Wall clock time and date at job start Tue Mar 31 2020 06:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38255 * 120.00254 * 2 1 4 4 C 1.38214 * 120.00189 * 180.27568 * 3 2 1 5 5 C 1.38258 * 120.00038 * 359.75062 * 4 3 2 6 6 C 1.38219 * 119.99971 * 0.02562 * 5 4 3 7 7 C 1.38216 * 120.00094 * 179.77545 * 2 1 3 8 8 C 1.50707 * 119.99989 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.54946 * 324.60294 * 8 7 2 10 10 C 1.53291 * 109.51001 * 84.72744 * 8 7 2 11 11 N 1.47155 * 108.37957 * 172.22723 * 10 8 7 12 12 S 1.65597 * 120.98047 * 129.44466 * 11 10 8 13 13 O 1.42105 * 104.27798 * 220.04462 * 12 11 10 14 14 O 1.42095 * 104.27814 * 347.90667 * 12 11 10 15 15 C 1.81403 * 104.45172 * 103.97858 * 12 11 10 16 16 C 1.53000 * 109.47421 * 180.02562 * 15 12 11 17 17 C 1.50697 * 109.47112 * 179.97438 * 16 15 12 18 18 H 1.08005 * 120.00120 * 0.02562 * 17 16 15 19 19 C 1.37884 * 120.00024 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99829 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99991 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47154 * 90.00370 * 21 19 17 23 23 H 1.48500 * 109.47445 * 210.00131 * 21 19 17 24 24 H 1.48497 * 109.47573 * 330.00683 * 21 19 17 25 25 C 1.47153 * 118.03944 * 309.46073 * 11 10 8 26 26 H 1.08992 * 109.68550 * 290.78251 * 25 11 10 27 27 C 1.52994 * 109.68508 * 170.25709 * 25 11 10 28 28 C 1.53305 * 108.38057 * 50.53761 * 25 11 10 29 29 O 1.42961 * 109.22279 * 307.70015 * 28 25 11 30 30 H 1.09000 * 109.46861 * 270.22832 * 1 2 3 31 31 H 1.08991 * 109.47328 * 30.22834 * 1 2 3 32 32 H 1.08999 * 109.47055 * 150.22832 * 1 2 3 33 33 H 1.08004 * 119.99801 * 0.02562 * 3 2 1 34 34 H 1.07998 * 119.99854 * 179.72769 * 4 3 2 35 35 H 1.08000 * 120.00023 * 179.97438 * 5 4 3 36 36 H 1.07989 * 119.99790 * 179.97438 * 6 5 4 37 37 H 1.08996 * 109.68298 * 52.50691 * 10 8 7 38 38 H 1.08998 * 109.71368 * 291.96322 * 10 8 7 39 39 H 1.09002 * 109.46819 * 299.99921 * 15 12 11 40 40 H 1.09004 * 109.47346 * 59.99379 * 15 12 11 41 41 H 1.09002 * 109.46947 * 299.99705 * 16 15 12 42 42 H 1.08995 * 109.47379 * 59.99525 * 16 15 12 43 43 H 0.96995 * 120.00274 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.46770 * 52.38168 * 27 25 11 45 45 H 1.09003 * 109.47106 * 172.37782 * 27 25 11 46 46 H 1.08999 * 109.47717 * 292.38277 * 27 25 11 47 47 H 1.09001 * 109.50929 * 67.62221 * 28 25 11 48 48 H 1.08993 * 109.51037 * 187.77410 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0058 5 6 4.2717 -0.0001 -0.0063 6 6 3.5806 -1.1971 -0.0016 7 6 2.1981 -1.1970 0.0047 8 6 1.4446 -2.5021 0.0104 9 1 0.5373 -2.3969 0.6053 10 6 1.0731 -2.8851 -1.4267 11 7 0.5083 -4.2439 -1.4135 12 16 -0.9368 -4.5735 -2.1519 13 8 -1.5895 -5.4679 -1.2611 14 8 -1.4846 -3.2938 -2.4371 15 6 -0.4774 -5.4256 -3.6860 16 6 -1.7423 -5.7866 -4.4674 17 6 -1.3605 -6.4939 -5.7422 18 1 -0.3198 -6.6689 -5.9718 19 6 -2.3399 -6.9186 -6.6149 20 7 -3.6072 -6.7059 -6.3350 21 14 -1.8667 -7.7947 -8.1953 22 1 -1.7999 -9.2578 -7.9494 23 1 -2.8837 -7.5144 -9.2404 24 1 -0.5401 -7.3088 -8.6526 25 6 1.2655 -5.3010 -0.7246 26 1 2.1754 -5.5234 -1.2818 27 6 0.4067 -6.5625 -0.6156 28 6 1.6277 -4.8002 0.6783 29 8 2.2682 -3.5265 0.5726 30 1 -0.3633 0.0041 1.0277 31 1 -0.3633 0.8878 -0.5173 32 1 -0.3633 -0.8920 -0.5103 33 1 1.6583 2.1326 0.0004 34 1 4.1204 2.1326 -0.0102 35 1 5.3517 -0.0001 -0.0112 36 1 4.1206 -2.1323 -0.0025 37 1 1.9640 -2.8638 -2.0542 38 1 0.3339 -2.1841 -1.8146 39 1 0.1490 -4.7708 -4.2917 40 1 0.0736 -6.3349 -3.4456 41 1 -2.3690 -6.4413 -3.8619 42 1 -2.2928 -4.8771 -4.7078 43 1 -4.2962 -7.0050 -6.9487 44 1 0.0234 -6.8273 -1.6011 45 1 1.0124 -7.3821 -0.2291 46 1 -0.4276 -6.3768 0.0608 47 1 0.7211 -4.7034 1.2756 48 1 2.3044 -5.5096 1.1546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096428535.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:32 Heat of formation + Delta-G solvation = -87.952767 kcal Electronic energy + Delta-G solvation = -30340.145744 eV Core-core repulsion = 26294.344541 eV Total energy + Delta-G solvation = -4045.801203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.37337 -38.87495 -36.97253 -35.65473 -35.16509 -33.96678 -33.76031 -32.52468 -31.25668 -30.86936 -27.73174 -26.90318 -26.45256 -25.52068 -23.59774 -22.43433 -21.68621 -21.24129 -20.67751 -18.56634 -17.43501 -17.00154 -16.82735 -16.34387 -16.31044 -15.68319 -15.28975 -15.22182 -15.01779 -14.74519 -14.57328 -14.38405 -14.13607 -13.87896 -13.50127 -13.26485 -12.95123 -12.85381 -12.56547 -12.48514 -12.31930 -12.25548 -11.95210 -11.81023 -11.79249 -11.52393 -11.43406 -11.28895 -11.10360 -11.07952 -10.98369 -10.83827 -10.53238 -10.40354 -10.39660 -10.08972 -9.78008 -9.32918 -9.05466 -8.86293 -8.56874 -8.53337 -6.15506 -4.21249 0.65574 1.12966 1.24068 2.86836 3.24010 3.30445 3.33265 3.41986 3.59882 4.19386 4.34511 4.43450 4.48965 4.58334 4.66581 4.68071 4.80050 4.88417 4.95590 5.00197 5.07490 5.13821 5.19629 5.21444 5.34834 5.42769 5.46522 5.49198 5.50423 5.56514 5.63601 5.65707 5.73046 5.75605 5.87565 5.93947 6.00064 6.06382 6.27717 6.35197 6.38989 6.44596 6.51755 6.54890 6.82362 6.99147 7.25523 7.31171 7.77498 8.13956 8.82101 9.43727 10.95526 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.015253 B = 0.002753 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.233345 B =10166.740227 C =10700.027080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.131 4.131 6 C -0.087 4.087 7 C -0.084 4.084 8 C 0.124 3.876 9 H 0.075 0.925 10 C 0.093 3.907 11 N -1.007 6.007 12 S 2.587 3.413 13 O -0.958 6.958 14 O -0.966 6.966 15 C -0.589 4.589 16 C 0.029 3.971 17 C -0.521 4.521 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.118 3.882 26 H 0.082 0.918 27 C -0.184 4.184 28 C 0.057 3.943 29 O -0.372 6.372 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.130 0.870 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.265 0.735 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.099 0.901 47 H 0.060 0.940 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.610 10.889 15.644 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.071 4.071 3 C -0.140 4.140 4 C -0.133 4.133 5 C -0.149 4.149 6 C -0.105 4.105 7 C -0.085 4.085 8 C 0.064 3.936 9 H 0.093 0.907 10 C -0.033 4.033 11 N -0.844 5.844 12 S 2.688 3.312 13 O -0.949 6.949 14 O -0.956 6.956 15 C -0.723 4.723 16 C -0.010 4.010 17 C -0.560 4.560 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C 0.012 3.988 26 H 0.100 0.900 27 C -0.242 4.242 28 C -0.021 4.021 29 O -0.291 6.291 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.148 0.852 37 H 0.095 0.905 38 H 0.128 0.872 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.118 0.882 47 H 0.078 0.922 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.745 11.143 16.005 23.859 hybrid contribution 0.539 -0.801 -1.465 1.754 sum 14.283 10.342 14.540 22.855 Atomic orbital electron populations 1.20992 0.90925 1.03923 1.02733 1.19726 0.96187 0.92277 0.98912 1.20979 0.94249 0.97254 1.01553 1.21157 0.94304 0.98074 0.99759 1.21146 0.99870 0.92465 1.01416 1.21004 0.93400 0.98454 0.97647 1.19360 0.94014 0.92465 1.02653 1.21117 0.92956 0.85514 0.93974 0.90742 1.22100 1.00711 0.83504 0.96966 1.58204 1.41775 1.14482 1.69902 1.05830 0.73065 0.74977 0.77315 1.93593 1.72947 1.66514 1.61815 1.93500 1.75674 1.40190 1.86265 1.30540 1.11563 1.12419 1.17746 1.18958 0.88175 0.98228 0.95598 1.20996 0.93249 1.37993 1.03787 0.92040 1.25069 0.94915 0.95916 0.98559 1.69949 0.99495 1.46137 1.37247 0.86466 0.78358 0.79870 0.82587 1.20429 1.20961 1.19730 1.21673 0.95866 0.87240 0.94000 0.89961 1.22630 1.00843 0.95459 1.05237 1.23023 0.98613 0.84955 0.95473 1.87890 1.40025 1.18468 1.82699 0.90857 0.90905 0.90645 0.85887 0.86164 0.86102 0.85214 0.90521 0.87225 0.86203 0.86158 0.94853 0.94904 0.92491 0.91387 0.90910 0.88196 0.92207 0.87608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.22 36.01 0.33 -0.94 16 2 C -0.07 -0.75 5.88 -104.62 -0.62 -1.37 16 3 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 4 C -0.11 -1.00 10.05 -39.58 -0.40 -1.40 16 5 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 6 C -0.09 -0.91 9.35 -39.58 -0.37 -1.28 16 7 C -0.08 -0.95 5.07 -104.62 -0.53 -1.48 16 8 C 0.12 1.47 2.29 -27.73 -0.06 1.41 16 9 H 0.07 0.90 7.02 -51.93 -0.36 0.53 16 10 C 0.09 1.20 5.83 -3.53 -0.02 1.18 16 11 N -1.01 -14.05 3.26 -106.03 -0.35 -14.40 16 12 S 2.59 46.25 4.86 -107.50 -0.52 45.72 16 13 O -0.96 -18.64 13.69 -57.54 -0.79 -19.42 16 14 O -0.97 -19.58 16.33 -57.54 -0.94 -20.52 16 15 C -0.59 -11.32 5.86 37.16 0.22 -11.11 16 16 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 17 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 18 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 21 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.12 1.39 3.71 -67.42 -0.25 1.14 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 C -0.18 -2.27 7.62 37.15 0.28 -1.99 16 28 C 0.06 0.60 6.29 37.32 0.23 0.83 16 29 O -0.37 -4.35 9.22 -35.23 -0.32 -4.68 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 32 H 0.07 0.84 5.36 -51.93 -0.28 0.56 16 33 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.13 1.31 7.35 -52.49 -0.39 0.92 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.11 1.49 5.28 -51.93 -0.27 1.22 16 39 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 40 H 0.12 2.07 6.68 -51.92 -0.35 1.72 16 41 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.07 0.95 4.86 -51.93 -0.25 0.70 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.10 1.38 6.48 -51.93 -0.34 1.05 16 47 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 48 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 386.51 15.07 5.82 5.82 Total: -1.00 -33.47 386.51 -11.16 -44.63 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.27 Total: 2.97 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: -2.51 Total: -30.62 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.39 Total: -39.99 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -2.05 Total: -44.62 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 46.25 SS G_CDS: -0.52 Total: 45.72 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.47 -11.16 -44.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096428535.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.321 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds