Wall clock time and date at job start Tue Mar 31 2020 06:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39731 * 125.77502 * 2 1 4 4 C 1.36161 * 107.85690 * 180.12313 * 3 2 1 5 5 N 1.39338 * 126.26581 * 179.90170 * 4 3 2 6 6 C 1.34779 * 120.00340 * 359.41199 * 5 4 3 7 7 O 1.21741 * 119.99170 * 0.27518 * 6 5 4 8 8 C 1.46200 * 120.00557 * 180.27751 * 6 5 4 9 9 C 1.35003 * 120.00515 * 173.22109 * 8 6 5 10 10 C 1.47000 * 119.99522 * 349.05191 * 9 8 6 11 11 C 1.39985 * 120.29250 * 136.42162 * 10 9 8 12 12 C 1.37434 * 120.17473 * 180.08975 * 11 10 9 13 13 C 1.39620 * 120.45859 * 0.02562 * 12 11 10 14 14 C 1.39205 * 119.15330 * 359.73621 * 13 12 11 15 15 C 1.37280 * 120.96102 * 0.12480 * 14 13 12 16 16 C 1.51685 * 107.00249 * 180.56770 * 14 13 12 17 17 C 1.54696 * 101.90416 * 15.39706 * 16 14 13 18 18 O 1.36042 * 129.69250 * 179.07059 * 13 12 11 19 19 N 1.35818 * 107.46761 * 359.63986 * 4 3 2 20 20 C 1.46495 * 126.09316 * 180.19665 * 19 4 3 21 21 C 1.50699 * 109.47730 * 89.99485 * 20 19 4 22 22 H 1.08003 * 119.99319 * 359.97438 * 21 20 19 23 23 C 1.37871 * 120.00257 * 180.02562 * 21 20 19 24 24 N 1.31517 * 120.00236 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00161 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46851 * 359.97438 * 25 23 21 27 27 H 1.48491 * 109.47350 * 119.99590 * 25 23 21 28 28 H 1.48502 * 109.47069 * 240.00080 * 25 23 21 29 29 N 1.30826 * 125.77531 * 179.71279 * 2 1 3 30 30 H 1.08996 * 109.47329 * 270.26270 * 1 2 3 31 31 H 1.08999 * 109.47054 * 30.26286 * 1 2 3 32 32 H 1.09000 * 109.46829 * 150.25852 * 1 2 3 33 33 H 1.07997 * 126.07509 * 0.02562 * 3 2 1 34 34 H 0.97006 * 120.00193 * 179.68614 * 5 4 3 35 35 H 1.08001 * 119.99632 * 353.21069 * 8 6 5 36 36 H 1.07995 * 120.00591 * 169.05018 * 9 8 6 37 37 H 1.07999 * 119.91805 * 0.10441 * 11 10 9 38 38 H 1.08001 * 119.76793 * 180.02562 * 12 11 10 39 39 H 1.07991 * 120.08320 * 180.02562 * 15 14 13 40 40 H 1.09007 * 110.93956 * 133.55058 * 16 14 13 41 41 H 1.08996 * 110.94185 * 257.20646 * 16 14 13 42 42 H 1.08999 * 110.74257 * 92.96789 * 17 16 14 43 43 H 1.08998 * 110.74178 * 216.11937 * 17 16 14 44 44 H 1.09002 * 109.47382 * 209.99548 * 20 19 4 45 45 H 1.09008 * 109.47185 * 329.99378 * 20 19 4 46 46 H 0.97001 * 120.00120 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1337 0.0000 4 6 3.6195 0.7148 -0.0028 5 7 4.7494 1.5301 -0.0057 6 6 4.6129 2.8709 -0.0178 7 8 3.5023 3.3696 -0.0213 8 6 5.7984 3.7265 -0.0270 9 6 5.6663 5.0616 -0.1771 10 6 4.3698 5.6323 -0.5700 11 6 3.8811 6.7792 0.0666 12 6 2.6678 7.3096 -0.3013 13 6 1.9110 6.7118 -1.3109 14 6 2.4034 5.5743 -1.9444 15 6 3.6151 5.0363 -1.5882 16 6 1.3803 5.1702 -2.9887 17 6 0.5097 6.4447 -3.0924 18 8 0.6939 7.0623 -1.8076 19 7 3.6088 -0.6434 0.0037 20 6 4.7858 -1.5156 0.0075 21 6 5.1899 -1.8080 1.4296 22 1 4.6265 -1.3858 2.2486 23 6 6.2793 -2.6134 1.6850 24 7 6.9656 -3.1271 0.6876 25 14 6.7798 -2.9763 3.4478 26 1 5.8519 -2.2846 4.3782 27 1 6.7213 -4.4406 3.6875 28 1 8.1643 -2.4917 3.6790 29 7 2.2719 -1.0614 0.0053 30 1 -0.3634 0.0047 1.0276 31 1 -0.3633 0.8876 -0.5179 32 1 -0.3633 -0.8923 -0.5098 33 1 1.9875 2.1599 0.0004 34 1 5.6343 1.1328 -0.0029 35 1 6.7799 3.2903 0.0865 36 1 6.5130 5.7104 -0.0086 37 1 4.4591 7.2488 0.8488 38 1 2.2973 8.1950 0.1939 39 1 3.9838 4.1536 -2.0894 40 1 1.8622 4.9489 -3.9411 41 1 0.7892 4.3206 -2.6467 42 1 0.8710 7.0953 -3.8889 43 1 -0.5368 6.1853 -3.2527 44 1 4.5477 -2.4495 -0.5017 45 1 5.6075 -1.0194 -0.5090 46 1 7.7319 -3.6941 0.8673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096313801.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:30 Heat of formation + Delta-G solvation = 66.484992 kcal Electronic energy + Delta-G solvation = -30712.372422 eV Core-core repulsion = 26570.116943 eV Total energy + Delta-G solvation = -4142.255479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.16435 -40.76618 -39.40315 -37.49885 -34.70177 -33.78903 -33.50844 -32.73661 -32.05277 -29.56116 -29.31829 -28.99975 -28.02612 -26.02558 -24.57934 -23.37177 -22.78135 -22.09659 -21.57718 -20.25044 -19.65520 -18.71023 -17.49743 -17.22667 -16.90497 -16.55330 -16.37429 -16.15360 -15.31499 -15.08847 -14.65579 -14.34164 -14.28108 -14.07473 -13.76602 -13.49104 -13.34128 -13.20240 -12.95801 -12.83753 -12.77619 -12.60372 -12.47639 -12.04549 -11.91766 -11.77942 -11.69335 -11.55931 -11.11987 -11.05479 -10.91848 -10.87403 -10.36513 -10.32477 -9.88217 -9.79552 -9.70682 -9.49128 -8.73546 -8.65300 -7.88445 -7.78541 -7.39908 -6.34411 -4.42691 0.61652 1.38440 1.76035 2.65369 2.92070 3.14303 3.17096 3.23133 3.29393 3.36342 3.71538 3.73917 3.84681 4.24065 4.34076 4.44712 4.68052 4.78181 4.79572 4.88112 4.99027 5.14659 5.18346 5.25315 5.32346 5.37161 5.52634 5.62924 5.64523 5.69127 5.86106 5.91049 6.03332 6.09725 6.16429 6.20850 6.26335 6.36225 6.40118 6.45352 6.50991 6.55267 6.71172 6.84119 7.04494 7.13951 7.53781 7.59337 7.66480 7.79382 7.94754 8.36874 8.62672 8.71791 9.25101 10.72701 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.013261 B = 0.002858 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.976208 B = 9793.928124 C =11184.538906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.048 3.952 3 C -0.292 4.292 4 C 0.301 3.699 5 N -0.634 5.634 6 C 0.542 3.458 7 O -0.503 6.503 8 C -0.209 4.209 9 C -0.013 4.013 10 C -0.103 4.103 11 C -0.063 4.063 12 C -0.153 4.153 13 C 0.115 3.885 14 C -0.182 4.182 15 C 0.015 3.985 16 C -0.108 4.108 17 C 0.052 3.948 18 O -0.307 6.307 19 N -0.347 5.347 20 C 0.257 3.743 21 C -0.539 4.539 22 H 0.065 0.935 23 C 0.067 3.933 24 N -0.890 5.890 25 Si 0.905 3.095 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.280 1.280 29 N -0.285 5.285 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.162 0.838 34 H 0.416 0.584 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.105 0.895 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.599 20.250 -7.031 21.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.116 4.116 3 C -0.323 4.323 4 C 0.079 3.921 5 N -0.280 5.280 6 C 0.332 3.668 7 O -0.379 6.379 8 C -0.230 4.230 9 C -0.033 4.033 10 C -0.103 4.103 11 C -0.081 4.081 12 C -0.172 4.172 13 C 0.070 3.930 14 C -0.183 4.183 15 C -0.003 4.003 16 C -0.145 4.145 17 C -0.023 4.023 18 O -0.221 6.221 19 N -0.133 5.133 20 C 0.140 3.860 21 C -0.578 4.578 22 H 0.083 0.917 23 C -0.137 4.137 24 N -0.528 5.528 25 Si 0.732 3.268 26 H -0.195 1.195 27 H -0.205 1.205 28 H -0.206 1.206 29 N -0.110 5.110 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.179 0.821 34 H 0.252 0.748 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.135 0.865 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.123 0.877 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.214 19.272 -6.995 21.155 hybrid contribution 1.145 -0.106 0.973 1.506 sum -4.069 19.166 -6.023 20.498 Atomic orbital electron populations 1.20007 0.87729 1.02188 1.02108 1.22008 0.96455 0.91118 1.02067 1.21269 0.89049 1.00355 1.21666 1.18044 0.88094 0.83244 1.02707 1.42779 1.08195 1.05695 1.71311 1.18363 0.90312 0.80968 0.77187 1.90835 1.26439 1.72947 1.47687 1.22871 0.97954 0.94232 1.07919 1.22273 0.95700 0.94091 0.91200 1.18663 0.95868 0.97006 0.98786 1.20831 0.94844 0.94299 0.98102 1.19988 0.94898 1.02254 1.00079 1.19726 0.84975 0.93041 0.95240 1.20496 0.97460 0.97703 1.02608 1.20182 0.91349 0.95003 0.93757 1.21761 0.95636 0.98650 0.98503 1.23804 1.01596 0.92873 0.83993 1.86772 1.31295 1.70473 1.33562 1.49493 1.06390 1.02158 1.55285 1.19602 0.77877 0.89699 0.98861 1.21390 1.13241 1.31725 0.91398 0.91684 1.24936 0.95699 0.94883 0.98191 1.69926 1.19222 1.32599 1.31068 0.86307 0.78350 0.78433 0.83675 1.19549 1.20531 1.20625 1.77321 0.86238 1.21872 1.25603 0.91380 0.91291 0.91611 0.82118 0.74775 0.84376 0.84352 0.85263 0.85753 0.86550 0.89399 0.88917 0.90787 0.87740 0.92627 0.93859 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.01 0.38 -0.56 16 2 C 0.05 0.98 7.20 -82.46 -0.59 0.39 16 3 C -0.29 -5.97 9.58 -39.77 -0.38 -6.35 16 4 C 0.30 6.33 7.68 -152.77 -1.17 5.16 16 5 N -0.63 -10.99 5.41 -12.67 -0.07 -11.06 16 6 C 0.54 8.36 6.75 -13.06 -0.09 8.27 16 7 O -0.50 -8.72 9.27 5.15 0.05 -8.67 16 8 C -0.21 -2.33 9.91 -37.54 -0.37 -2.71 16 9 C -0.01 -0.13 9.82 -37.18 -0.36 -0.49 16 10 C -0.10 -1.22 4.54 -105.01 -0.48 -1.70 16 11 C -0.06 -0.68 9.77 -39.22 -0.38 -1.07 16 12 C -0.15 -1.80 10.04 -39.36 -0.40 -2.19 16 13 C 0.12 1.50 7.04 -38.71 -0.27 1.23 16 14 C -0.18 -2.34 6.25 -104.13 -0.65 -2.99 16 15 C 0.02 0.20 6.59 -39.25 -0.26 -0.06 16 16 C -0.11 -1.10 7.12 -26.51 -0.19 -1.29 16 17 C 0.05 0.46 8.00 38.05 0.30 0.76 16 18 O -0.31 -3.81 11.10 -19.87 -0.22 -4.03 16 19 N -0.35 -8.16 3.62 -61.45 -0.22 -8.39 16 20 C 0.26 6.44 6.02 -5.20 -0.03 6.41 16 21 C -0.54 -14.54 9.39 -34.44 -0.32 -14.86 16 22 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 23 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -24.30 13.29 55.43 0.74 -23.56 16 25 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 N -0.29 -6.69 12.56 33.64 0.42 -6.27 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.16 3.23 5.82 -52.49 -0.31 2.92 16 34 H 0.42 6.68 7.97 -40.82 -0.33 6.35 16 35 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.12 1.57 7.04 -52.49 -0.37 1.20 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.04 1.04 7.52 -51.92 -0.39 0.65 16 46 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 389.56 15.07 5.87 5.87 Total: -1.00 -33.04 389.56 -9.84 -42.88 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.01 Total: 7.91 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -5.37 Total: -10.38 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.87 Total: -49.27 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.17 Total: -12.71 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.04 -9.84 -42.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096313801.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.362 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds