Wall clock time and date at job start Tue Mar 31 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.51343 * 2 1 4 4 C 1.53298 * 109.51615 * 120.09861 * 2 1 3 5 5 N 1.47150 * 108.38707 * 172.27906 * 4 2 1 6 6 S 1.65594 * 120.98270 * 129.49103 * 5 4 2 7 7 O 1.42107 * 104.27671 * 213.16305 * 6 5 4 8 8 O 1.42101 * 104.27780 * 341.01991 * 6 5 4 9 9 C 1.81399 * 104.45363 * 97.09391 * 6 5 4 10 10 C 1.52998 * 109.46999 * 186.30716 * 9 6 5 11 11 C 1.53008 * 109.46907 * 179.97438 * 10 9 6 12 12 C 1.50695 * 109.46913 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00367 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99781 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99711 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99941 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47204 * 59.99646 * 16 14 12 18 18 H 1.48501 * 109.47200 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47035 * 299.99877 * 16 14 12 20 20 C 1.47151 * 118.03254 * 309.46498 * 5 4 2 21 21 H 1.09007 * 109.68172 * 290.80846 * 20 5 4 22 22 C 1.50701 * 109.68116 * 170.26333 * 20 5 4 23 23 C 1.38242 * 119.99481 * 261.35053 * 22 20 5 24 24 C 1.38236 * 119.99525 * 179.78411 * 23 22 20 25 25 C 1.38232 * 120.00176 * 0.46506 * 24 23 22 26 26 C 1.38239 * 120.00225 * 359.76267 * 25 24 23 27 27 C 1.38232 * 119.99519 * 0.02653 * 26 25 24 28 28 C 1.53288 * 108.38725 * 50.53500 * 20 5 4 29 29 O 1.42956 * 109.26748 * 307.67438 * 28 20 5 30 30 H 1.09003 * 109.47330 * 299.90022 * 1 2 3 31 31 H 1.09001 * 109.47319 * 59.90041 * 1 2 3 32 32 H 1.09001 * 109.47108 * 179.90405 * 1 2 3 33 33 H 1.09006 * 109.67893 * 52.55185 * 4 2 1 34 34 H 1.09006 * 109.68149 * 292.00362 * 4 2 1 35 35 H 1.09004 * 109.46901 * 306.30651 * 9 6 5 36 36 H 1.08994 * 109.47424 * 66.30398 * 9 6 5 37 37 H 1.09000 * 109.47470 * 299.99298 * 10 9 6 38 38 H 1.09000 * 109.47429 * 60.00279 * 10 9 6 39 39 H 1.09000 * 109.46726 * 300.00052 * 11 10 9 40 40 H 1.09000 * 109.46605 * 60.00072 * 11 10 9 41 41 H 0.97003 * 119.99919 * 179.97438 * 15 14 12 42 42 H 1.07995 * 120.00045 * 359.97438 * 23 22 20 43 43 H 1.08004 * 119.99895 * 180.24436 * 24 23 22 44 44 H 1.08001 * 120.00304 * 179.79076 * 25 24 23 45 45 H 1.07996 * 120.00272 * 180.02562 * 26 25 24 46 46 H 1.08003 * 119.99908 * 179.97438 * 27 26 25 47 47 H 1.09002 * 109.51441 * 67.62336 * 28 20 5 48 48 H 1.08996 * 109.51734 * 187.71923 * 28 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7246 1.2501 5 7 3.5013 -0.8745 1.1346 6 16 4.5057 -0.4165 2.3690 7 8 5.6796 0.0434 1.7133 8 8 3.7144 0.4624 3.1568 9 6 4.8419 -1.9530 3.2728 10 6 5.6401 -1.6356 4.5389 11 6 5.9232 -2.9315 5.3015 12 6 6.7099 -2.6190 6.5483 13 1 6.9805 -1.5982 6.7744 14 6 7.0842 -3.6363 7.4004 15 7 6.7542 -4.8793 7.1253 16 14 8.0587 -3.2488 8.9462 17 1 7.2741 -2.3290 9.8085 18 1 8.3336 -4.5066 9.6864 19 1 9.3427 -2.6029 8.5730 20 6 4.0417 -1.4439 -0.1101 21 1 3.7775 -2.4994 -0.1759 22 6 5.5411 -1.2933 -0.1281 23 6 6.1228 -0.2523 -0.8274 24 6 7.4979 -0.1116 -0.8402 25 6 8.2917 -1.0173 -0.1618 26 6 7.7103 -2.0610 0.5337 27 6 6.3350 -2.1992 0.5501 28 6 3.4322 -0.6843 -1.2938 29 8 2.0084 -0.6761 -1.1664 30 1 -0.3634 0.5123 0.8909 31 1 -0.3634 0.5154 -0.8891 32 1 -0.3633 -1.0277 -0.0017 33 1 1.5765 -1.7077 1.3211 34 1 1.8022 -0.1393 2.1378 35 1 3.8994 -2.4271 3.5467 36 1 5.4178 -2.6282 2.6399 37 1 6.5826 -1.1616 4.2650 38 1 5.0642 -0.9604 5.1718 39 1 4.9805 -3.4051 5.5754 40 1 6.4989 -3.6070 4.6688 41 1 7.0178 -5.5950 7.7245 42 1 5.5027 0.4527 -1.3611 43 1 7.9522 0.7039 -1.3833 44 1 9.3662 -0.9094 -0.1746 45 1 8.3305 -2.7684 1.0641 46 1 5.8807 -3.0149 1.0930 47 1 3.8032 0.3406 -1.2987 48 1 3.7115 -1.1768 -2.2252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096433549.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:19 Heat of formation + Delta-G solvation = -98.966958 kcal Electronic energy + Delta-G solvation = -30912.635364 eV Core-core repulsion = 26866.356550 eV Total energy + Delta-G solvation = -4046.278814 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.149 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.17886 -39.68116 -38.06611 -36.99903 -36.52532 -36.09227 -34.38401 -34.21925 -31.80926 -31.73473 -29.69026 -28.63009 -27.02517 -25.62117 -24.76512 -23.38719 -22.53248 -22.42129 -21.70491 -19.91260 -18.81730 -18.57653 -17.89189 -17.72271 -17.28840 -17.14356 -16.53752 -16.45157 -16.17283 -16.02529 -15.70258 -15.61037 -15.38339 -14.82509 -14.52095 -14.25039 -14.13170 -14.06949 -13.80427 -13.47500 -13.33897 -13.20096 -13.14082 -13.05673 -12.97981 -12.76780 -12.73654 -12.67526 -12.56254 -12.30773 -12.17110 -12.02427 -11.82699 -11.65893 -11.48626 -11.41932 -11.25135 -11.00575 -10.59425 -9.82924 -9.64490 -9.40530 -8.24573 -6.35981 -0.80823 0.45503 0.64271 1.38303 1.40833 1.48857 1.59304 2.37897 2.69751 2.75895 2.95091 3.08645 3.12005 3.38373 3.59408 3.69823 3.76405 3.89058 3.96732 4.04664 4.13643 4.20600 4.26711 4.32380 4.36193 4.37455 4.57739 4.59334 4.62437 4.65989 4.74314 4.85078 4.87972 4.93556 4.94633 5.01297 5.10070 5.17502 5.24640 5.32451 5.41325 5.43801 5.58818 5.61748 5.65498 5.74288 5.76132 6.14693 6.16900 6.24988 6.78716 7.33290 8.86677 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.003398 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.297203 B = 8237.988101 C = 9684.154804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.074 3.926 3 H 0.059 0.941 4 C 0.077 3.923 5 N -0.995 5.995 6 S 2.611 3.389 7 O -0.946 6.946 8 O -0.993 6.993 9 C -0.620 4.620 10 C -0.097 4.097 11 C 0.035 3.965 12 C -0.554 4.554 13 H 0.059 0.941 14 C 0.005 3.995 15 N -0.928 5.928 16 Si 0.961 3.039 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.267 1.267 20 C 0.162 3.838 21 H 0.107 0.893 22 C -0.094 4.094 23 C -0.088 4.088 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.140 4.140 28 C 0.057 3.943 29 O -0.381 6.381 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.000 1.000 40 H 0.003 0.997 41 H 0.265 0.735 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.133 0.867 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.064 0.936 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.373 8.249 -21.456 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.015 3.985 3 H 0.077 0.923 4 C -0.047 4.047 5 N -0.833 5.833 6 S 2.710 3.290 7 O -0.936 6.936 8 O -0.983 6.983 9 C -0.750 4.750 10 C -0.136 4.136 11 C -0.003 4.003 12 C -0.592 4.592 13 H 0.077 0.923 14 C -0.193 4.193 15 N -0.568 5.568 16 Si 0.786 3.214 17 H -0.192 1.192 18 H -0.205 1.205 19 H -0.192 1.192 20 C 0.057 3.943 21 H 0.125 0.875 22 C -0.096 4.096 23 C -0.107 4.107 24 C -0.135 4.135 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.159 4.159 28 C -0.021 4.021 29 O -0.299 6.299 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.156 0.844 36 H 0.160 0.840 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.019 0.981 40 H 0.021 0.979 41 H 0.074 0.926 42 H 0.154 0.846 43 H 0.157 0.843 44 H 0.151 0.849 45 H 0.140 0.860 46 H 0.143 0.857 47 H 0.082 0.918 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.217 8.885 -21.346 24.538 hybrid contribution 0.814 -0.831 1.562 1.948 sum -7.402 8.054 -19.784 22.607 Atomic orbital electron populations 1.21763 0.90405 1.03927 1.03805 1.22541 0.96795 0.94886 0.84269 0.92259 1.22484 0.78249 1.03343 1.00647 1.57908 1.17113 1.80150 1.28175 1.04935 0.73763 0.76761 0.73586 1.93726 1.49091 1.79485 1.71262 1.93488 1.70377 1.62844 1.71636 1.30815 1.10782 1.22602 1.10759 1.21218 0.98417 1.00569 0.93437 1.18918 0.95438 0.92020 0.93921 1.21679 1.35514 0.93947 1.08054 0.92322 1.25919 0.97049 0.94798 1.01584 1.70062 1.47446 1.00206 1.39100 0.85555 0.79241 0.77750 0.78893 1.19243 1.20483 1.19174 1.20647 0.89217 0.99839 0.84618 0.87537 1.19638 0.93359 0.96861 0.99741 1.21082 0.95418 0.95993 0.98159 1.21320 0.93893 0.99039 0.99296 1.21361 1.00601 0.94888 0.97136 1.21218 0.94963 0.98881 0.99169 1.21229 0.94904 0.99573 1.00183 1.23167 0.80568 1.00577 0.97776 1.87972 1.20982 1.77655 1.43321 0.89471 0.90867 0.90974 0.88693 0.88005 0.84445 0.84007 0.91909 0.92076 0.98112 0.97857 0.92577 0.84565 0.84324 0.84948 0.85993 0.85725 0.91825 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.57 71.98 0.69 -1.06 16 2 C 0.07 1.29 3.40 30.69 0.10 1.39 16 3 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 4 C 0.08 1.51 5.98 86.36 0.52 2.03 16 5 N -0.99 -22.80 3.27 -493.23 -1.61 -24.41 16 6 S 2.61 79.18 4.87 -56.49 -0.28 78.90 16 7 O -0.95 -31.07 12.56 -127.65 -1.60 -32.67 16 8 O -0.99 -35.73 16.44 -127.65 -2.10 -37.83 16 9 C -0.62 -20.06 5.96 71.98 0.43 -19.63 16 10 C -0.10 -4.10 5.16 30.60 0.16 -3.94 16 11 C 0.04 1.85 4.97 29.85 0.15 1.99 16 12 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16 13 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 14 C 0.00 0.29 5.46 84.66 0.46 0.75 16 15 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 16 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 C 0.16 3.19 3.34 44.22 0.15 3.34 16 21 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 22 C -0.09 -2.17 2.96 -19.86 -0.06 -2.23 16 23 C -0.09 -1.94 7.75 22.27 0.17 -1.76 16 24 C -0.12 -2.61 10.04 22.27 0.22 -2.38 16 25 C -0.12 -2.92 10.05 22.27 0.22 -2.70 16 26 C -0.12 -3.29 10.05 22.27 0.22 -3.07 16 27 C -0.14 -3.59 6.83 22.27 0.15 -3.44 16 28 C 0.06 0.94 5.58 72.08 0.40 1.34 16 29 O -0.38 -7.00 10.40 -148.98 -1.55 -8.55 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.10 2.12 6.73 -2.38 -0.02 2.10 16 35 H 0.14 4.01 8.14 -2.39 -0.02 3.99 16 36 H 0.14 4.23 4.79 -2.39 -0.01 4.22 16 37 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 42 H 0.14 2.37 5.81 -2.91 -0.02 2.35 16 43 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 44 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 45 H 0.12 3.09 8.06 -2.91 -0.02 3.07 16 46 H 0.13 2.97 6.05 -2.91 -0.02 2.95 16 47 H 0.06 1.04 6.18 -2.39 -0.01 1.02 16 48 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -73.47 385.35 0.35 -73.13 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.95 Total: 21.61 kcal Atomic # 6 Polarization: -65.20 SS G_CDS: 4.23 Total: -60.97 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -1.33 Total: -79.92 kcal Atomic # 8 Polarization: -73.80 SS G_CDS: -5.25 Total: -79.05 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 79.18 SS G_CDS: -0.28 Total: 78.90 kcal Total: -73.47 0.35 -73.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096433549.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.841 kcal (2) G-P(sol) polarization free energy of solvation -73.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds