Wall clock time and date at job start Tue Mar 31 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38262 * 119.99715 * 2 1 4 4 C 1.38212 * 120.00042 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00074 * 359.97438 * 4 3 2 6 6 C 1.38219 * 119.99727 * 359.74667 * 5 4 3 7 7 C 1.38213 * 120.00286 * 179.97438 * 2 1 3 8 8 C 1.50695 * 120.00065 * 0.02562 * 7 2 1 9 9 H 1.08999 * 109.55426 * 35.12254 * 8 7 2 10 10 C 1.53296 * 109.51059 * 274.99886 * 8 7 2 11 11 N 1.47150 * 108.38334 * 187.77391 * 10 8 7 12 12 S 1.65606 * 120.98372 * 230.50928 * 11 10 8 13 13 O 1.42100 * 104.27450 * 333.93245 * 12 11 10 14 14 O 1.42093 * 104.28025 * 206.07160 * 12 11 10 15 15 C 1.81403 * 104.44724 * 89.99903 * 12 11 10 16 16 C 1.53001 * 109.47153 * 180.02562 * 15 12 11 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.47154 * 118.03905 * 50.78336 * 11 10 8 26 26 H 1.09000 * 109.68316 * 189.49221 * 25 11 10 27 27 C 1.52997 * 109.67799 * 68.93589 * 25 11 10 28 28 C 1.53718 * 108.16104 * 309.15976 * 25 11 10 29 29 O 1.42955 * 109.51476 * 155.24869 * 8 7 2 30 30 H 1.08997 * 109.47523 * 270.02088 * 1 2 3 31 31 H 1.09002 * 109.47670 * 30.02773 * 1 2 3 32 32 H 1.09008 * 109.47094 * 150.02181 * 1 2 3 33 33 H 1.08001 * 120.00070 * 359.97438 * 3 2 1 34 34 H 1.08004 * 120.00193 * 179.97438 * 4 3 2 35 35 H 1.07994 * 120.00165 * 179.97438 * 5 4 3 36 36 H 1.08001 * 120.00119 * 180.27544 * 6 5 4 37 37 H 1.08993 * 109.68363 * 68.04989 * 10 8 7 38 38 H 1.08997 * 109.67974 * 307.49273 * 10 8 7 39 39 H 1.09002 * 109.46959 * 60.00458 * 15 12 11 40 40 H 1.08998 * 109.47334 * 299.99936 * 15 12 11 41 41 H 1.09007 * 109.46922 * 59.99828 * 16 15 12 42 42 H 1.09003 * 109.46836 * 300.00583 * 16 15 12 43 43 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.47416 * 60.00388 * 27 25 11 45 45 H 1.09008 * 109.47224 * 180.02562 * 27 25 11 46 46 H 1.08995 * 109.47286 * 299.99971 * 27 25 11 47 47 H 1.08998 * 109.65867 * 292.57078 * 28 25 11 48 48 H 1.08992 * 109.48588 * 172.39579 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0016 6 6 3.5806 -1.1968 0.0074 7 6 2.1981 -1.1969 0.0005 8 6 1.4447 -2.5020 0.0005 9 1 0.5349 -2.3981 -0.5908 10 6 1.0791 -2.8822 1.4399 11 7 0.5145 -4.2410 1.4319 12 16 -0.9271 -4.5696 2.1779 13 8 -1.0306 -3.5794 3.1918 14 8 -0.8449 -5.9494 2.5070 15 6 -2.1756 -4.2955 0.8907 16 6 -3.5675 -4.5695 1.4637 17 6 -4.6046 -4.3424 0.3943 18 1 -4.3014 -4.0339 -0.5953 19 6 -5.9408 -4.5284 0.6791 20 7 -6.3101 -4.9046 1.8840 21 14 -7.2264 -4.2462 -0.6464 22 1 -8.5775 -4.5123 -0.0902 23 1 -7.1523 -2.8395 -1.1163 24 1 -6.9716 -5.1631 -1.7864 25 6 1.2715 -5.3006 0.7467 26 1 0.6613 -6.2010 0.6765 27 6 2.5525 -5.6049 1.5261 28 6 1.6251 -4.8015 -0.6635 29 8 2.2659 -3.5275 -0.5631 30 1 -0.3634 0.0004 1.0276 31 1 -0.3634 0.8897 -0.5143 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6582 2.1327 -0.0004 34 1 4.1203 2.1328 0.0001 35 1 5.3516 0.0002 0.0016 36 1 4.1207 -2.1321 0.0128 37 1 0.3414 -2.1804 1.8289 38 1 1.9726 -2.8597 2.0637 39 1 -1.9881 -4.9679 0.0536 40 1 -2.1217 -3.2627 0.5463 41 1 -3.7548 -3.8968 2.3007 42 1 -3.6216 -5.6021 1.8085 43 1 -7.2502 -5.0351 2.0845 44 1 2.2956 -5.9370 2.5320 45 1 3.1107 -6.3897 1.0155 46 1 3.1640 -4.7046 1.5858 47 1 0.7160 -4.7059 -1.2573 48 1 2.2994 -5.5116 -1.1421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096428534.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:28 Heat of formation + Delta-G solvation = -97.831210 kcal Electronic energy + Delta-G solvation = -30543.955068 eV Core-core repulsion = 26497.725503 eV Total energy + Delta-G solvation = -4046.229564 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.40666 -38.88599 -36.75261 -35.57898 -35.14061 -33.94119 -33.75168 -32.49307 -31.21579 -30.78544 -27.96457 -26.91904 -26.27669 -25.64203 -24.18675 -22.29651 -21.75250 -21.08698 -20.16760 -18.57617 -17.81642 -16.86428 -16.76592 -16.64768 -16.01143 -15.68128 -15.42525 -15.24856 -14.93194 -14.62803 -14.57114 -14.38941 -14.02524 -13.60837 -13.46343 -13.33774 -13.19170 -12.67904 -12.56743 -12.44917 -12.37544 -12.17599 -12.00275 -11.81769 -11.69960 -11.65980 -11.54772 -11.27817 -11.22088 -11.10732 -11.08918 -11.01718 -10.57244 -10.44828 -10.43423 -10.27014 -9.75766 -9.33829 -9.01562 -8.84834 -8.59841 -8.54014 -6.16194 -4.22262 0.63824 1.14156 1.25232 2.86802 3.24194 3.29415 3.30883 3.43578 3.61153 4.22482 4.34158 4.37694 4.51549 4.58036 4.68083 4.69381 4.81227 4.87151 4.92421 5.02418 5.06089 5.10429 5.18809 5.22006 5.36984 5.39545 5.42862 5.51319 5.55299 5.57392 5.59920 5.65155 5.68509 5.75208 5.80154 5.89473 6.04067 6.07840 6.19945 6.29103 6.36269 6.40908 6.46068 6.52794 6.83782 6.99801 7.24223 7.30145 7.76113 8.12661 8.80769 9.42702 10.94749 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.011242 B = 0.003363 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.113252 B = 8322.726906 C = 9737.073381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.070 4.070 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.132 4.132 6 C -0.087 4.087 7 C -0.084 4.084 8 C 0.117 3.883 9 H 0.079 0.921 10 C 0.102 3.898 11 N -1.005 6.005 12 S 2.586 3.414 13 O -0.961 6.961 14 O -0.960 6.960 15 C -0.589 4.589 16 C 0.029 3.971 17 C -0.522 4.522 18 H 0.061 0.939 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.285 1.285 23 H -0.275 1.275 24 H -0.275 1.275 25 C 0.113 3.887 26 H 0.107 0.893 27 C -0.154 4.154 28 C 0.054 3.946 29 O -0.368 6.368 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.266 0.734 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.097 7.401 -5.794 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.071 4.071 3 C -0.140 4.140 4 C -0.133 4.133 5 C -0.150 4.150 6 C -0.105 4.105 7 C -0.085 4.085 8 C 0.058 3.942 9 H 0.096 0.904 10 C -0.023 4.023 11 N -0.841 5.841 12 S 2.686 3.314 13 O -0.951 6.951 14 O -0.950 6.950 15 C -0.723 4.723 16 C -0.010 4.010 17 C -0.561 4.561 18 H 0.079 0.921 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.210 1.210 23 H -0.200 1.200 24 H -0.201 1.201 25 C 0.007 3.993 26 H 0.125 0.875 27 C -0.213 4.213 28 C -0.025 4.025 29 O -0.287 6.287 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.147 0.853 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 21.053 7.103 -4.788 22.729 hybrid contribution -1.126 0.270 -1.226 1.686 sum 19.928 7.373 -6.014 22.083 Atomic orbital electron populations 1.21007 0.90883 1.03443 1.03312 1.19721 0.96194 0.92282 0.98858 1.20983 0.94241 0.97302 1.01496 1.21153 0.94318 0.98059 0.99777 1.21136 0.99829 0.92492 1.01518 1.20988 0.93415 0.98384 0.97693 1.19327 0.93998 0.92487 1.02667 1.21257 0.93253 0.85573 0.94118 0.90363 1.21944 1.00930 0.83023 0.96447 1.58281 1.38176 1.14695 1.72973 1.05895 0.74246 0.74331 0.76959 1.93541 1.85700 1.61349 1.54530 1.93538 1.85418 1.33404 1.82687 1.30517 1.15107 1.10257 1.16384 1.18955 0.86146 0.98399 0.97455 1.20944 0.90652 1.47596 0.96906 0.92096 1.25067 0.98756 0.94854 0.95734 1.69944 1.17170 1.45879 1.19778 0.86532 0.80378 0.78812 0.81572 1.21036 1.20045 1.20062 1.21723 0.94733 0.90416 0.92453 0.87477 1.21994 0.96648 1.01934 1.00703 1.23108 0.98788 0.85321 0.95245 1.87895 1.40015 1.18223 1.82533 0.90187 0.91026 0.91007 0.85881 0.86203 0.86170 0.85279 0.88222 0.90324 0.86266 0.86354 0.94868 0.94879 0.92420 0.91995 0.91560 0.91790 0.92174 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.46 36.00 0.34 -0.93 16 2 C -0.07 -0.74 5.88 -104.62 -0.62 -1.35 16 3 C -0.12 -1.15 9.70 -39.58 -0.38 -1.53 16 4 C -0.11 -1.01 10.05 -39.58 -0.40 -1.41 16 5 C -0.13 -1.20 10.05 -39.58 -0.40 -1.59 16 6 C -0.09 -0.90 9.35 -39.58 -0.37 -1.27 16 7 C -0.08 -0.93 5.07 -104.63 -0.53 -1.46 16 8 C 0.12 1.32 2.49 -27.73 -0.07 1.25 16 9 H 0.08 0.86 6.17 -51.93 -0.32 0.54 16 10 C 0.10 1.28 5.37 -3.53 -0.02 1.26 16 11 N -1.01 -13.79 2.96 -105.80 -0.31 -14.11 16 12 S 2.59 46.38 5.42 -107.50 -0.58 45.80 16 13 O -0.96 -19.75 16.81 -57.54 -0.97 -20.72 16 14 O -0.96 -19.61 16.80 -57.54 -0.97 -20.57 16 15 C -0.59 -10.99 6.12 37.16 0.23 -10.76 16 16 C 0.03 0.74 4.98 -27.89 -0.14 0.60 16 17 C -0.52 -14.14 9.11 -34.44 -0.31 -14.46 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 21 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 C 0.11 1.31 3.11 -67.20 -0.21 1.10 16 26 H 0.11 1.25 7.22 -51.93 -0.37 0.87 16 27 C -0.15 -1.63 9.25 37.16 0.34 -1.29 16 28 C 0.05 0.52 6.38 37.53 0.24 0.76 16 29 O -0.37 -4.08 8.85 -35.23 -0.31 -4.39 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.07 0.70 6.03 -51.92 -0.31 0.39 16 33 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.13 1.27 7.35 -52.49 -0.39 0.89 16 37 H 0.10 1.27 7.08 -51.93 -0.37 0.90 16 38 H 0.08 0.95 7.64 -51.93 -0.40 0.56 16 39 H 0.12 1.98 8.14 -51.92 -0.42 1.55 16 40 H 0.12 1.95 8.14 -51.93 -0.42 1.53 16 41 H 0.03 0.88 8.14 -51.92 -0.42 0.46 16 42 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 46 H 0.06 0.67 7.21 -51.93 -0.37 0.30 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 397.12 15.07 5.98 5.98 Total: -1.00 -34.13 397.12 -11.40 -45.53 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.57 Total: 1.55 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -2.39 Total: -29.53 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.42 Total: -39.54 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -2.25 Total: -45.68 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 46.38 SS G_CDS: -0.58 Total: 45.80 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.13 -11.40 -45.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096428534.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.304 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds