Wall clock time and date at job start Tue Mar 31 2020 05:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46493 * 120.00108 * 2 1 4 4 C 1.50706 * 109.47128 * 274.99903 * 3 2 1 5 5 H 1.08005 * 119.99758 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00102 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00217 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47483 * 269.99808 * 8 6 4 10 10 H 1.48499 * 109.47134 * 30.00322 * 8 6 4 11 11 H 1.48507 * 109.46904 * 150.00145 * 8 6 4 12 12 S 1.65601 * 119.99800 * 179.97438 * 2 1 3 13 13 O 1.42102 * 106.40315 * 23.54410 * 12 2 1 14 14 O 1.42106 * 106.39789 * 156.46091 * 12 2 1 15 15 N 1.65595 * 107.22339 * 269.99884 * 12 2 1 16 16 C 1.46498 * 119.99939 * 64.99896 * 15 12 2 17 17 H 1.09003 * 110.01603 * 335.70915 * 16 15 12 18 18 C 1.54270 * 110.03224 * 97.09419 * 16 15 12 19 19 C 1.55013 * 104.13764 * 95.68878 * 18 16 15 20 20 C 1.54891 * 102.75269 * 37.94785 * 19 18 16 21 21 C 1.53874 * 110.03787 * 214.31215 * 16 15 12 22 22 H 1.09001 * 110.02462 * 0.02562 * 21 16 15 23 23 C 1.53000 * 110.03308 * 121.43043 * 21 16 15 24 24 C 1.50702 * 109.47264 * 185.00297 * 23 21 16 25 25 C 1.38236 * 119.99899 * 269.72957 * 24 23 21 26 26 C 1.38230 * 119.99507 * 179.74227 * 25 24 23 27 27 C 1.38233 * 120.00527 * 0.53008 * 26 25 24 28 28 C 1.38237 * 119.99897 * 359.74038 * 27 26 25 29 29 C 1.38236 * 119.99847 * 89.99773 * 24 23 21 30 30 H 1.09002 * 109.47261 * 90.00536 * 1 2 3 31 31 H 1.09004 * 109.46860 * 209.99890 * 1 2 3 32 32 H 1.08999 * 109.46818 * 330.00058 * 1 2 3 33 33 H 1.09001 * 109.47786 * 155.00176 * 3 2 1 34 34 H 1.09006 * 109.47401 * 34.99761 * 3 2 1 35 35 H 0.97001 * 119.99646 * 359.97438 * 7 6 4 36 36 H 0.97000 * 120.00397 * 245.00413 * 15 12 2 37 37 H 1.09001 * 110.48825 * 214.36074 * 18 16 15 38 38 H 1.09000 * 110.48401 * 336.99617 * 18 16 15 39 39 H 1.08999 * 110.76212 * 279.63749 * 19 18 16 40 40 H 1.08987 * 110.90179 * 156.33736 * 19 18 16 41 41 H 1.08995 * 110.48728 * 203.36303 * 20 19 18 42 42 H 1.09007 * 110.48036 * 80.73070 * 20 19 18 43 43 H 1.09003 * 109.47231 * 305.00080 * 23 21 16 44 44 H 1.08999 * 109.47123 * 65.00258 * 23 21 16 45 45 H 1.07999 * 119.99674 * 359.97438 * 25 24 23 46 46 H 1.08003 * 119.99408 * 180.29156 * 26 25 24 47 47 H 1.07997 * 120.00630 * 179.76874 * 27 26 25 48 48 H 1.08000 * 120.00512 * 180.02562 * 28 27 26 49 49 H 1.08004 * 119.99975 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7656 -1.4155 5 1 1.9289 1.1933 -2.2333 6 6 2.9998 2.9507 -1.6664 7 7 3.5025 3.6474 -0.6706 8 14 3.1788 3.5663 -3.4210 9 1 4.4345 3.0326 -4.0072 10 1 2.0206 3.1050 -4.2279 11 1 3.2235 5.0507 -3.4226 12 16 2.2930 -1.4342 0.0006 13 8 1.4113 -2.4068 -0.5435 14 8 3.5759 -1.1570 -0.5439 15 7 2.5381 -1.8581 1.5825 16 6 1.3947 -2.1769 2.4411 17 1 0.4951 -1.6944 2.0588 18 6 1.1896 -3.7046 2.5023 19 6 1.9329 -4.1350 3.7927 20 6 1.6250 -2.9724 4.7687 21 6 1.6710 -1.7113 3.8815 22 1 2.6557 -1.2478 3.9415 23 6 0.5959 -0.7179 4.3265 24 6 0.9445 -0.1773 5.6894 25 6 0.4866 -0.8186 6.8251 26 6 0.8109 -0.3258 8.0752 27 6 1.5839 0.8144 8.1895 28 6 2.0372 1.4589 7.0537 29 6 1.7176 0.9629 5.8036 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 3.1858 1.1177 0.4343 34 1 1.6501 2.0043 0.5894 35 1 3.4099 3.3275 0.2404 36 1 3.4388 -1.8953 1.9407 37 1 0.1288 -3.9445 2.5747 38 1 1.6313 -4.1841 1.6288 39 1 3.0050 -4.2144 3.6128 40 1 1.5361 -5.0755 4.1747 41 1 2.3842 -2.9180 5.5488 42 1 0.6344 -3.0946 5.2070 43 1 0.5426 0.1040 3.6124 44 1 -0.3690 -1.2229 4.3719 45 1 -0.1214 -1.7068 6.7357 46 1 0.4570 -0.8296 8.9626 47 1 1.8342 1.2016 9.1662 48 1 2.6415 2.3496 7.1429 49 1 2.0714 1.4666 4.9161 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096415041.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:00 Heat of formation + Delta-G solvation = -71.358536 kcal Electronic energy + Delta-G solvation = -30228.204811 eV Core-core repulsion = 26280.841850 eV Total energy + Delta-G solvation = -3947.362961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.89989 -38.55024 -36.62246 -35.68868 -35.21394 -33.76316 -32.81827 -32.60998 -31.02326 -29.28685 -27.64886 -27.39356 -25.04318 -24.83440 -22.76384 -22.47960 -21.45427 -20.82001 -20.16624 -18.88896 -17.52369 -16.98834 -16.83582 -16.64492 -16.32841 -15.44183 -15.32920 -15.07232 -14.97747 -14.41749 -13.84995 -13.79361 -13.69657 -13.49393 -13.31945 -13.30103 -12.81852 -12.70921 -12.46353 -12.33169 -12.19344 -12.02691 -11.67688 -11.49866 -11.30892 -11.28422 -11.20485 -11.14516 -11.08851 -11.04388 -10.80630 -10.75373 -10.72411 -10.59860 -10.48217 -10.09581 -9.39070 -9.31567 -9.05359 -8.79481 -8.38950 -7.97145 -6.40430 -4.11870 1.14707 1.22866 1.26630 3.43374 3.46219 3.49316 3.64053 3.64603 4.07208 4.30000 4.45405 4.54002 4.60482 4.71265 4.76892 4.86213 4.95023 4.98903 5.12164 5.14656 5.25035 5.32009 5.33921 5.36864 5.40236 5.44829 5.50909 5.52987 5.59899 5.73777 5.74784 5.81723 5.91141 5.91944 5.95624 5.97792 6.14097 6.15375 6.22080 6.32806 6.37441 6.38773 6.40122 6.53180 6.84566 6.87631 7.06713 7.20978 7.45669 7.99985 8.43861 8.79019 9.56856 10.97672 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.003522 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.060787 B = 7948.468051 C = 9946.910792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.993 5.993 3 C 0.250 3.750 4 C -0.608 4.608 5 H 0.054 0.946 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 1.071 2.929 9 H -0.286 1.286 10 H -0.288 1.288 11 H -0.284 1.284 12 S 2.781 3.219 13 O -0.994 6.994 14 O -0.966 6.966 15 N -1.127 6.127 16 C 0.155 3.845 17 H 0.085 0.915 18 C -0.139 4.139 19 C -0.125 4.125 20 C -0.116 4.116 21 C -0.090 4.090 22 H 0.085 0.915 23 C -0.079 4.079 24 C -0.074 4.074 25 C -0.117 4.117 26 C -0.122 4.122 27 C -0.128 4.128 28 C -0.118 4.118 29 C -0.115 4.115 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.026 0.974 34 H 0.024 0.976 35 H 0.266 0.734 36 H 0.412 0.588 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.121 0.879 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.956 -11.383 18.017 22.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.835 5.835 3 C 0.127 3.873 4 C -0.647 4.647 5 H 0.072 0.928 6 C -0.183 4.183 7 N -0.546 5.546 8 Si 0.899 3.101 9 H -0.212 1.212 10 H -0.214 1.214 11 H -0.209 1.209 12 S 2.788 3.212 13 O -0.977 6.977 14 O -0.949 6.949 15 N -0.885 5.885 16 C 0.047 3.953 17 H 0.103 0.897 18 C -0.178 4.178 19 C -0.162 4.162 20 C -0.154 4.154 21 C -0.110 4.110 22 H 0.103 0.897 23 C -0.117 4.117 24 C -0.074 4.074 25 C -0.135 4.135 26 C -0.140 4.140 27 C -0.146 4.146 28 C -0.136 4.136 29 C -0.133 4.133 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.245 0.755 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.259 -10.616 16.237 20.384 hybrid contribution -0.323 -0.928 1.471 1.769 sum -6.582 -11.544 17.708 22.139 Atomic orbital electron populations 1.21270 0.80043 1.00930 1.01731 1.57489 1.14150 1.23020 1.88890 1.19098 0.90403 0.79544 0.98243 1.22332 1.40204 1.09497 0.92673 0.92753 1.25799 0.92984 0.93598 1.05929 1.70801 1.43277 1.40201 1.00347 0.83513 0.76481 0.76118 0.73953 1.21216 1.21409 1.20925 1.01996 0.73364 0.72862 0.72943 1.93545 1.67529 1.59851 1.76781 1.93643 1.40730 1.84827 1.75723 1.56415 1.14319 1.85607 1.32117 1.21381 0.88115 0.95258 0.90515 0.89677 1.22894 1.00937 0.95314 0.98658 1.22519 1.00531 0.97885 0.95289 1.22455 1.01757 0.93752 0.97431 1.22104 0.99854 0.95693 0.93372 0.89704 1.20782 0.98481 0.98968 0.93421 1.19867 0.97322 0.95141 0.95094 1.21044 1.00540 0.99828 0.92070 1.21111 0.98856 0.96706 0.97358 1.21126 0.98824 0.96243 0.98451 1.21185 0.99850 0.99930 0.92589 1.21188 0.98105 0.96119 0.97880 0.92937 0.92949 0.91534 0.95591 0.95812 0.92355 0.75535 0.90743 0.90431 0.91517 0.91592 0.91614 0.91315 0.90264 0.90624 0.86246 0.86390 0.86420 0.86114 0.85770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.80 10.14 59.85 0.61 2.40 16 2 N -0.99 -20.23 3.23 -123.05 -0.40 -20.62 16 3 C 0.25 6.13 4.43 -5.19 -0.02 6.11 16 4 C -0.61 -17.27 9.38 -34.44 -0.32 -17.59 16 5 H 0.05 1.58 7.81 -52.48 -0.41 1.17 16 6 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 7 N -0.91 -27.17 13.65 55.43 0.76 -26.42 16 8 Si 1.07 25.75 29.90 -169.99 -5.08 20.67 16 9 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 S 2.78 54.44 5.97 -107.50 -0.64 53.79 16 13 O -0.99 -20.42 16.97 -57.17 -0.97 -21.39 16 14 O -0.97 -23.22 17.11 -57.17 -0.98 -24.19 16 15 N -1.13 -16.09 5.46 -3.94 -0.02 -16.11 16 16 C 0.16 1.83 3.12 -66.81 -0.21 1.62 16 17 H 0.09 1.00 5.68 -51.93 -0.30 0.71 16 18 C -0.14 -1.49 6.55 -25.00 -0.16 -1.65 16 19 C -0.12 -1.10 6.91 -24.67 -0.17 -1.28 16 20 C -0.12 -0.98 5.43 -25.08 -0.14 -1.12 16 21 C -0.09 -0.90 2.68 -89.51 -0.24 -1.14 16 22 H 0.08 0.92 7.74 -51.93 -0.40 0.52 16 23 C -0.08 -0.77 4.49 -27.88 -0.13 -0.89 16 24 C -0.07 -0.75 4.90 -104.62 -0.51 -1.27 16 25 C -0.12 -1.06 8.92 -39.59 -0.35 -1.41 16 26 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 27 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 28 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 29 C -0.11 -1.26 9.70 -39.58 -0.38 -1.64 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.72 6.16 -51.93 -0.32 0.40 16 32 H 0.07 1.02 7.94 -51.93 -0.41 0.61 16 33 H 0.03 0.67 7.48 -51.93 -0.39 0.28 16 34 H 0.02 0.58 7.83 -51.93 -0.41 0.17 16 35 H 0.27 7.77 7.22 -40.82 -0.29 7.48 16 36 H 0.41 5.25 8.65 -34.47 -0.30 4.95 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.51 8.14 -51.94 -0.42 0.08 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.52 6.93 -51.92 -0.36 0.16 16 43 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 44 H 0.08 0.63 7.95 -51.93 -0.41 0.22 16 45 H 0.12 0.88 7.38 -52.49 -0.39 0.49 16 46 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 47 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 48 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 49 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 LS Contribution 403.70 15.07 6.08 6.08 Total: -1.00 -34.87 403.70 -12.40 -47.27 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.83 Total: 2.89 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -3.32 Total: -21.97 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: 0.34 Total: -63.15 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -1.95 Total: -45.59 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.67 kcal Atomic # 16 Polarization: 54.44 SS G_CDS: -0.64 Total: 53.79 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.87 -12.40 -47.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096415041.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.087 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds