Wall clock time and date at job start Tue Mar 31 2020 05:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.40259 * 125.74631 * 2 1 4 4 C 1.30950 * 109.00140 * 180.15570 * 3 2 1 5 5 C 1.39762 * 107.60218 * 0.04588 * 4 3 2 6 6 C 1.33644 * 125.74659 * 179.97438 * 2 1 3 7 7 C 1.50511 * 128.87446 * 359.64170 * 6 2 1 8 8 C 1.53121 * 110.15314 * 158.30709 * 7 6 2 9 9 C 1.51522 * 110.00557 * 47.29770 * 8 7 6 10 10 C 1.34961 * 121.88874 * 122.16497 * 9 8 7 11 11 C 1.47160 * 119.99629 * 187.96079 * 10 9 8 12 12 C 1.39903 * 120.15013 * 33.04268 * 11 10 9 13 13 C 1.37886 * 119.93458 * 179.69923 * 12 11 10 14 14 C 1.38332 * 120.23616 * 0.54036 * 13 12 11 15 15 C 1.38869 * 120.29979 * 359.48139 * 14 13 12 16 16 O 1.35906 * 119.97844 * 180.25250 * 15 14 13 17 17 C 1.42901 * 116.99545 * 0.02562 * 16 15 14 18 18 C 1.53002 * 109.47130 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47038 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00512 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99872 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99947 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00101 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46652 * 90.00032 * 23 21 19 25 25 H 1.48490 * 109.47232 * 210.00002 * 23 21 19 26 26 H 1.48501 * 109.47117 * 330.00351 * 23 21 19 27 27 C 1.38415 * 120.05317 * 0.23619 * 15 14 13 28 28 C 1.47981 * 130.44213 * 179.68664 * 5 4 3 29 29 O 1.21769 * 123.13720 * 353.42141 * 28 5 4 30 30 H 1.08994 * 109.46463 * 270.02121 * 1 2 3 31 31 H 1.08992 * 109.46939 * 30.02407 * 1 2 3 32 32 H 1.08997 * 109.46600 * 150.02579 * 1 2 3 33 33 H 1.07996 * 126.20103 * 180.02562 * 4 3 2 34 34 H 1.09004 * 109.35173 * 38.09884 * 7 6 2 35 35 H 1.09000 * 109.24530 * 278.45488 * 7 6 2 36 36 H 1.08997 * 109.38691 * 287.13280 * 8 7 6 37 37 H 1.09003 * 109.29376 * 167.40676 * 8 7 6 38 38 H 1.07996 * 120.00647 * 7.95643 * 10 9 8 39 39 H 1.08000 * 120.03202 * 359.96256 * 12 11 10 40 40 H 1.08007 * 119.88033 * 180.27478 * 13 12 11 41 41 H 1.08008 * 119.85313 * 179.76285 * 14 13 12 42 42 H 1.09002 * 109.47193 * 299.99508 * 17 16 15 43 43 H 1.08997 * 109.47441 * 59.99191 * 17 16 15 44 44 H 1.08998 * 109.47201 * 299.99536 * 18 17 16 45 45 H 1.09002 * 109.46846 * 59.99900 * 18 17 16 46 46 H 0.97005 * 120.00043 * 179.97438 * 22 21 19 47 47 H 1.08003 * 120.11339 * 179.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2845 1.1384 0.0000 4 6 3.5384 0.7611 -0.0034 5 6 3.5593 -0.6364 -0.0067 6 6 2.2458 -1.0847 0.0005 7 6 1.8467 -2.5359 0.0085 8 6 2.9919 -3.4009 -0.5251 9 6 4.2953 -3.0009 0.1360 10 6 5.0436 -3.8844 0.8295 11 6 6.2072 -3.4178 1.6001 12 6 6.1913 -2.1545 2.2011 13 6 7.2816 -1.7243 2.9274 14 6 8.3966 -2.5330 3.0550 15 6 8.4231 -3.7885 2.4621 16 8 9.5200 -4.5797 2.5960 17 6 10.6081 -4.0561 3.3603 18 6 11.7433 -5.0812 3.4000 19 6 12.8909 -4.5288 4.2054 20 1 12.8178 -3.5452 4.6454 21 6 14.0338 -5.2796 4.3816 22 7 15.0352 -4.7978 5.0849 23 14 14.1595 -6.9818 3.6224 24 1 14.7388 -6.8741 2.2593 25 1 15.0333 -7.8365 4.4655 26 1 12.8062 -7.5876 3.5387 27 6 7.3332 -4.2349 1.7352 28 6 4.6998 -1.5793 -0.0173 29 8 5.8573 -1.2226 -0.1420 30 1 -0.3632 0.0004 1.0276 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3632 -0.8902 -0.5134 33 1 4.4003 1.4118 -0.0038 34 1 0.9673 -2.6721 -0.6211 35 1 1.6107 -2.8380 1.0288 36 1 3.0764 -3.2645 -1.6032 37 1 2.7831 -4.4486 -0.3085 38 1 4.7884 -4.9337 0.8189 39 1 5.3242 -1.5187 2.0999 40 1 7.2666 -0.7507 3.3948 41 1 9.2487 -2.1883 3.6222 42 1 10.9657 -3.1352 2.8997 43 1 10.2716 -3.8475 4.3758 44 1 11.3855 -6.0019 3.8608 45 1 12.0798 -5.2900 2.3845 46 1 15.8392 -5.3261 5.2092 47 1 7.3529 -5.2110 1.2733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096189875.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:45 Heat of formation + Delta-G solvation = 42.004975 kcal Electronic energy + Delta-G solvation = -29337.713008 eV Core-core repulsion = 25259.821907 eV Total energy + Delta-G solvation = -4077.891102 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.02650 -39.97930 -39.02912 -37.12552 -36.18768 -33.99371 -33.37323 -32.92202 -31.12138 -30.18365 -29.53647 -28.79222 -27.59925 -25.71183 -24.90958 -23.61380 -22.26955 -22.14901 -20.94587 -20.78559 -20.11950 -18.28872 -17.48037 -17.38493 -16.69487 -16.50259 -15.88089 -15.59634 -15.51636 -15.39161 -15.12769 -14.80784 -14.60866 -14.31160 -14.13428 -13.78856 -13.69428 -13.43178 -13.25140 -13.19390 -13.07458 -12.85218 -12.78768 -12.47407 -12.07820 -12.00485 -11.69133 -11.42002 -11.33628 -11.29245 -10.84041 -10.67230 -10.18075 -10.04563 -9.90493 -9.83756 -9.79493 -9.70890 -9.32403 -8.98243 -8.60761 -8.35596 -7.78124 -6.11766 -4.12551 0.48030 1.05966 1.63040 1.74879 1.84403 2.16846 3.10532 3.30118 3.37082 3.42566 3.69926 3.80664 3.88143 3.99234 4.01550 4.21070 4.32504 4.40693 4.51809 4.60220 4.64170 4.75883 4.87476 4.91523 5.04639 5.08279 5.12592 5.22365 5.23710 5.29700 5.32998 5.37784 5.46806 5.60300 5.71955 5.93665 5.95461 5.97677 6.01898 6.08950 6.21270 6.33845 6.44363 6.50256 6.64635 6.68828 6.89464 7.12314 7.12790 7.25503 7.55442 7.64464 7.94907 8.40704 8.89145 9.48520 11.00751 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.028005 B = 0.001773 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.591644 B =15786.542862 C =16404.637315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.353 5.353 3 N -0.306 5.306 4 C 0.108 3.892 5 C -0.320 4.320 6 C 0.138 3.862 7 C -0.058 4.058 8 C -0.063 4.063 9 C -0.201 4.201 10 C -0.023 4.023 11 C -0.044 4.044 12 C -0.129 4.129 13 C -0.081 4.081 14 C -0.197 4.197 15 C 0.139 3.861 16 O -0.320 6.320 17 C 0.072 3.928 18 C -0.009 4.009 19 C -0.527 4.527 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.898 5.898 23 Si 0.881 3.119 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.263 1.263 27 C -0.137 4.137 28 C 0.465 3.535 29 O -0.437 6.437 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.194 0.806 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.137 0.863 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.132 0.868 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.028 0.972 45 H 0.023 0.977 46 H 0.266 0.734 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.644 5.454 -11.741 37.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.130 5.130 3 N -0.126 5.126 4 C -0.077 4.077 5 C -0.332 4.332 6 C 0.003 3.997 7 C -0.096 4.096 8 C -0.101 4.101 9 C -0.203 4.203 10 C -0.041 4.041 11 C -0.045 4.045 12 C -0.147 4.147 13 C -0.099 4.099 14 C -0.216 4.216 15 C 0.092 3.908 16 O -0.234 6.234 17 C -0.002 4.002 18 C -0.046 4.046 19 C -0.565 4.565 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.536 5.536 23 Si 0.708 3.292 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.188 1.188 27 C -0.156 4.156 28 C 0.343 3.657 29 O -0.311 6.311 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.211 0.789 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.154 0.846 39 H 0.131 0.869 40 H 0.140 0.860 41 H 0.150 0.850 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.046 0.954 45 H 0.042 0.958 46 H 0.075 0.925 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -35.770 6.456 -11.804 38.216 hybrid contribution 0.710 -1.126 -0.171 1.342 sum -35.060 5.330 -11.975 37.430 Atomic orbital electron populations 1.22023 0.73806 1.05021 1.04071 1.48302 1.07104 1.03683 1.53904 1.77586 1.01865 1.06213 1.26935 1.23720 0.95028 0.93981 0.94927 1.20916 0.93917 0.94548 1.23862 1.21863 0.90825 0.91076 0.95957 1.20315 0.99248 0.86306 1.03762 1.20522 0.89568 0.99673 1.00344 1.22773 0.98223 0.95234 1.04021 1.22123 0.91105 0.98383 0.92479 1.18573 0.93438 0.94212 0.98241 1.21067 0.99132 0.94739 0.99749 1.20761 0.92618 0.98972 0.97556 1.21502 1.00494 0.94894 1.04688 1.18961 0.87764 0.89881 0.94181 1.86116 1.23904 1.43380 1.69953 1.23078 0.84713 0.99010 0.93394 1.19582 0.92133 0.94948 0.97953 1.20851 0.98218 1.04476 1.32922 0.90737 1.24934 0.95303 0.98205 0.94576 1.69896 1.05781 1.38030 1.39879 0.86753 0.78623 0.84430 0.79443 1.20059 1.21191 1.18750 1.20443 0.91854 1.00895 1.02382 1.19838 0.86753 0.87404 0.71749 1.90765 1.21096 1.81946 1.37299 0.89996 0.88686 0.89083 0.78917 0.89147 0.88349 0.90062 0.89068 0.84553 0.86934 0.86018 0.85015 0.92493 0.92511 0.95419 0.95826 0.92469 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.25 11.30 59.85 0.68 0.92 16 2 N -0.35 -2.62 3.97 -63.35 -0.25 -2.87 16 3 N -0.31 -3.13 12.53 30.62 0.38 -2.74 16 4 C 0.11 1.12 12.07 -17.36 -0.21 0.91 16 5 C -0.32 -3.28 6.12 -105.13 -0.64 -3.92 16 6 C 0.14 1.02 6.83 -81.69 -0.56 0.47 16 7 C -0.06 -0.21 5.89 -27.91 -0.16 -0.38 16 8 C -0.06 -0.31 5.97 -27.42 -0.16 -0.47 16 9 C -0.20 -1.82 5.45 -101.11 -0.55 -2.37 16 10 C -0.02 -0.22 9.57 -37.13 -0.36 -0.58 16 11 C -0.04 -0.60 5.19 -105.08 -0.55 -1.15 16 12 C -0.13 -1.80 7.17 -39.09 -0.28 -2.08 16 13 C -0.08 -1.18 10.02 -39.68 -0.40 -1.58 16 14 C -0.20 -3.23 9.04 -39.31 -0.36 -3.59 16 15 C 0.14 2.44 6.68 -39.28 -0.26 2.18 16 16 O -0.32 -6.42 10.13 -19.44 -0.20 -6.62 16 17 C 0.07 1.52 4.68 37.16 0.17 1.70 16 18 C -0.01 -0.21 4.41 -27.88 -0.12 -0.34 16 19 C -0.53 -15.03 9.66 -34.44 -0.33 -15.36 16 20 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 22 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 23 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 27 C -0.14 -2.08 9.73 -38.94 -0.38 -2.46 16 28 C 0.47 5.49 4.68 -31.32 -0.15 5.34 16 29 O -0.44 -6.72 15.33 5.13 0.08 -6.64 16 30 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.00 7.44 -51.93 -0.39 -0.38 16 33 H 0.19 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.09 0.09 7.56 -51.93 -0.39 -0.30 16 35 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.24 7.99 -51.93 -0.41 -0.18 16 38 H 0.14 0.91 8.02 -52.49 -0.42 0.49 16 39 H 0.11 1.47 5.99 -52.49 -0.31 1.15 16 40 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 41 H 0.13 2.12 6.28 -52.48 -0.33 1.79 16 42 H 0.06 1.17 7.66 -51.93 -0.40 0.78 16 43 H 0.06 1.15 7.66 -51.93 -0.40 0.75 16 44 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 45 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 46 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 390.45 15.07 5.88 5.88 Total: -1.00 -36.41 390.45 -9.08 -45.49 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -6.37 Total: -2.12 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -4.71 Total: -20.75 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.91 Total: -32.34 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.12 Total: -13.26 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.41 -9.08 -45.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096189875.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.495 kcal (2) G-P(sol) polarization free energy of solvation -36.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds