Wall clock time and date at job start Tue Mar 31 2020 05:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46505 * 119.99536 * 2 1 4 4 C 1.50703 * 109.47127 * 275.96052 * 3 2 1 5 5 H 1.08006 * 120.00064 * 3.48019 * 4 3 2 6 6 C 1.37870 * 120.00340 * 183.48207 * 4 3 2 7 7 N 1.31513 * 119.99823 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00343 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.46832 * 60.00048 * 8 6 4 10 10 H 1.48494 * 109.47206 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47046 * 300.00111 * 8 6 4 12 12 S 1.65602 * 120.00525 * 180.02562 * 2 1 3 13 13 O 1.42097 * 106.39862 * 334.21884 * 12 2 1 14 14 O 1.42105 * 106.40103 * 201.29975 * 12 2 1 15 15 N 1.65593 * 107.21752 * 87.75703 * 12 2 1 16 16 C 1.46496 * 120.00148 * 294.07157 * 15 12 2 17 17 H 1.09005 * 110.05793 * 22.94533 * 16 15 12 18 18 C 1.54375 * 110.04794 * 261.46986 * 16 15 12 19 19 C 1.54894 * 104.19921 * 217.08954 * 18 16 15 20 20 C 1.54893 * 102.74841 * 37.96828 * 19 18 16 21 21 C 1.53880 * 110.03439 * 144.36017 * 16 15 12 22 22 H 1.08998 * 110.02980 * 238.61975 * 21 16 15 23 23 C 1.52999 * 110.03059 * 0.02562 * 21 16 15 24 24 C 1.50702 * 109.47201 * 184.30990 * 23 21 16 25 25 C 1.38234 * 119.99948 * 269.72789 * 24 23 21 26 26 C 1.38239 * 119.99719 * 179.76539 * 25 24 23 27 27 C 1.38230 * 119.99883 * 0.50507 * 26 25 24 28 28 C 1.38230 * 120.00269 * 359.74911 * 27 26 25 29 29 C 1.38233 * 120.00169 * 359.97438 * 28 27 26 30 30 H 1.09007 * 109.46976 * 269.99726 * 1 2 3 31 31 H 1.08999 * 109.47671 * 30.00354 * 1 2 3 32 32 H 1.09006 * 109.46909 * 150.00506 * 1 2 3 33 33 H 1.08994 * 109.47471 * 35.95786 * 3 2 1 34 34 H 1.09005 * 109.47114 * 155.96358 * 3 2 1 35 35 H 0.97007 * 119.99954 * 179.97438 * 7 6 4 36 36 H 0.96997 * 120.00284 * 114.07133 * 15 12 2 37 37 H 1.09001 * 110.46184 * 98.42893 * 18 16 15 38 38 H 1.08999 * 110.62112 * 335.83746 * 18 16 15 39 39 H 1.09001 * 110.75426 * 279.66182 * 19 18 16 40 40 H 1.08994 * 110.91261 * 156.35731 * 19 18 16 41 41 H 1.08996 * 110.49051 * 203.38027 * 20 19 18 42 42 H 1.08997 * 110.48577 * 80.73174 * 20 19 18 43 43 H 1.09007 * 109.46905 * 304.31071 * 23 21 16 44 44 H 1.08995 * 109.47306 * 64.30580 * 23 21 16 45 45 H 1.07998 * 119.99970 * 359.97438 * 25 24 23 46 46 H 1.07999 * 119.99505 * 180.22480 * 26 25 24 47 47 H 1.08001 * 119.99574 * 179.72123 * 27 26 25 48 48 H 1.08004 * 120.00553 * 179.97438 * 28 27 26 49 49 H 1.07998 * 120.00200 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3207 1.7777 -1.4132 5 1 1.8480 1.2420 -2.2232 6 6 3.0371 2.9268 -1.6721 7 7 3.6124 3.5793 -0.6857 8 14 3.1906 3.5572 -3.4238 9 1 1.8387 3.8474 -3.9657 10 1 4.0043 4.7993 -3.4334 11 1 3.8501 2.5262 -4.2648 12 16 2.2931 -1.4341 -0.0006 13 8 1.4308 -2.3956 0.5918 14 8 3.5937 -1.1466 0.4947 15 7 2.4846 -1.8888 -1.5814 16 6 1.3146 -2.2437 -2.3884 17 1 0.4185 -1.7864 -1.9689 18 6 1.1523 -3.7780 -2.4390 19 6 0.6602 -4.0607 -3.8802 20 6 1.4658 -3.0408 -4.7228 21 6 1.5145 -1.7760 -3.8407 22 1 0.7159 -1.0911 -4.1257 23 6 2.8729 -1.0874 -3.9873 24 6 3.0112 -0.5417 -5.3852 25 6 3.5659 -1.3240 -6.3808 26 6 3.6883 -0.8251 -7.6642 27 6 3.2656 0.4597 -7.9495 28 6 2.7158 1.2438 -6.9528 29 6 2.5881 0.7430 -5.6707 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5139 32 1 -0.3633 -0.8901 -0.5138 33 1 1.6587 1.9994 0.6034 34 1 3.1919 1.1143 0.4186 35 1 4.1167 4.3877 -0.8679 36 1 3.3715 -1.9202 -1.9730 37 1 0.4105 -4.1070 -1.7113 38 1 2.1074 -4.2712 -2.2585 39 1 -0.4101 -3.8731 -3.9666 40 1 0.8974 -5.0816 -4.1791 41 1 0.9530 -2.8316 -5.6615 42 1 2.4727 -3.4129 -4.9117 43 1 2.9453 -0.2703 -3.2694 44 1 3.6681 -1.8085 -3.7984 45 1 3.9005 -2.3261 -6.1568 46 1 4.1183 -1.4376 -8.4429 47 1 3.3654 0.8510 -8.9512 48 1 2.3859 2.2479 -7.1755 49 1 2.1589 1.3558 -4.8918 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096415040.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:57 Heat of formation + Delta-G solvation = -61.705917 kcal Electronic energy + Delta-G solvation = -31374.234384 eV Core-core repulsion = 27427.289992 eV Total energy + Delta-G solvation = -3946.944392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.71892 -38.32521 -36.57419 -35.49182 -35.18376 -33.19376 -32.98784 -32.49861 -30.76352 -28.98545 -27.82593 -27.01056 -25.10046 -25.03792 -22.53260 -22.26684 -21.35024 -20.66167 -19.53559 -18.84597 -17.42742 -16.72515 -16.54236 -16.38519 -16.03362 -15.42768 -15.24400 -14.91766 -14.86309 -14.49795 -13.96166 -13.50964 -13.45000 -13.31057 -13.11938 -13.07103 -12.76363 -12.52590 -12.24851 -12.17573 -11.93942 -11.84315 -11.67675 -11.46185 -11.19149 -11.13829 -11.03176 -11.00837 -10.93272 -10.87549 -10.70154 -10.58181 -10.52504 -10.49590 -10.28406 -10.05542 -9.75398 -9.11160 -8.75928 -8.52083 -8.44595 -8.05090 -6.12547 -4.19493 1.32870 1.51019 1.55328 3.22991 3.27939 3.30986 3.52977 3.93247 4.17913 4.33750 4.54662 4.65443 4.83951 4.96809 5.01171 5.07741 5.13215 5.21788 5.25452 5.27411 5.39262 5.54197 5.54666 5.59915 5.60392 5.67764 5.70995 5.75674 5.82677 5.94476 5.99663 6.04359 6.05393 6.14356 6.20171 6.23804 6.29238 6.39335 6.46607 6.53138 6.58988 6.60294 6.66659 6.88222 7.17023 7.22192 7.38028 7.47470 7.65813 7.84097 8.14070 8.84830 9.46241 10.95247 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.008224 B = 0.006175 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3403.925263 B = 4533.102744 C = 7205.314844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.996 5.996 3 C 0.244 3.756 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.889 5.889 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.290 1.290 11 H -0.257 1.257 12 S 2.785 3.215 13 O -1.000 7.000 14 O -0.980 6.980 15 N -1.120 6.120 16 C 0.160 3.840 17 H 0.086 0.914 18 C -0.138 4.138 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.087 4.087 22 H 0.081 0.919 23 C -0.087 4.087 24 C -0.068 4.068 25 C -0.118 4.118 26 C -0.125 4.125 27 C -0.130 4.130 28 C -0.122 4.122 29 C -0.108 4.108 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.035 0.965 34 H 0.053 0.947 35 H 0.265 0.735 36 H 0.414 0.586 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.103 0.897 44 H 0.070 0.930 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.893 -11.227 -11.181 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.839 5.839 3 C 0.122 3.878 4 C -0.577 4.577 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.703 3.297 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.182 1.182 12 S 2.793 3.207 13 O -0.983 6.983 14 O -0.964 6.964 15 N -0.879 5.879 16 C 0.052 3.948 17 H 0.104 0.896 18 C -0.177 4.177 19 C -0.162 4.162 20 C -0.155 4.155 21 C -0.107 4.107 22 H 0.099 0.901 23 C -0.124 4.124 24 C -0.069 4.069 25 C -0.136 4.136 26 C -0.143 4.143 27 C -0.148 4.148 28 C -0.140 4.140 29 C -0.126 4.126 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.250 0.750 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.121 0.879 44 H 0.088 0.912 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.133 0.867 48 H 0.135 0.865 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.648 -11.511 -10.243 16.094 hybrid contribution 0.380 0.955 -1.569 1.876 sum -4.269 -10.555 -11.813 16.407 Atomic orbital electron populations 1.21284 0.80361 1.01881 1.00717 1.57609 1.14011 1.23471 1.88796 1.19215 0.92279 0.78747 0.97527 1.21494 1.33264 1.09617 0.93348 0.91786 1.24931 0.95198 0.96578 0.96961 1.69917 1.33606 1.17878 1.31253 0.86992 0.78396 0.78949 0.85405 1.20167 1.21559 1.18219 1.01740 0.73028 0.72808 0.73166 1.93544 1.68547 1.60677 1.75567 1.93593 1.39536 1.85004 1.78291 1.56242 1.14678 1.84453 1.32564 1.21355 0.87582 0.94427 0.91428 0.89645 1.22902 1.02132 0.95811 0.96900 1.22469 0.99799 0.98911 0.95054 1.22468 1.00346 0.94701 0.97944 1.21957 0.97968 0.96871 0.93860 0.90087 1.20856 0.96542 1.01416 0.93580 1.19927 0.97300 0.93867 0.95760 1.21035 1.00233 0.99479 0.92875 1.21047 1.00764 0.95883 0.96648 1.21045 1.00130 0.94700 0.98938 1.21136 0.99803 0.99665 0.93387 1.21286 0.99252 0.95351 0.96716 0.93709 0.90767 0.93063 0.94745 0.92865 0.92560 0.75035 0.90889 0.90859 0.91502 0.91671 0.91745 0.91450 0.87873 0.91162 0.86399 0.86613 0.86650 0.86546 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 10.16 59.85 0.61 2.32 16 2 N -1.00 -19.86 3.23 -123.04 -0.40 -20.26 16 3 C 0.24 5.91 5.41 -5.19 -0.03 5.89 16 4 C -0.54 -13.38 9.29 -34.44 -0.32 -13.70 16 5 H 0.06 1.49 6.87 -52.48 -0.36 1.13 16 6 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 8 Si 0.88 19.74 27.68 -169.99 -4.70 15.04 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.26 -5.52 5.88 56.52 0.33 -5.18 16 12 S 2.79 53.71 6.02 -107.50 -0.65 53.06 16 13 O -1.00 -19.94 17.03 -57.17 -0.97 -20.91 16 14 O -0.98 -22.55 16.64 -57.17 -0.95 -23.51 16 15 N -1.12 -17.34 4.63 -3.89 -0.02 -17.36 16 16 C 0.16 2.12 3.44 -66.75 -0.23 1.89 16 17 H 0.09 1.13 5.94 -51.93 -0.31 0.83 16 18 C -0.14 -1.60 6.54 -25.01 -0.16 -1.77 16 19 C -0.12 -1.19 6.91 -24.73 -0.17 -1.36 16 20 C -0.12 -1.20 5.41 -25.07 -0.14 -1.33 16 21 C -0.09 -1.07 2.92 -89.50 -0.26 -1.33 16 22 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 23 C -0.09 -1.22 3.43 -27.88 -0.10 -1.31 16 24 C -0.07 -0.99 4.89 -104.62 -0.51 -1.50 16 25 C -0.12 -1.47 8.88 -39.58 -0.35 -1.83 16 26 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 27 C -0.13 -1.61 10.05 -39.59 -0.40 -2.01 16 28 C -0.12 -1.74 10.05 -39.59 -0.40 -2.13 16 29 C -0.11 -1.72 8.66 -39.58 -0.34 -2.07 16 30 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 32 H 0.05 0.72 5.97 -51.93 -0.31 0.41 16 33 H 0.03 0.87 8.11 -51.93 -0.42 0.45 16 34 H 0.05 1.44 6.88 -51.93 -0.36 1.08 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.41 5.99 6.54 -34.47 -0.23 5.76 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.66 6.87 -51.93 -0.36 0.31 16 43 H 0.10 1.76 6.47 -51.92 -0.34 1.43 16 44 H 0.07 0.89 6.96 -51.93 -0.36 0.53 16 45 H 0.12 1.24 7.34 -52.49 -0.39 0.85 16 46 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 47 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 48 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 49 H 0.12 2.17 5.84 -52.49 -0.31 1.86 16 LS Contribution 391.40 15.07 5.90 5.90 Total: -1.00 -31.15 391.40 -11.93 -43.08 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -7.58 Total: 9.77 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -3.29 Total: -20.46 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.32 Total: -61.98 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -1.93 Total: -44.42 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.70 Total: 15.04 kcal Atomic # 16 Polarization: 53.71 SS G_CDS: -0.65 Total: 53.06 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.15 -11.93 -43.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096415040.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.625 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds