Wall clock time and date at job start Tue Mar 31 2020 06:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.51343 * 2 1 4 4 C 1.53298 * 109.51615 * 120.09861 * 2 1 3 5 5 N 1.47150 * 108.38707 * 172.27906 * 4 2 1 6 6 S 1.65594 * 120.98270 * 129.49103 * 5 4 2 7 7 O 1.42107 * 104.27671 * 213.16305 * 6 5 4 8 8 O 1.42101 * 104.27780 * 341.01991 * 6 5 4 9 9 C 1.81399 * 104.45363 * 97.09391 * 6 5 4 10 10 C 1.52998 * 109.46999 * 186.30716 * 9 6 5 11 11 C 1.53008 * 109.46907 * 179.97438 * 10 9 6 12 12 C 1.50695 * 109.46913 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00367 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99781 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99711 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99941 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47204 * 59.99646 * 16 14 12 18 18 H 1.48501 * 109.47200 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47035 * 299.99877 * 16 14 12 20 20 C 1.47151 * 118.03254 * 309.46498 * 5 4 2 21 21 H 1.09007 * 109.68172 * 290.80846 * 20 5 4 22 22 C 1.50701 * 109.68116 * 170.26333 * 20 5 4 23 23 C 1.38242 * 119.99481 * 261.35053 * 22 20 5 24 24 C 1.38236 * 119.99525 * 179.78411 * 23 22 20 25 25 C 1.38232 * 120.00176 * 0.46506 * 24 23 22 26 26 C 1.38239 * 120.00225 * 359.76267 * 25 24 23 27 27 C 1.38232 * 119.99519 * 0.02653 * 26 25 24 28 28 C 1.53288 * 108.38725 * 50.53500 * 20 5 4 29 29 O 1.42956 * 109.26748 * 307.67438 * 28 20 5 30 30 H 1.09003 * 109.47330 * 299.90022 * 1 2 3 31 31 H 1.09001 * 109.47319 * 59.90041 * 1 2 3 32 32 H 1.09001 * 109.47108 * 179.90405 * 1 2 3 33 33 H 1.09006 * 109.67893 * 52.55185 * 4 2 1 34 34 H 1.09006 * 109.68149 * 292.00362 * 4 2 1 35 35 H 1.09004 * 109.46901 * 306.30651 * 9 6 5 36 36 H 1.08994 * 109.47424 * 66.30398 * 9 6 5 37 37 H 1.09000 * 109.47470 * 299.99298 * 10 9 6 38 38 H 1.09000 * 109.47429 * 60.00279 * 10 9 6 39 39 H 1.09000 * 109.46726 * 300.00052 * 11 10 9 40 40 H 1.09000 * 109.46605 * 60.00072 * 11 10 9 41 41 H 0.97003 * 119.99919 * 179.97438 * 15 14 12 42 42 H 1.07995 * 120.00045 * 359.97438 * 23 22 20 43 43 H 1.08004 * 119.99895 * 180.24436 * 24 23 22 44 44 H 1.08001 * 120.00304 * 179.79076 * 25 24 23 45 45 H 1.07996 * 120.00272 * 180.02562 * 26 25 24 46 46 H 1.08003 * 119.99908 * 179.97438 * 27 26 25 47 47 H 1.09002 * 109.51441 * 67.62336 * 28 20 5 48 48 H 1.08996 * 109.51734 * 187.71923 * 28 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7246 1.2501 5 7 3.5013 -0.8745 1.1346 6 16 4.5057 -0.4165 2.3690 7 8 5.6796 0.0434 1.7133 8 8 3.7144 0.4624 3.1568 9 6 4.8419 -1.9530 3.2728 10 6 5.6401 -1.6356 4.5389 11 6 5.9232 -2.9315 5.3015 12 6 6.7099 -2.6190 6.5483 13 1 6.9805 -1.5982 6.7744 14 6 7.0842 -3.6363 7.4004 15 7 6.7542 -4.8793 7.1253 16 14 8.0587 -3.2488 8.9462 17 1 7.2741 -2.3290 9.8085 18 1 8.3336 -4.5066 9.6864 19 1 9.3427 -2.6029 8.5730 20 6 4.0417 -1.4439 -0.1101 21 1 3.7775 -2.4994 -0.1759 22 6 5.5411 -1.2933 -0.1281 23 6 6.1228 -0.2523 -0.8274 24 6 7.4979 -0.1116 -0.8402 25 6 8.2917 -1.0173 -0.1618 26 6 7.7103 -2.0610 0.5337 27 6 6.3350 -2.1992 0.5501 28 6 3.4322 -0.6843 -1.2938 29 8 2.0084 -0.6761 -1.1664 30 1 -0.3634 0.5123 0.8909 31 1 -0.3634 0.5154 -0.8891 32 1 -0.3633 -1.0277 -0.0017 33 1 1.5765 -1.7077 1.3211 34 1 1.8022 -0.1393 2.1378 35 1 3.8994 -2.4271 3.5467 36 1 5.4178 -2.6282 2.6399 37 1 6.5826 -1.1616 4.2650 38 1 5.0642 -0.9604 5.1718 39 1 4.9805 -3.4051 5.5754 40 1 6.4989 -3.6070 4.6688 41 1 7.0178 -5.5950 7.7245 42 1 5.5027 0.4527 -1.3611 43 1 7.9522 0.7039 -1.3833 44 1 9.3662 -0.9094 -0.1746 45 1 8.3305 -2.7684 1.0641 46 1 5.8807 -3.0149 1.0930 47 1 3.8032 0.3406 -1.2987 48 1 3.7115 -1.1768 -2.2252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096433549.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:20 Heat of formation + Delta-G solvation = -77.249950 kcal Electronic energy + Delta-G solvation = -30911.693644 eV Core-core repulsion = 26866.356550 eV Total energy + Delta-G solvation = -4045.337094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.149 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.31569 -38.80186 -36.79116 -35.70607 -35.18869 -34.69334 -33.59946 -32.23154 -30.92712 -30.83779 -27.97049 -27.67872 -26.18198 -23.99808 -23.66614 -22.46355 -21.64599 -21.04495 -20.44168 -18.76637 -17.70629 -17.03534 -16.70212 -16.63937 -16.26668 -15.87164 -15.41810 -15.21788 -14.97108 -14.87314 -14.59997 -14.49718 -14.12149 -13.91360 -13.26144 -13.21875 -12.87706 -12.62286 -12.56332 -12.49466 -12.26969 -12.13220 -11.96761 -11.88910 -11.75170 -11.53030 -11.43304 -11.23473 -11.12593 -10.94767 -10.88786 -10.80783 -10.65145 -10.44913 -10.29316 -9.94624 -9.46909 -9.22184 -8.85721 -8.69340 -8.44929 -8.41661 -6.06775 -4.09885 0.43551 1.39449 1.58956 2.69015 3.30844 3.34789 3.37983 3.42195 3.89518 4.00621 4.24557 4.29411 4.41302 4.45912 4.62729 4.74314 4.78052 4.88166 4.99384 5.05094 5.13409 5.18117 5.22832 5.27405 5.29924 5.32947 5.38753 5.41908 5.49153 5.55380 5.65205 5.75721 5.83700 5.89857 5.93385 6.07290 6.15963 6.23003 6.37652 6.44699 6.55073 6.57180 6.68032 6.86176 6.88900 7.15568 7.55340 7.65670 7.91035 8.31784 8.95981 9.54724 11.04360 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.003398 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.297203 B = 8237.988101 C = 9684.154804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.064 0.936 4 C 0.086 3.914 5 N -1.002 6.002 6 S 2.589 3.411 7 O -0.933 6.933 8 O -0.965 6.965 9 C -0.616 4.616 10 C -0.101 4.101 11 C 0.033 3.967 12 C -0.527 4.527 13 H 0.057 0.943 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.894 3.106 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.164 3.836 21 H 0.092 0.908 22 C -0.089 4.089 23 C -0.080 4.080 24 C -0.109 4.109 25 C -0.111 4.111 26 C -0.102 4.102 27 C -0.125 4.125 28 C 0.057 3.943 29 O -0.375 6.375 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.262 0.738 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.062 0.938 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.827 7.407 -20.444 23.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.017 3.983 3 H 0.082 0.918 4 C -0.040 4.040 5 N -0.838 5.838 6 S 2.688 3.312 7 O -0.923 6.923 8 O -0.956 6.956 9 C -0.747 4.747 10 C -0.141 4.141 11 C -0.006 4.006 12 C -0.565 4.565 13 H 0.075 0.925 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.721 3.279 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C 0.058 3.942 21 H 0.110 0.890 22 C -0.091 4.091 23 C -0.099 4.099 24 C -0.127 4.127 25 C -0.129 4.129 26 C -0.120 4.120 27 C -0.143 4.143 28 C -0.021 4.021 29 O -0.294 6.294 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.141 0.859 46 H 0.140 0.860 47 H 0.080 0.920 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.674 8.043 -20.345 23.184 hybrid contribution 0.666 -0.555 1.330 1.588 sum -7.008 7.489 -19.015 21.605 Atomic orbital electron populations 1.21747 0.92197 1.03339 1.02934 1.22446 0.95401 0.95429 0.85053 0.91791 1.22227 0.79444 1.02152 1.00132 1.58178 1.16618 1.80199 1.28849 1.05778 0.74045 0.77685 0.73701 1.93743 1.48025 1.79364 1.71172 1.93526 1.69685 1.62021 1.70364 1.30808 1.10629 1.20908 1.12357 1.21453 0.97615 1.03168 0.91833 1.19040 0.97067 0.90172 0.94271 1.21210 1.34912 0.93652 1.06723 0.92485 1.25010 0.96075 0.95017 0.98182 1.69946 1.46435 0.99255 1.37768 0.86629 0.80588 0.77614 0.83059 1.20107 1.21213 1.20110 1.20429 0.89952 0.98781 0.84988 0.88968 1.19487 0.92669 0.96994 0.99915 1.20742 0.94974 0.95862 0.98319 1.20963 0.93658 0.98633 0.99449 1.21083 0.99511 0.95021 0.97269 1.21023 0.94505 0.98120 0.98320 1.21072 0.94705 0.98977 0.99596 1.23056 0.81002 1.00436 0.97627 1.87965 1.20603 1.77617 1.43170 0.90554 0.91478 0.91423 0.90443 0.87478 0.85781 0.85151 0.91840 0.91746 0.96217 0.96167 0.92838 0.86506 0.86574 0.86465 0.85882 0.86002 0.91951 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.57 37.15 0.36 -0.70 16 2 C 0.08 0.74 3.40 -26.58 -0.09 0.65 16 3 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.09 0.91 5.98 -3.53 -0.02 0.89 16 5 N -1.00 -12.23 3.27 -107.25 -0.35 -12.58 16 6 S 2.59 40.05 4.87 -107.50 -0.52 39.53 16 7 O -0.93 -15.64 12.56 -57.54 -0.72 -16.36 16 8 O -0.97 -17.57 16.44 -57.54 -0.95 -18.51 16 9 C -0.62 -9.95 5.96 37.16 0.22 -9.73 16 10 C -0.10 -2.09 5.16 -26.73 -0.14 -2.23 16 11 C 0.03 0.83 4.97 -27.88 -0.14 0.69 16 12 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 16 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 C 0.16 1.78 3.34 -68.58 -0.23 1.55 16 21 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 22 C -0.09 -1.09 2.96 -104.62 -0.31 -1.39 16 23 C -0.08 -0.95 7.75 -39.58 -0.31 -1.26 16 24 C -0.11 -1.29 10.04 -39.58 -0.40 -1.69 16 25 C -0.11 -1.36 10.05 -39.58 -0.40 -1.76 16 26 C -0.10 -1.34 10.05 -39.58 -0.40 -1.74 16 27 C -0.12 -1.62 6.83 -39.59 -0.27 -1.89 16 28 C 0.06 0.54 5.58 37.31 0.21 0.75 16 29 O -0.37 -3.93 10.40 -35.23 -0.37 -4.30 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.11 1.18 6.73 -51.93 -0.35 0.83 16 35 H 0.12 1.82 8.14 -51.92 -0.42 1.40 16 36 H 0.13 1.93 4.79 -51.93 -0.25 1.68 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.12 1.16 5.81 -52.49 -0.30 0.85 16 43 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 44 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 46 H 0.12 1.45 6.05 -52.48 -0.32 1.13 16 47 H 0.06 0.59 6.18 -51.93 -0.32 0.27 16 48 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 385.35 15.07 5.81 5.81 Total: -1.00 -34.37 385.35 -11.13 -45.50 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.42 Total: 1.61 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: -2.32 Total: -31.47 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.39 Total: -38.36 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -2.03 Total: -39.17 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 40.05 SS G_CDS: -0.52 Total: 39.53 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.37 -11.13 -45.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096433549.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.749 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds