Wall clock time and date at job start Tue Mar 31 2020 06:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38838 * 120.06536 * 2 1 4 4 N 1.39673 * 120.04529 * 0.02562 * 3 2 1 5 5 S 1.65600 * 120.00019 * 215.72880 * 4 3 2 6 6 O 1.42097 * 104.27515 * 176.04701 * 5 4 3 7 7 O 1.42095 * 104.27901 * 303.91156 * 5 4 3 8 8 C 1.81404 * 104.44692 * 59.98431 * 5 4 3 9 9 C 1.53001 * 109.47176 * 179.97438 * 8 5 4 10 10 C 1.50703 * 109.47142 * 179.97438 * 9 8 5 11 11 H 1.07998 * 120.00052 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99916 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99860 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99849 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47025 * 90.00390 * 14 12 10 16 16 H 1.48500 * 109.47190 * 209.99868 * 14 12 10 17 17 H 1.48492 * 109.47334 * 330.00256 * 14 12 10 18 18 C 1.38932 * 119.91058 * 180.27684 * 3 2 1 19 19 C 1.38162 * 120.03152 * 359.76806 * 18 3 2 20 20 C 1.38175 * 120.12901 * 359.97438 * 19 18 3 21 21 C 1.38574 * 120.06680 * 179.79371 * 2 1 3 22 22 O 1.35899 * 120.01623 * 359.97438 * 21 2 1 23 23 C 1.42894 * 116.99975 * 185.28950 * 22 21 2 24 24 C 1.54898 * 110.75340 * 156.21281 * 23 22 21 25 25 C 1.54268 * 104.31001 * 156.32651 * 24 23 22 26 26 C 1.53878 * 106.60008 * 336.32347 * 25 24 23 27 27 C 1.54262 * 106.59598 * 0.02562 * 26 25 24 28 28 H 1.09008 * 109.46759 * 270.21006 * 1 2 3 29 29 H 1.09002 * 109.47203 * 30.20473 * 1 2 3 30 30 H 1.08996 * 109.47422 * 150.20714 * 1 2 3 31 31 H 0.96997 * 119.99915 * 35.73267 * 4 3 2 32 32 H 1.09013 * 109.46978 * 299.99547 * 8 5 4 33 33 H 1.08993 * 109.47452 * 59.99553 * 8 5 4 34 34 H 1.08996 * 109.47089 * 299.99566 * 9 8 5 35 35 H 1.09003 * 109.47151 * 59.99619 * 9 8 5 36 36 H 0.96998 * 119.99692 * 180.02562 * 13 12 10 37 37 H 1.07995 * 119.98301 * 179.74752 * 18 3 2 38 38 H 1.08001 * 119.93348 * 179.97438 * 19 18 3 39 39 H 1.07996 * 119.94789 * 179.97438 * 20 19 18 40 40 H 1.08999 * 110.81359 * 32.88350 * 23 22 21 41 41 H 1.08994 * 110.48398 * 37.58503 * 24 23 22 42 42 H 1.08995 * 110.48571 * 275.07077 * 24 23 22 43 43 H 1.08997 * 110.03133 * 95.60794 * 25 24 23 44 44 H 1.09004 * 110.02904 * 217.04183 * 25 24 23 45 45 H 1.09003 * 110.02914 * 119.28296 * 26 25 24 46 46 H 1.08992 * 110.03268 * 240.71201 * 26 25 24 47 47 H 1.09006 * 110.48371 * 142.29016 * 27 26 25 48 48 H 1.09004 * 110.48791 * 264.78988 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2025 1.2016 0.0000 4 7 1.5065 2.4125 0.0005 5 16 2.1029 3.7107 -0.8369 6 8 1.1048 4.7114 -0.6894 7 8 3.4099 3.8964 -0.3112 8 6 2.1837 3.1412 -2.5573 9 6 2.7258 4.2657 -3.4419 10 6 2.7935 3.7923 -4.8710 11 1 2.4808 2.7899 -5.1232 12 6 3.2537 4.6394 -5.8567 13 7 3.3123 4.2265 -7.1040 14 14 3.7925 6.3741 -5.4208 15 1 5.2405 6.3744 -5.0908 16 1 3.5482 7.2736 -6.5769 17 1 3.0175 6.8533 -4.2483 18 6 3.5918 1.1978 -0.0058 19 6 4.2800 -0.0002 -0.0068 20 6 3.5893 -1.1969 -0.0014 21 6 2.2012 -1.1993 0.0043 22 8 1.5234 -2.3772 0.0091 23 6 2.2988 -3.5713 0.1307 24 6 1.4418 -4.7258 0.7068 25 6 2.1534 -6.0066 0.2240 26 6 2.9550 -5.6177 -1.0306 27 6 2.7029 -4.1141 -1.2660 28 1 -0.3633 0.0038 1.0278 29 1 -0.3634 0.8881 -0.5170 30 1 -0.3634 -0.8918 -0.5106 31 1 0.6738 2.4931 0.4915 32 1 2.8440 2.2763 -2.6231 33 1 1.1856 2.8627 -2.8951 34 1 2.0652 5.1302 -3.3761 35 1 3.7239 4.5446 -3.1041 36 1 3.6364 4.8223 -7.7974 37 1 4.1340 2.1318 -0.0099 38 1 5.3600 -0.0012 -0.0117 39 1 4.1302 -2.1316 -0.0025 40 1 3.1804 -3.3994 0.7482 41 1 0.4269 -4.6814 0.3118 42 1 1.4285 -4.6843 1.7959 43 1 2.8269 -6.3740 0.9983 44 1 1.4176 -6.7712 -0.0252 45 1 4.0175 -5.7964 -0.8651 46 1 2.6083 -6.1936 -1.8886 47 1 3.6119 -3.6253 -1.6170 48 1 1.8932 -3.9704 -1.9814 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096411177.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:56 Heat of formation + Delta-G solvation = -100.030653 kcal Electronic energy + Delta-G solvation = -29470.615214 eV Core-core repulsion = 25424.290274 eV Total energy + Delta-G solvation = -4046.324939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.149 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.67217 -38.90478 -36.99967 -36.65704 -35.74719 -34.66897 -33.98575 -32.35879 -31.51533 -29.31016 -28.77532 -28.31200 -26.68015 -26.01710 -22.96111 -21.89435 -21.30777 -20.79460 -20.55844 -19.31961 -18.48367 -17.79721 -17.14913 -16.57887 -16.38604 -15.85424 -15.65493 -15.51672 -15.26913 -15.02519 -14.59442 -14.30655 -13.89039 -13.71692 -13.61128 -13.36780 -12.96757 -12.83412 -12.77233 -12.74879 -12.34879 -12.01177 -11.92883 -11.88332 -11.84064 -11.67442 -11.56203 -11.50437 -11.28619 -11.25969 -11.18391 -10.85747 -10.80744 -10.73828 -10.54319 -10.44281 -10.15077 -9.68135 -9.39246 -8.67375 -8.36258 -8.12228 -6.17326 -4.18821 0.43238 1.26543 1.38133 2.68661 3.05755 3.25535 3.33041 3.36641 3.62569 3.93964 4.10858 4.20231 4.34649 4.45487 4.47387 4.64881 4.76842 4.83465 4.94749 4.99770 5.05676 5.08194 5.11311 5.14056 5.21826 5.33078 5.42699 5.46646 5.48550 5.51330 5.56228 5.60566 5.65499 5.68958 5.74599 5.83211 5.87287 5.91956 6.14848 6.19984 6.23784 6.32639 6.52273 6.66903 6.78009 6.89205 6.98029 7.32762 7.52630 8.35652 8.84240 9.41875 10.95055 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.012762 B = 0.002736 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.465553 B =10230.716941 C =11478.827688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.143 4.143 3 C 0.197 3.803 4 N -1.057 6.057 5 S 2.581 3.419 6 O -0.958 6.958 7 O -0.956 6.956 8 C -0.574 4.574 9 C -0.006 4.006 10 C -0.519 4.519 11 H 0.079 0.921 12 C 0.072 3.928 13 N -0.895 5.895 14 Si 0.869 3.131 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.262 1.262 18 C -0.205 4.205 19 C -0.054 4.054 20 C -0.225 4.225 21 C 0.150 3.850 22 O -0.301 6.301 23 C 0.076 3.924 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.148 4.148 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.423 0.577 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.033 0.967 35 H 0.030 0.970 36 H 0.267 0.733 37 H 0.165 0.835 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 -18.912 17.530 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.147 4.147 3 C 0.099 3.901 4 N -0.803 5.803 5 S 2.681 3.319 6 O -0.948 6.948 7 O -0.945 6.945 8 C -0.708 4.708 9 C -0.045 4.045 10 C -0.558 4.558 11 H 0.097 0.903 12 C -0.130 4.130 13 N -0.533 5.533 14 Si 0.695 3.305 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.186 1.186 18 C -0.226 4.226 19 C -0.072 4.072 20 C -0.245 4.245 21 C 0.104 3.896 22 O -0.215 6.215 23 C 0.020 3.980 24 C -0.156 4.156 25 C -0.160 4.160 26 C -0.161 4.161 27 C -0.186 4.186 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.259 0.741 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.182 0.818 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.330 -17.987 17.671 25.322 hybrid contribution 0.080 0.283 -0.208 0.360 sum -2.250 -17.704 17.463 24.969 Atomic orbital electron populations 1.20536 0.90328 1.03194 1.02083 1.18953 0.96519 0.89334 1.09943 1.16985 0.90493 0.84411 0.98162 1.53675 1.36654 1.25237 1.64768 1.06105 0.74338 0.73043 0.78447 1.93577 1.59727 1.55006 1.86507 1.93485 1.39675 1.83878 1.77509 1.30229 1.11222 1.11551 1.17836 1.19427 0.96361 0.91882 0.96835 1.20824 1.44716 1.01668 0.88571 0.90331 1.24977 0.94775 0.98457 0.94837 1.69879 1.46353 1.36675 1.00356 0.86935 0.79964 0.84800 0.78815 1.19632 1.20731 1.18625 1.21959 0.92323 1.01623 1.06719 1.20779 0.99977 0.90932 0.95544 1.21235 0.92857 0.99454 1.10905 1.18462 0.90158 0.85127 0.95864 1.86067 1.35710 1.12070 1.87619 1.23570 0.94572 0.82882 0.96990 1.22382 0.99955 0.92486 1.00734 1.22079 0.99268 0.97063 0.97616 1.22047 1.00389 0.95510 0.98161 1.22947 1.02646 0.95787 0.97240 0.91583 0.91529 0.90790 0.74132 0.85230 0.85217 0.94873 0.95217 0.92354 0.81787 0.85078 0.85351 0.89886 0.90207 0.90872 0.91449 0.91147 0.91487 0.91241 0.90836 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 9.25 36.00 0.33 -0.78 16 2 C -0.14 -1.81 5.91 -104.28 -0.62 -2.43 16 3 C 0.20 2.70 6.10 -83.81 -0.51 2.19 16 4 N -1.06 -14.09 5.09 32.40 0.16 -13.92 16 5 S 2.58 43.52 5.23 -107.50 -0.56 42.95 16 6 O -0.96 -18.38 18.08 -57.54 -1.04 -19.42 16 7 O -0.96 -17.87 15.05 -57.54 -0.87 -18.74 16 8 C -0.57 -10.63 5.83 37.16 0.22 -10.41 16 9 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 10 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 11 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 12 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 13 N -0.89 -26.97 13.96 55.43 0.77 -26.20 16 14 Si 0.87 21.32 27.47 -169.99 -4.67 16.66 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 18 C -0.21 -2.90 9.25 -39.35 -0.36 -3.26 16 19 C -0.05 -0.65 10.03 -39.63 -0.40 -1.04 16 20 C -0.22 -2.53 8.92 -39.39 -0.35 -2.88 16 21 C 0.15 1.82 6.65 -39.25 -0.26 1.56 16 22 O -0.30 -3.32 8.97 -19.42 -0.17 -3.50 16 23 C 0.08 0.64 2.69 -24.56 -0.07 0.57 16 24 C -0.12 -0.79 6.54 -25.07 -0.16 -0.96 16 25 C -0.12 -0.67 6.80 -25.61 -0.17 -0.85 16 26 C -0.12 -0.75 6.80 -25.61 -0.17 -0.93 16 27 C -0.15 -1.18 6.41 -24.90 -0.16 -1.34 16 28 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.07 0.67 7.20 -51.93 -0.37 0.29 16 30 H 0.07 0.78 7.53 -51.93 -0.39 0.39 16 31 H 0.42 4.56 7.99 -34.47 -0.28 4.29 16 32 H 0.13 2.26 8.14 -51.92 -0.42 1.84 16 33 H 0.13 2.20 8.14 -51.93 -0.42 1.77 16 34 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 35 H 0.03 0.68 7.57 -51.93 -0.39 0.29 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.16 2.51 5.17 -52.49 -0.27 2.24 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.13 1.15 5.57 -52.49 -0.29 0.86 16 40 H 0.08 0.64 6.26 -51.93 -0.33 0.31 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.60 7.73 -51.93 -0.40 0.19 16 48 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 392.96 15.07 5.92 5.92 Total: -1.00 -33.94 392.96 -11.02 -44.96 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.33 Total: 4.87 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: -3.23 Total: -33.59 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.94 Total: -40.12 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -2.08 Total: -41.65 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.66 kcal Atomic # 16 Polarization: 43.52 SS G_CDS: -0.56 Total: 42.95 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.94 -11.02 -44.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096411177.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.072 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds