Wall clock time and date at job start Tue Mar 31 2020 06:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.51423 * 2 1 4 4 C 1.53714 * 109.69782 * 239.87136 * 2 1 3 5 5 N 1.47155 * 108.16254 * 292.54890 * 4 2 1 6 6 S 1.65600 * 120.98336 * 129.43358 * 5 4 2 7 7 O 1.42100 * 104.27670 * 340.38608 * 6 5 4 8 8 O 1.42105 * 104.27182 * 212.53400 * 6 5 4 9 9 C 1.81401 * 104.45150 * 96.46116 * 6 5 4 10 10 C 1.53000 * 109.46813 * 172.86245 * 9 6 5 11 11 C 1.53001 * 109.46491 * 179.97438 * 10 9 6 12 12 C 1.50703 * 109.46928 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99788 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00163 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00122 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99850 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47006 * 90.00180 * 16 14 12 18 18 H 1.48498 * 109.47063 * 209.99944 * 16 14 12 19 19 H 1.48501 * 109.47244 * 329.99852 * 16 14 12 20 20 C 1.47158 * 118.03295 * 309.15845 * 5 4 2 21 21 H 1.09002 * 109.67881 * 291.06293 * 20 5 4 22 22 C 1.50694 * 109.67986 * 170.51260 * 20 5 4 23 23 C 1.38239 * 119.99867 * 261.96401 * 22 20 5 24 24 C 1.38234 * 120.00194 * 179.76497 * 23 22 20 25 25 C 1.38236 * 119.99907 * 0.48764 * 24 23 22 26 26 C 1.38240 * 120.00035 * 359.79244 * 25 24 23 27 27 C 1.38230 * 120.00480 * 82.24080 * 22 20 5 28 28 C 1.53290 * 108.38375 * 50.78319 * 20 5 4 29 29 O 1.42957 * 109.51307 * 120.10498 * 2 1 3 30 30 H 1.09001 * 109.47084 * 299.89728 * 1 2 3 31 31 H 1.09003 * 109.47091 * 59.89582 * 1 2 3 32 32 H 1.08998 * 109.47095 * 179.89672 * 1 2 3 33 33 H 1.09000 * 109.83717 * 172.86727 * 4 2 1 34 34 H 1.09004 * 109.74458 * 52.17313 * 4 2 1 35 35 H 1.08999 * 109.47016 * 292.86249 * 9 6 5 36 36 H 1.08999 * 109.46806 * 52.86156 * 9 6 5 37 37 H 1.08999 * 109.47333 * 299.99810 * 10 9 6 38 38 H 1.08992 * 109.46882 * 60.00153 * 10 9 6 39 39 H 1.08999 * 109.47234 * 299.99940 * 11 10 9 40 40 H 1.09002 * 109.47231 * 60.00461 * 11 10 9 41 41 H 0.96994 * 120.00419 * 179.97438 * 15 14 12 42 42 H 1.08004 * 119.99718 * 0.02562 * 23 22 20 43 43 H 1.07996 * 120.00272 * 180.25058 * 24 23 22 44 44 H 1.07997 * 120.00057 * 179.76406 * 25 24 23 45 45 H 1.07999 * 120.00403 * 179.97438 * 26 25 24 46 46 H 1.08002 * 119.99832 * 359.97438 * 27 22 20 47 47 H 1.09002 * 109.50912 * 67.62550 * 28 20 5 48 48 H 1.09002 * 109.51143 * 187.72414 * 28 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0481 -0.7264 -1.2517 5 7 1.6979 -2.1508 -1.1333 6 16 0.9319 -2.9457 -2.3677 7 8 0.3597 -1.9076 -3.1513 8 8 0.1134 -3.9047 -1.7121 9 6 2.2700 -3.7661 -3.2771 10 6 1.6724 -4.6842 -4.3453 11 6 2.8011 -5.3756 -5.1127 12 6 2.2126 -6.2804 -6.1644 13 1 1.1408 -6.3544 -6.2747 14 6 3.0425 -7.0128 -6.9866 15 7 2.5289 -7.8020 -7.9047 16 14 4.8963 -6.8841 -6.7962 17 1 5.3664 -7.9059 -5.8265 18 1 5.5461 -7.1141 -8.1115 19 1 5.2501 -5.5302 -6.2993 20 6 2.0541 -2.8494 0.1119 21 1 3.1372 -2.9520 0.1783 22 6 1.4123 -4.2127 0.1303 23 6 0.2300 -4.4109 0.8187 24 6 -0.3613 -5.6603 0.8315 25 6 0.2350 -6.7140 0.1645 26 6 1.4203 -6.5173 -0.5190 27 6 2.0088 -5.2666 -0.5363 28 6 1.5405 -2.0209 1.2950 29 8 2.0075 -0.6759 1.1657 30 1 -0.3633 0.5122 0.8909 31 1 -0.3633 0.5155 -0.8891 32 1 -0.3633 -1.0276 -0.0019 33 1 3.1306 -0.6190 -1.3202 34 1 1.5798 -0.3060 -2.1417 35 1 2.8989 -3.0146 -3.7543 36 1 2.8707 -4.3565 -2.5852 37 1 1.0435 -5.4357 -3.8680 38 1 1.0718 -4.0937 -5.0370 39 1 3.4297 -4.6238 -5.5900 40 1 3.4022 -5.9660 -4.4211 41 1 3.1127 -8.3169 -8.4834 42 1 -0.2340 -3.5884 1.3429 43 1 -1.2871 -5.8141 1.3659 44 1 -0.2250 -7.6911 0.1777 45 1 1.8865 -7.3407 -1.0399 46 1 2.9347 -5.1128 -1.0707 47 1 0.4506 -2.0290 1.2992 48 1 1.9115 -2.4479 2.2267 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096433548.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:16 Heat of formation + Delta-G solvation = -70.130014 kcal Electronic energy + Delta-G solvation = -31382.236920 eV Core-core repulsion = 27337.208570 eV Total energy + Delta-G solvation = -4045.028350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.149 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.48699 -38.89557 -36.84265 -35.75619 -35.21197 -34.83890 -33.32647 -32.25523 -30.89568 -30.62491 -28.45622 -28.14250 -26.13916 -24.57936 -23.58610 -22.47985 -21.57775 -20.64600 -20.15586 -18.76639 -17.82007 -17.17055 -16.93726 -16.72416 -16.29631 -15.85629 -15.65641 -15.28865 -15.13911 -14.96984 -14.46793 -14.26574 -14.13107 -14.11075 -13.31748 -13.26184 -12.97751 -12.92052 -12.70350 -12.39717 -12.34013 -12.11115 -12.03158 -11.91957 -11.84341 -11.67378 -11.55615 -11.43868 -11.16825 -11.02125 -10.97699 -10.85444 -10.55964 -10.36671 -10.09662 -9.88560 -9.67607 -9.29251 -8.92044 -8.70495 -8.60598 -8.45259 -6.10220 -4.09436 0.36376 1.38704 1.58770 2.63886 3.24333 3.32426 3.34393 3.47450 3.88972 3.94937 4.21331 4.24358 4.38430 4.42366 4.55563 4.69269 4.74174 4.84546 4.91233 4.98876 5.10461 5.15366 5.16404 5.22475 5.24321 5.27841 5.31902 5.43171 5.51449 5.55115 5.58460 5.73913 5.79934 5.85690 5.93585 6.06529 6.10629 6.15966 6.26608 6.32547 6.53962 6.56894 6.65570 6.68577 6.84763 7.10612 7.15233 7.25013 7.69240 8.45996 8.94193 9.50981 11.03124 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.003696 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.332917 B = 7574.925481 C = 8607.484185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.078 3.922 3 H 0.114 0.886 4 C 0.086 3.914 5 N -0.999 5.999 6 S 2.591 3.409 7 O -0.964 6.964 8 O -0.928 6.928 9 C -0.622 4.622 10 C -0.092 4.092 11 C -0.003 4.003 12 C -0.526 4.526 13 H 0.074 0.926 14 C 0.068 3.932 15 N -0.900 5.900 16 Si 0.878 3.122 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.166 3.834 21 H 0.091 0.909 22 C -0.090 4.090 23 C -0.079 4.079 24 C -0.108 4.108 25 C -0.109 4.109 26 C -0.101 4.101 27 C -0.124 4.124 28 C 0.051 3.949 29 O -0.372 6.372 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.264 0.736 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.119 0.881 47 H 0.067 0.933 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.988 12.855 21.997 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.019 3.981 3 H 0.131 0.869 4 C -0.040 4.040 5 N -0.837 5.837 6 S 2.689 3.311 7 O -0.955 6.955 8 O -0.918 6.918 9 C -0.753 4.753 10 C -0.131 4.131 11 C -0.041 4.041 12 C -0.564 4.564 13 H 0.092 0.908 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.706 3.294 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.191 1.191 20 C 0.060 3.940 21 H 0.109 0.891 22 C -0.092 4.092 23 C -0.098 4.098 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.119 4.119 27 C -0.143 4.143 28 C -0.027 4.027 29 O -0.290 6.290 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.074 0.926 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.141 0.859 46 H 0.137 0.863 47 H 0.085 0.915 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.763 12.869 21.816 25.390 hybrid contribution 1.557 -0.348 -0.550 1.687 sum -0.207 12.521 21.266 24.679 Atomic orbital electron populations 1.22414 0.95842 1.03151 1.03095 1.22581 0.94134 0.96361 0.85021 0.86868 1.22290 1.01294 0.80175 1.00222 1.58142 1.78304 1.18505 1.28705 1.05723 0.76883 0.74686 0.73785 1.93535 1.75228 1.56094 1.70602 1.93758 1.64764 1.62334 1.70966 1.30833 1.18791 1.12646 1.13011 1.21253 1.00372 0.96894 0.94630 1.19516 0.93697 0.95615 0.95316 1.21122 0.95461 1.24167 1.15623 0.90785 1.25012 0.98723 0.94757 0.94826 1.69906 1.35445 1.27821 1.20708 0.86802 0.86053 0.78986 0.77596 1.20186 1.21231 1.19077 1.20418 0.99693 0.88970 0.84944 0.89095 1.19473 0.96348 0.93248 1.00105 1.20719 0.93829 0.96959 0.98306 1.20963 0.99121 0.93129 0.99437 1.21094 0.95627 0.98818 0.97209 1.21031 0.95762 0.96866 0.98219 1.21026 0.99948 0.93587 0.99698 1.23085 0.99731 0.82323 0.97528 1.88001 1.72496 1.25207 1.43319 0.91589 0.90837 0.91942 0.90476 0.87495 0.85805 0.85393 0.90822 0.91542 0.96315 0.96676 0.92617 0.86598 0.86582 0.86425 0.85865 0.86286 0.91456 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 8.82 37.16 0.33 -1.37 16 2 C 0.08 0.68 3.93 -26.36 -0.10 0.58 16 3 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.09 0.82 6.11 -3.31 -0.02 0.80 16 5 N -1.00 -11.27 2.78 -107.01 -0.30 -11.57 16 6 S 2.59 38.00 4.88 -107.50 -0.52 37.48 16 7 O -0.96 -16.63 16.45 -57.54 -0.95 -17.58 16 8 O -0.93 -15.03 12.50 -57.54 -0.72 -15.75 16 9 C -0.62 -9.37 5.83 37.16 0.22 -9.15 16 10 C -0.09 -1.81 5.16 -26.73 -0.14 -1.95 16 11 C 0.00 -0.07 4.04 -27.88 -0.11 -0.18 16 12 C -0.53 -14.91 9.66 -34.44 -0.33 -15.24 16 13 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 16 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 20 C 0.17 1.68 3.34 -68.58 -0.23 1.45 16 21 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 22 C -0.09 -1.05 2.95 -104.63 -0.31 -1.36 16 23 C -0.08 -0.92 7.71 -39.58 -0.31 -1.22 16 24 C -0.11 -1.27 10.03 -39.58 -0.40 -1.67 16 25 C -0.11 -1.35 10.05 -39.58 -0.40 -1.75 16 26 C -0.10 -1.32 10.05 -39.58 -0.40 -1.72 16 27 C -0.12 -1.56 7.04 -39.58 -0.28 -1.84 16 28 C 0.05 0.46 5.21 37.31 0.19 0.66 16 29 O -0.37 -3.63 10.58 -35.23 -0.37 -4.00 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.66 6.12 -51.93 -0.32 0.34 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.11 1.06 6.74 -51.93 -0.35 0.71 16 35 H 0.12 1.67 8.14 -51.92 -0.42 1.25 16 36 H 0.13 1.69 5.15 -51.92 -0.27 1.43 16 37 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 40 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.12 1.12 5.82 -52.48 -0.31 0.81 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 46 H 0.12 1.34 5.98 -52.49 -0.31 1.03 16 47 H 0.07 0.61 4.28 -51.93 -0.22 0.38 16 48 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -34.71 377.37 -10.65 -45.36 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.20 Total: 2.63 kcal Atomic # 6 Polarization: -29.72 SS G_CDS: -2.38 Total: -32.10 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.48 Total: -38.41 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -2.04 Total: -37.33 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: 38.00 SS G_CDS: -0.52 Total: 37.48 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.71 -10.65 -45.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096433548.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.767 kcal (2) G-P(sol) polarization free energy of solvation -34.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds