Wall clock time and date at job start Tue Mar 31 2020 05:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47007 * 2 1 4 4 H 1.09004 * 109.79453 * 54.17771 * 3 2 1 5 5 C 1.54214 * 109.80367 * 174.99446 * 3 2 1 6 6 N 1.46452 * 108.99695 * 179.97438 * 5 3 2 7 7 C 1.46905 * 110.99697 * 38.49350 * 6 5 3 8 8 C 1.40085 * 114.97431 * 271.46248 * 6 5 3 9 9 C 1.40204 * 115.33684 * 211.40762 * 8 6 5 10 10 C 1.37557 * 120.87696 * 182.31750 * 9 8 6 11 11 C 1.38323 * 120.14007 * 0.27698 * 10 9 8 12 12 C 1.38077 * 119.49305 * 358.85523 * 11 10 9 13 13 C 1.38325 * 126.32443 * 31.90224 * 8 6 5 14 14 C 1.50305 * 121.01145 * 353.49794 * 13 8 6 15 15 N 1.45202 * 109.80506 * 293.29559 * 3 2 1 16 16 S 1.65597 * 121.39024 * 92.12526 * 15 3 2 17 17 O 1.42104 * 104.27601 * 213.98814 * 16 15 3 18 18 O 1.42100 * 104.27553 * 341.84375 * 16 15 3 19 19 C 1.81400 * 104.45244 * 97.91806 * 16 15 3 20 20 C 1.52997 * 109.47292 * 172.28827 * 19 16 15 21 21 C 1.50701 * 109.47267 * 180.02562 * 20 19 16 22 22 H 1.07998 * 119.99524 * 0.02562 * 21 20 19 23 23 C 1.37876 * 120.00007 * 179.97438 * 21 20 19 24 24 N 1.31519 * 119.99917 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99961 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47199 * 90.00251 * 25 23 21 27 27 H 1.48505 * 109.47011 * 210.00104 * 25 23 21 28 28 H 1.48493 * 109.47087 * 329.99990 * 25 23 21 29 29 H 1.09005 * 109.46901 * 60.00365 * 1 2 3 30 30 H 1.09001 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47315 * 300.00098 * 1 2 3 32 32 H 1.09005 * 109.46901 * 119.99635 * 2 1 3 33 33 H 1.08997 * 109.47315 * 239.99902 * 2 1 3 34 34 H 1.08994 * 109.55129 * 299.84417 * 5 3 2 35 35 H 1.08995 * 109.54550 * 60.03641 * 5 3 2 36 36 H 1.08995 * 109.46920 * 62.43488 * 7 6 5 37 37 H 1.08994 * 109.46544 * 182.43199 * 7 6 5 38 38 H 1.09002 * 109.47013 * 302.43389 * 7 6 5 39 39 H 1.07998 * 119.56251 * 2.33974 * 9 8 6 40 40 H 1.08002 * 119.93031 * 180.25191 * 10 9 8 41 41 H 1.07993 * 120.25462 * 178.83477 * 11 10 9 42 42 H 1.07999 * 119.73194 * 179.85010 * 12 11 10 43 43 H 1.08997 * 109.38949 * 168.40704 * 14 13 8 44 44 H 1.08998 * 109.38924 * 288.20583 * 14 13 8 45 45 H 1.09004 * 109.47157 * 292.29155 * 19 16 15 46 46 H 1.09006 * 109.46734 * 52.28756 * 19 16 15 47 47 H 1.09000 * 109.46924 * 299.99905 * 20 19 16 48 48 H 1.08998 * 109.47299 * 59.99594 * 20 19 16 49 49 H 0.96991 * 119.99712 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9906 0.8316 5 6 3.5769 1.4533 0.1266 6 7 4.0456 2.8408 0.1242 7 6 3.1308 3.7068 0.8799 8 6 4.3088 3.3739 -1.1442 9 6 5.3332 4.3300 -1.1925 10 6 5.6542 4.9618 -2.3714 11 6 4.9610 4.6633 -3.5305 12 6 3.9623 3.7103 -3.4990 13 6 3.6545 3.0528 -2.3199 14 6 2.6413 1.9435 -2.3641 15 7 1.6946 2.0864 -1.2548 16 16 0.2892 2.9455 -1.4252 17 8 -0.0983 2.7197 -2.7736 18 8 -0.5236 2.5054 -0.3459 19 6 0.7836 4.6744 -1.1860 20 6 -0.3973 5.5920 -1.5091 21 6 0.0137 7.0283 -1.3110 22 1 1.0169 7.2631 -0.9874 23 6 -0.8908 8.0425 -1.5439 24 7 -0.5320 9.2960 -1.3715 25 14 -2.6254 7.6363 -2.1056 26 1 -3.5021 7.4633 -0.9196 27 1 -3.1450 8.7435 -2.9480 28 1 -2.6081 6.3792 -2.8960 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 3.8694 0.9709 1.0591 35 1 4.0158 0.9172 -0.7148 36 1 3.1043 3.3863 1.9213 37 1 3.4792 4.7381 0.8258 38 1 2.1301 3.6384 0.4531 39 1 5.8778 4.5733 -0.2921 40 1 6.4488 5.6930 -2.3919 41 1 5.1988 5.1718 -4.4531 42 1 3.4169 3.4759 -4.4012 43 1 2.1001 1.9853 -3.3093 44 1 3.1515 0.9839 -2.2814 45 1 1.0882 4.8252 -0.1503 46 1 1.6175 4.9086 -1.8477 47 1 -0.7018 5.4411 -2.5448 48 1 -1.2312 5.3576 -0.8475 49 1 -1.1684 10.0094 -1.5349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096461871.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:37 Heat of formation + Delta-G solvation = -19.356441 kcal Electronic energy + Delta-G solvation = -32003.461138 eV Core-core repulsion = 28058.353157 eV Total energy + Delta-G solvation = -3945.107981 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.85446 -38.05218 -36.81442 -35.87683 -35.44960 -33.98983 -33.35864 -31.52294 -30.92184 -30.34133 -28.51284 -26.35493 -25.99848 -25.61502 -23.03691 -22.23298 -21.47730 -20.74886 -20.36777 -18.56269 -17.86991 -17.21345 -16.91582 -16.42472 -16.28669 -15.53881 -15.43158 -15.10185 -14.71201 -14.40996 -14.25821 -14.18662 -13.86549 -13.60194 -13.30530 -13.15723 -12.93778 -12.81457 -12.64634 -12.29909 -12.09116 -11.92994 -11.90411 -11.81153 -11.65099 -11.60179 -11.44608 -11.32270 -11.22422 -11.18236 -11.00693 -10.79394 -10.76707 -10.46616 -10.16214 -9.75995 -9.44880 -9.24073 -8.96094 -8.78699 -8.67000 -8.01080 -6.17200 -4.18105 0.56056 1.28187 1.39937 2.83122 3.24564 3.32160 3.36726 3.59189 3.79908 4.09169 4.28566 4.34724 4.42326 4.68677 4.80998 4.84456 4.92934 4.98851 5.09954 5.10764 5.13795 5.24846 5.28594 5.32162 5.38664 5.42488 5.52639 5.53645 5.54922 5.57501 5.62600 5.73144 5.83443 5.91332 5.95047 5.97093 6.02845 6.17140 6.27900 6.33309 6.47220 6.48036 6.55811 6.56650 6.71494 6.78971 6.88000 6.92075 7.37738 7.53555 8.36388 8.84288 9.42552 10.95205 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.009824 B = 0.005208 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.376479 B = 5375.046166 C = 6980.881002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.115 3.885 4 H 0.100 0.900 5 C 0.054 3.946 6 N -0.502 5.502 7 C 0.019 3.981 8 C 0.119 3.881 9 C -0.116 4.116 10 C -0.106 4.106 11 C -0.126 4.126 12 C -0.097 4.097 13 C -0.144 4.144 14 C 0.156 3.844 15 N -0.995 5.995 16 S 2.582 3.418 17 O -0.962 6.962 18 O -0.955 6.955 19 C -0.586 4.586 20 C -0.003 4.003 21 C -0.516 4.516 22 H 0.078 0.922 23 C 0.073 3.927 24 N -0.895 5.895 25 Si 0.866 3.134 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.262 1.262 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.032 0.968 48 H 0.024 0.976 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.260 -17.108 1.270 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C 0.007 3.993 4 H 0.117 0.883 5 C -0.075 4.075 6 N -0.219 5.219 7 C -0.126 4.126 8 C 0.024 3.976 9 C -0.135 4.135 10 C -0.125 4.125 11 C -0.144 4.144 12 C -0.116 4.116 13 C -0.148 4.148 14 C 0.030 3.970 15 N -0.829 5.829 16 S 2.682 3.318 17 O -0.952 6.952 18 O -0.946 6.946 19 C -0.719 4.719 20 C -0.042 4.042 21 C -0.555 4.555 22 H 0.096 0.904 23 C -0.130 4.130 24 N -0.533 5.533 25 Si 0.692 3.308 26 H -0.197 1.197 27 H -0.207 1.207 28 H -0.186 1.186 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.144 0.856 46 H 0.143 0.857 47 H 0.051 0.949 48 H 0.042 0.958 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.738 -17.356 1.352 20.996 hybrid contribution -1.060 0.526 -0.574 1.315 sum 10.677 -16.830 0.778 19.947 Atomic orbital electron populations 1.21875 0.94512 1.00583 1.03509 1.21872 0.97338 0.95618 1.02212 1.21720 0.96630 0.94519 0.86400 0.88266 1.22801 0.91983 0.89068 1.03630 1.58644 1.47117 1.02531 1.13602 1.22775 0.94220 0.97648 0.98005 1.18733 0.94681 0.96015 0.88201 1.21286 0.96838 0.97042 0.98326 1.20997 0.99684 0.99135 0.92647 1.21115 0.96707 0.98049 0.98562 1.21016 0.97411 0.96109 0.97080 1.20445 0.99245 1.00755 0.94349 1.20166 0.89525 0.96935 0.90340 1.57755 1.39616 1.67216 1.18303 1.05957 0.73499 0.77808 0.74585 1.93535 1.80325 1.85029 1.36298 1.93597 1.65209 1.79818 1.55958 1.30524 1.10961 1.19453 1.10950 1.19382 0.90809 0.96655 0.97387 1.20808 1.00488 0.87192 1.46974 0.90422 1.24961 0.98542 0.94892 0.94558 1.69878 1.35675 0.98944 1.48769 0.86978 0.85168 0.78930 0.79734 1.19668 1.20666 1.18637 0.93197 0.93395 0.91153 0.90877 0.91725 0.88859 0.89856 0.90370 0.90310 0.94642 0.85736 0.85979 0.85802 0.85584 0.88277 0.88879 0.85550 0.85660 0.94944 0.95824 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.35 37.16 0.31 -1.56 16 2 C -0.13 -1.30 5.63 -26.73 -0.15 -1.45 16 3 C 0.12 1.27 1.29 -67.99 -0.09 1.18 16 4 H 0.10 1.16 5.79 -51.93 -0.30 0.85 16 5 C 0.05 0.50 5.21 -3.43 -0.02 0.48 16 6 N -0.50 -5.58 4.52 -178.20 -0.81 -6.38 16 7 C 0.02 0.22 8.25 60.07 0.50 0.72 16 8 C 0.12 1.47 4.82 -83.31 -0.40 1.06 16 9 C -0.12 -1.39 9.47 -39.09 -0.37 -1.76 16 10 C -0.11 -1.21 10.01 -39.80 -0.40 -1.61 16 11 C -0.13 -1.46 10.07 -39.61 -0.40 -1.86 16 12 C -0.10 -1.18 9.58 -39.56 -0.38 -1.56 16 13 C -0.14 -1.78 5.09 -104.70 -0.53 -2.31 16 14 C 0.16 1.82 5.34 -5.36 -0.03 1.79 16 15 N -0.99 -13.15 1.69 -108.96 -0.18 -13.34 16 16 S 2.58 45.58 4.23 -107.50 -0.46 45.13 16 17 O -0.96 -19.45 16.90 -57.54 -0.97 -20.42 16 18 O -0.96 -17.90 13.30 -57.54 -0.76 -18.66 16 19 C -0.59 -11.31 5.31 37.16 0.20 -11.12 16 20 C 0.00 -0.07 4.05 -27.88 -0.11 -0.19 16 21 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 22 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 23 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 24 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 25 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 26 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 29 H 0.05 0.75 5.63 -51.93 -0.29 0.46 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.95 7.53 -51.93 -0.39 0.56 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.73 5.97 -51.93 -0.31 0.42 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.99 7.82 -51.93 -0.41 0.58 16 38 H 0.04 0.46 2.04 -51.93 -0.11 0.36 16 39 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.13 1.36 7.88 -52.49 -0.41 0.94 16 43 H 0.10 1.21 6.81 -51.93 -0.35 0.86 16 44 H 0.09 0.87 6.49 -51.93 -0.34 0.53 16 45 H 0.13 2.27 6.01 -51.92 -0.31 1.95 16 46 H 0.13 2.35 7.68 -51.92 -0.40 1.95 16 47 H 0.03 0.79 7.20 -51.93 -0.37 0.42 16 48 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 49 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 376.05 15.07 5.67 5.67 Total: -1.00 -33.25 376.05 -11.07 -44.32 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.36 Total: 3.96 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: -2.31 Total: -30.93 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.22 Total: -45.98 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -1.74 Total: -39.08 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 16 Polarization: 45.58 SS G_CDS: -0.46 Total: 45.13 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.25 -11.07 -44.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096461871.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.968 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds