * 359.97438 * 19 18 17 21 21 C 1.52996 * 109.47088 * 180.02562 * 20 19 18 22 22 C 1.50704 * 109.46921 * 180.02562 * 21 20 19 23 23 H 1.08006 * 119.99708 * 359.97438 * 22 21 20 24 24 C 1.37878 * 119.99895 * 179.97438 * 22 21 20 25 25 N 1.31509 * 119.99864 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99628 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46981 * 90.00449 * 26 24 22 28 28 H 1.48504 * 109.46712 * 210.00007 * 26 24 22 29 29 H 1.48496 * 109.47375 * 329.99711 * 26 24 22 30 30 H 1.09002 * 109.47252 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46943 * 300.00036 * 1 2 3 32 32 H 1.08996 * 109.47290 * 60.00040 * 1 2 3 33 33 H 1.07997 * 119.91069 * 0.02562 * 4 3 2 34 34 H 1.08002 * 120.01516 * 180.27941 * 5 4 3 35 35 H 1.07995 * 120.00220 * 136.14501 * 7 6 5 36 36 H 1.07995 * 119.99979 * 168.48498 * 8 7 6 37 37 H 1.07995 * 120.85365 * 359.69320 * 12 11 9 38 38 H 1.07996 * 120.33868 * 179.97438 * 13 12 11 39 39 H 1.07996 * 119.46068 * 180.02562 * 14 13 12 40 40 H 1.08007 * 119.72084 * 180.02562 * 16 15 14 41 41 H 1.07999 * 120.08618 * 180.27586 * 17 6 5 42 42 H 1.09003 * 109.47096 * 300.00434 * 20 19 18 43 43 H 1.09005 * 109.46583 * 59.99864 * 20 19 18 44 44 H 1.08999 * 109.47006 * 299.99915 * 21 20 19 45 45 H 1.08991 * 109.47421 * 60.00336 * 21 20 19 46 46 H 0.97003 * 119.99702 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2099 0.0000 4 6 1.2870 2.3735 -0.0005 5 6 1.9062 3.6036 0.0043 6 6 3.3044 3.6830 -0.0010 7 6 3.9677 4.9934 -0.0010 8 6 3.5163 5.9800 -0.8089 9 6 2.5714 5.6878 -1.8244 10 8 2.2562 4.5335 -2.0489 11 6 1.9684 6.7856 -2.6115 12 6 1.0334 6.5105 -3.6171 13 6 0.4988 7.5729 -4.3237 14 6 0.9006 8.8610 -4.0172 15 7 1.7829 9.0905 -3.0635 16 6 2.3193 8.1132 -2.3624 17 6 4.0680 2.5092 -0.0005 18 6 3.4385 1.2805 0.0000 19 8 4.1769 0.1385 0.0000 20 6 5.5984 0.2850 -0.0011 21 6 6.2536 -1.0976 -0.0015 22 6 7.7527 -0.9431 -0.0020 23 1 8.1939 0.0427 -0.0023 24 6 8.5608 -2.0602 -0.0019 25 7 8.0235 -3.2605 -0.0019 26 14 10.4190 -1.8686 -0.0032 27 1 10.9123 -1.8172 1.3966 28 1 11.0352 -3.0244 -0.7030 29 1 10.7866 -0.6122 -0.7041 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 0.2087 2.3134 -0.0005 34 1 1.3139 4.5066 0.0085 35 1 4.8159 5.1692 0.6440 36 1 3.8757 6.9902 -0.6802 37 1 0.7406 5.4947 -3.8383 38 1 -0.2246 7.3987 -5.1065 39 1 0.4845 9.6922 -4.5670 40 1 3.0382 8.3409 -1.5892 41 1 5.1466 2.5650 -0.0001 42 1 5.9066 0.8330 -0.8915 43 1 5.9077 0.8338 0.8885 44 1 5.9455 -1.6460 0.8887 45 1 5.9443 -1.6460 -0.8912 46 1 8.5921 -4.0464 -0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096188023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:34 Heat of formation + Delta-G solvation = -17.667803 kcal Electronic energy + Delta-G solvation = -29502.372839 eV Core-core repulsion = 25324.175470 eV Total energy + Delta-G solvation = -4178.197369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.146 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.01307 -40.28218 -39.28728 -38.12299 -36.70176 -33.74775 -33.27674 -32.90827 -32.06482 -30.61905 -29.91800 -28.96679 -27.20220 -25.69654 -24.99309 -24.08158 -23.16467 -22.39339 -21.50042 -20.51098 -19.29347 -18.30190 -17.98868 -17.12500 -16.76334 -16.50177 -16.21370 -15.83675 -15.80901 -15.25860 -15.03577 -14.94634 -14.63924 -14.56217 -14.47971 -13.95953 -13.90905 -13.60109 -13.53826 -13.29039 -12.76288 -12.57306 -12.52173 -12.29601 -12.06193 -11.68229 -11.48465 -11.20281 -11.06019 -10.88591 -10.78618 -10.54094 -10.33687 -10.21106 -9.88470 -9.79101 -9.62357 -9.60905 -9.45425 -9.25788 -8.46442 -8.40870 -7.27055 -6.06732 -4.11236 -0.06736 0.69508 0.83066 1.53932 1.88619 2.79763 3.29111 3.34915 3.37787 3.42441 3.51477 3.73372 3.83398 3.92445 4.03016 4.34588 4.43084 4.47113 4.54845 4.58467 4.81427 4.93843 4.98455 5.06957 5.12543 5.16881 5.18471 5.25448 5.29426 5.44218 5.48697 5.54166 5.60697 5.65863 5.77350 5.81426 6.05580 6.08278 6.09342 6.14575 6.31493 6.35599 6.57536 6.72093 6.82836 7.35074 7.35565 7.45700 7.59495 7.70474 7.87393 8.15212 8.28301 8.94396 9.52584 11.04807 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.002217 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.521645 B =12624.647377 C =14395.754161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.300 6.300 3 C 0.108 3.892 4 C -0.183 4.183 5 C -0.055 4.055 6 C -0.092 4.092 7 C 0.028 3.972 8 C -0.265 4.265 9 C 0.417 3.583 10 O -0.431 6.431 11 C -0.207 4.207 12 C -0.024 4.024 13 C -0.183 4.183 14 C 0.119 3.881 15 N -0.493 5.493 16 C 0.141 3.859 17 C -0.148 4.148 18 C 0.108 3.892 19 O -0.305 6.305 20 C 0.064 3.936 21 C 0.026 3.974 22 C -0.525 4.525 23 H 0.058 0.942 24 C 0.060 3.940 25 N -0.889 5.889 26 Si 0.898 3.102 27 H -0.279 1.279 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.130 0.870 34 H 0.113 0.887 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.139 0.861 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.171 23.285 -3.513 29.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.213 6.213 3 C 0.062 3.938 4 C -0.202 4.202 5 C -0.073 4.073 6 C -0.092 4.092 7 C 0.009 3.991 8 C -0.284 4.284 9 C 0.298 3.702 10 O -0.308 6.308 11 C -0.210 4.210 12 C -0.049 4.049 13 C -0.203 4.203 14 C -0.037 4.037 15 N -0.201 5.201 16 C -0.017 4.017 17 C -0.167 4.167 18 C 0.061 3.939 19 O -0.219 6.219 20 C -0.010 4.010 21 C -0.011 4.011 22 C -0.563 4.563 23 H 0.076 0.924 24 C -0.143 4.143 25 N -0.527 5.527 26 Si 0.726 3.274 27 H -0.205 1.205 28 H -0.211 1.211 29 H -0.198 1.198 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.147 0.853 34 H 0.131 0.869 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.177 0.823 40 H 0.182 0.818 41 H 0.157 0.843 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.024 22.943 -3.473 29.382 hybrid contribution 0.699 -0.306 -0.336 0.834 sum -17.325 22.636 -3.808 28.759 Atomic orbital electron populations 1.23033 0.79152 1.03766 1.00832 1.86199 1.20509 1.26110 1.88515 1.18496 0.89406 0.84935 1.00998 1.20767 0.99388 0.91389 1.08647 1.20567 0.92704 0.96435 0.97634 1.18548 0.93109 0.92031 1.05520 1.22731 0.93396 0.90725 0.92212 1.22372 1.04848 1.00662 1.00515 1.19100 0.80323 0.87725 0.83041 1.90828 1.55021 1.21643 1.63356 1.21729 1.01714 0.96684 1.00875 1.21874 0.91419 1.00586 0.91064 1.22191 1.02484 0.93695 1.01954 1.23023 0.91724 0.96364 0.92627 1.67751 1.09514 1.36261 1.06620 1.23183 0.95364 0.87354 0.95777 1.21192 1.00327 0.90281 1.04904 1.18196 0.88454 0.86933 1.00311 1.86284 1.20932 1.27001 1.87647 1.23316 0.75049 1.03235 0.99365 1.19106 0.94169 0.88919 0.98935 1.20973 0.90367 0.92862 1.52135 0.92409 1.24995 0.99087 0.95168 0.95008 1.69982 1.35414 0.97556 1.49730 0.86496 0.84988 0.77766 0.78174 1.20520 1.21078 1.19792 0.88362 0.92991 0.92962 0.85262 0.86902 0.84384 0.84576 0.83744 0.84165 0.82332 0.81812 0.84338 0.93331 0.93280 0.95362 0.95374 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.30 -5.09 10.26 -33.78 -0.35 -5.43 16 3 C 0.11 1.83 6.71 -38.88 -0.26 1.57 16 4 C -0.18 -2.53 9.01 -39.53 -0.36 -2.89 16 5 C -0.05 -0.72 6.63 -39.10 -0.26 -0.98 16 6 C -0.09 -1.24 4.48 -105.06 -0.47 -1.71 16 7 C 0.03 0.28 9.80 -37.14 -0.36 -0.09 16 8 C -0.27 -2.31 9.23 -39.29 -0.36 -2.67 16 9 C 0.42 4.43 5.99 -34.27 -0.21 4.22 16 10 O -0.43 -5.94 12.12 5.14 0.06 -5.88 16 11 C -0.21 -1.89 5.89 -104.76 -0.62 -2.50 16 12 C -0.02 -0.20 9.72 -38.87 -0.38 -0.58 16 13 C -0.18 -1.19 10.10 -39.49 -0.40 -1.59 16 14 C 0.12 0.82 11.17 -17.46 -0.20 0.62 16 15 N -0.49 -4.34 10.35 -12.89 -0.13 -4.47 16 16 C 0.14 1.14 10.61 -17.12 -0.18 0.96 16 17 C -0.15 -2.39 8.78 -38.97 -0.34 -2.73 16 18 C 0.11 2.03 6.69 -39.19 -0.26 1.77 16 19 O -0.30 -6.76 9.91 -34.40 -0.34 -7.10 16 20 C 0.06 1.43 4.68 37.16 0.17 1.60 16 21 C 0.03 0.70 5.34 -27.88 -0.15 0.55 16 22 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 23 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 24 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 25 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 26 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 32 H 0.05 0.50 7.65 -51.93 -0.40 0.11 16 33 H 0.13 1.42 6.27 -52.49 -0.33 1.09 16 34 H 0.11 1.29 7.05 -52.49 -0.37 0.92 16 35 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.14 0.73 6.30 -52.49 -0.33 0.39 16 37 H 0.14 1.20 7.74 -52.49 -0.41 0.79 16 38 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.16 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.16 0.90 6.24 -52.48 -0.33 0.57 16 41 H 0.14 2.12 6.28 -52.49 -0.33 1.79 16 42 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 43 H 0.05 1.01 7.66 -51.93 -0.40 0.61 16 44 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 391.15 15.07 5.89 5.89 Total: -1.00 -35.43 391.15 -8.96 -44.39 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.76 Total: -1.08 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -4.05 Total: -16.69 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.60 Total: -30.55 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.63 Total: -18.41 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.43 -8.96 -44.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096188023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.727 kcal (2) G-P(sol) polarization free energy of solvation -35.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds