Wall clock time and date at job start Tue Mar 31 2020 05:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47251 * 2 1 4 4 H 1.09002 * 109.79508 * 304.33897 * 3 2 1 5 5 C 1.54208 * 109.80530 * 183.46474 * 3 2 1 6 6 N 1.46440 * 109.00021 * 180.02562 * 5 3 2 7 7 C 1.46905 * 111.00366 * 215.56856 * 6 5 3 8 8 C 1.40088 * 114.97829 * 88.53725 * 6 5 3 9 9 C 1.40198 * 115.34340 * 148.59454 * 8 6 5 10 10 C 1.37558 * 120.88121 * 177.65995 * 9 8 6 11 11 C 1.38323 * 120.13466 * 359.75140 * 10 9 8 12 12 C 1.38067 * 119.50005 * 1.13657 * 11 10 9 13 13 C 1.38333 * 126.32119 * 328.09666 * 8 6 5 14 14 C 1.49775 * 120.96128 * 6.43522 * 13 8 6 15 15 N 1.45202 * 109.80869 * 65.16143 * 3 2 1 16 16 S 1.65597 * 121.39115 * 267.83524 * 15 3 2 17 17 O 1.42103 * 104.27731 * 146.34743 * 16 15 3 18 18 O 1.42104 * 104.27468 * 18.49516 * 16 15 3 19 19 C 1.81399 * 104.45179 * 262.42112 * 16 15 3 20 20 C 1.53003 * 109.46981 * 175.04505 * 19 16 15 21 21 C 1.50694 * 109.46955 * 180.02562 * 20 19 16 22 22 H 1.08004 * 120.00081 * 359.97438 * 21 20 19 23 23 C 1.37883 * 120.00236 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99627 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99963 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46536 * 179.97438 * 25 23 21 27 27 H 1.48498 * 109.47388 * 299.99445 * 25 23 21 28 28 H 1.48498 * 109.47209 * 60.00224 * 25 23 21 29 29 H 1.08993 * 109.47030 * 173.54768 * 1 2 3 30 30 H 1.09003 * 109.46684 * 293.54935 * 1 2 3 31 31 H 1.08996 * 109.46962 * 53.54550 * 1 2 3 32 32 H 1.08999 * 109.47168 * 239.99329 * 2 1 3 33 33 H 1.09006 * 109.47347 * 119.99539 * 2 1 3 34 34 H 1.09003 * 109.54848 * 299.86173 * 5 3 2 35 35 H 1.08998 * 109.55486 * 60.15034 * 5 3 2 36 36 H 1.08995 * 109.46715 * 43.88131 * 7 6 5 37 37 H 1.09001 * 109.47280 * 163.87586 * 7 6 5 38 38 H 1.08994 * 109.47101 * 283.87940 * 7 6 5 39 39 H 1.08001 * 119.56351 * 357.63890 * 9 8 6 40 40 H 1.07997 * 119.93073 * 179.72235 * 10 9 8 41 41 H 1.08004 * 120.24943 * 181.16188 * 11 10 9 42 42 H 1.07995 * 119.74078 * 180.12861 * 12 11 10 43 43 H 1.08999 * 109.13506 * 191.60210 * 14 13 8 44 44 H 1.09006 * 109.34460 * 72.08807 * 14 13 8 45 45 H 1.09002 * 109.46680 * 55.04659 * 19 16 15 46 46 H 1.08996 * 109.47031 * 295.04364 * 19 16 15 47 47 H 1.08996 * 109.47288 * 60.00077 * 20 19 16 48 48 H 1.08996 * 109.47123 * 299.99803 * 20 19 16 49 49 H 0.97000 * 119.99923 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6177 1.9834 -0.8469 5 6 3.5796 1.4523 -0.0877 6 7 4.0484 2.8397 -0.0858 7 6 5.2264 2.9985 -0.9490 8 6 4.2794 3.3843 1.1840 9 6 5.3024 4.3408 1.2497 10 6 5.5931 4.9836 2.4305 11 6 4.8707 4.6952 3.5743 12 6 3.8733 3.7417 3.5262 13 6 3.5954 3.0737 2.3456 14 6 2.5839 1.9695 2.3724 15 7 1.6631 2.0977 1.2397 16 16 0.2544 2.9591 1.3664 17 8 -0.1635 2.7520 2.7087 18 8 -0.5339 2.5040 0.2752 19 6 0.7546 4.6844 1.1145 20 6 -0.4880 5.5767 1.0860 21 6 -0.0724 7.0099 0.8761 22 1 0.9733 7.2596 0.7736 23 6 -1.0273 8.0028 0.8158 24 7 -2.3007 7.6989 0.9411 25 14 -0.5121 9.7795 0.5563 26 1 -1.7181 10.6455 0.5286 27 1 0.3774 10.2043 1.6670 28 1 0.2137 9.9011 -0.7335 29 1 -0.3633 -1.0211 -0.1155 30 1 -0.3633 0.4106 0.9421 31 1 -0.3633 0.6106 -0.8266 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.9972 0.9254 0.7703 35 1 3.8957 0.9615 -1.0081 36 1 5.0669 2.4612 -1.8838 37 1 5.3822 4.0565 -1.1601 38 1 6.1041 2.5958 -0.4436 39 1 5.8699 4.5758 0.3614 40 1 6.3874 5.7146 2.4648 41 1 5.0850 5.2123 4.4980 42 1 3.3055 3.5150 4.4164 43 1 2.0211 2.0230 3.3043 44 1 3.0963 1.0090 2.3155 45 1 1.2877 4.7736 0.1679 46 1 1.4073 4.9963 1.9298 47 1 -1.0211 5.4875 2.0325 48 1 -1.1406 5.2649 0.2706 49 1 -2.9725 8.3974 0.8983 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096461870.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:33 Heat of formation + Delta-G solvation = -28.505205 kcal Electronic energy + Delta-G solvation = -31495.324509 eV Core-core repulsion = 27549.819808 eV Total energy + Delta-G solvation = -3945.504701 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.68167 -37.79873 -36.54272 -36.29957 -35.33379 -33.80861 -33.26368 -31.04363 -30.84633 -30.24473 -28.58711 -26.28998 -25.73979 -25.46733 -23.01113 -21.73527 -21.63980 -20.86274 -20.56029 -18.37268 -17.66455 -17.12510 -16.72406 -16.23482 -16.03621 -15.45365 -15.20737 -14.94808 -14.64883 -14.49715 -14.28324 -14.16905 -13.73554 -13.49653 -13.36283 -13.21820 -12.78059 -12.54521 -12.46496 -12.24062 -12.19596 -11.89989 -11.72627 -11.62596 -11.58036 -11.41545 -11.37283 -11.13785 -11.00460 -10.95542 -10.76033 -10.68647 -10.65784 -10.28982 -10.27568 -9.89261 -9.66144 -9.26512 -8.80238 -8.71598 -8.43220 -7.69363 -6.05507 -4.09951 0.87149 1.36553 1.42183 3.10645 3.31457 3.35565 3.38101 3.39003 3.78799 4.35726 4.44735 4.49716 4.62379 4.70668 4.79642 4.83981 4.96108 5.04928 5.12517 5.16382 5.16553 5.21265 5.29503 5.32513 5.38380 5.44397 5.51336 5.55402 5.59169 5.62457 5.78387 5.82698 5.84387 5.92703 5.99092 6.06836 6.08673 6.22475 6.32678 6.50900 6.59486 6.64334 6.65822 6.72415 6.77682 6.93787 7.24903 7.38636 7.45315 7.88401 8.26849 8.93234 9.53946 11.05701 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.009105 B = 0.004820 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.578794 B = 5807.952001 C = 7437.695393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.158 3.842 4 H 0.099 0.901 5 C 0.053 3.947 6 N -0.499 5.499 7 C 0.027 3.973 8 C 0.149 3.851 9 C -0.180 4.180 10 C -0.088 4.088 11 C -0.151 4.151 12 C -0.079 4.079 13 C -0.149 4.149 14 C 0.160 3.840 15 N -0.990 5.990 16 S 2.589 3.411 17 O -0.969 6.969 18 O -0.957 6.957 19 C -0.582 4.582 20 C 0.031 3.969 21 C -0.515 4.515 22 H 0.060 0.940 23 C 0.058 3.942 24 N -0.892 5.892 25 Si 0.898 3.102 26 H -0.285 1.285 27 H -0.275 1.275 28 H -0.276 1.276 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.127 0.873 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.120 0.880 46 H 0.116 0.884 47 H 0.028 0.972 48 H 0.033 0.967 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.031 -14.668 -0.580 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C 0.050 3.950 4 H 0.117 0.883 5 C -0.074 4.074 6 N -0.211 5.211 7 C -0.119 4.119 8 C 0.050 3.950 9 C -0.201 4.201 10 C -0.107 4.107 11 C -0.170 4.170 12 C -0.099 4.099 13 C -0.154 4.154 14 C 0.034 3.966 15 N -0.823 5.823 16 S 2.689 3.311 17 O -0.960 6.960 18 O -0.947 6.947 19 C -0.715 4.715 20 C -0.008 4.008 21 C -0.554 4.554 22 H 0.078 0.922 23 C -0.144 4.144 24 N -0.531 5.531 25 Si 0.725 3.275 26 H -0.211 1.211 27 H -0.201 1.201 28 H -0.201 1.201 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.145 0.855 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.145 0.855 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.138 0.862 46 H 0.134 0.866 47 H 0.046 0.954 48 H 0.051 0.949 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.601 -14.831 -0.697 22.272 hybrid contribution 1.300 1.325 0.029 1.856 sum 17.901 -13.506 -0.668 22.434 Atomic orbital electron populations 1.21888 0.94219 1.00891 1.03624 1.21903 0.97643 0.95735 1.01940 1.21030 0.93238 0.93564 0.87135 0.88349 1.22784 0.95512 0.86554 1.02539 1.57371 1.33376 1.20261 1.10097 1.22612 0.89762 1.03339 0.96196 1.18726 0.93130 0.95701 0.87437 1.21530 0.99416 1.00201 0.98963 1.20893 0.98919 0.98214 0.92664 1.21007 0.97746 0.99563 0.98681 1.20983 0.96777 0.95251 0.96843 1.19603 1.01477 1.01813 0.92553 1.19943 0.90089 0.96516 0.90044 1.57686 1.39941 1.67045 1.17620 1.05745 0.73248 0.77776 0.74314 1.93513 1.79721 1.85588 1.37145 1.93570 1.66378 1.79546 1.55228 1.30403 1.11135 1.19621 1.10379 1.18928 0.88758 0.94622 0.98497 1.20967 0.93307 0.90687 1.50446 0.92184 1.25053 0.94898 0.99385 0.95107 1.69951 0.99999 1.33561 1.49572 0.86559 0.77966 0.84109 0.78822 1.21092 1.20098 1.20123 0.93426 0.93438 0.90232 0.91101 0.91897 0.92113 0.89235 0.90636 0.90258 0.94140 0.85515 0.86310 0.86011 0.85473 0.88497 0.89533 0.86209 0.86602 0.95357 0.94902 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.23 37.16 0.31 -1.71 16 2 C -0.13 -1.40 5.64 -26.73 -0.15 -1.55 16 3 C 0.16 1.89 2.27 -68.00 -0.15 1.73 16 4 H 0.10 1.30 7.63 -51.93 -0.40 0.90 16 5 C 0.05 0.50 4.74 -3.44 -0.02 0.49 16 6 N -0.50 -5.54 4.40 -178.21 -0.78 -6.32 16 7 C 0.03 0.22 8.33 60.07 0.50 0.72 16 8 C 0.15 1.87 5.85 -83.31 -0.49 1.38 16 9 C -0.18 -2.11 8.73 -39.09 -0.34 -2.45 16 10 C -0.09 -1.00 10.01 -39.80 -0.40 -1.40 16 11 C -0.15 -1.76 10.07 -39.61 -0.40 -2.16 16 12 C -0.08 -0.98 9.57 -39.56 -0.38 -1.36 16 13 C -0.15 -1.92 5.54 -104.95 -0.58 -2.50 16 14 C 0.16 1.99 5.31 -5.62 -0.03 1.96 16 15 N -0.99 -14.20 2.29 -109.25 -0.25 -14.45 16 16 S 2.59 49.76 4.64 -107.50 -0.50 49.26 16 17 O -0.97 -20.92 16.90 -57.54 -0.97 -21.90 16 18 O -0.96 -19.81 13.16 -57.54 -0.76 -20.56 16 19 C -0.58 -12.35 6.12 37.16 0.23 -12.13 16 20 C 0.03 0.83 4.98 -27.88 -0.14 0.69 16 21 C -0.51 -14.80 9.11 -34.44 -0.31 -15.12 16 22 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 23 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 24 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 25 Si 0.90 21.83 29.54 -169.99 -5.02 16.80 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.75 6.32 -51.93 -0.33 0.42 16 31 H 0.08 1.20 6.97 -51.93 -0.36 0.84 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.53 5.97 -51.93 -0.31 0.22 16 35 H 0.09 0.62 7.38 -51.93 -0.38 0.24 16 36 H 0.07 0.49 7.60 -51.93 -0.39 0.10 16 37 H 0.08 0.66 6.63 -51.93 -0.34 0.31 16 38 H 0.04 0.29 7.79 -51.93 -0.40 -0.11 16 39 H 0.13 1.24 5.43 -52.49 -0.28 0.96 16 40 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 42 H 0.13 1.39 7.87 -52.49 -0.41 0.98 16 43 H 0.10 1.25 6.79 -51.93 -0.35 0.90 16 44 H 0.09 0.85 6.50 -51.93 -0.34 0.52 16 45 H 0.12 2.42 8.14 -51.92 -0.42 2.00 16 46 H 0.12 2.38 8.14 -51.93 -0.42 1.95 16 47 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 387.54 15.07 5.84 5.84 Total: -1.00 -35.02 387.54 -11.82 -46.84 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.66 Total: 2.75 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: -2.45 Total: -31.82 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -0.30 Total: -47.22 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -1.73 Total: -42.46 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 49.76 SS G_CDS: -0.50 Total: 49.26 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.02 -11.82 -46.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096461870.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.336 kcal (2) G-P(sol) polarization free energy of solvation -35.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds