Wall clock time and date at job start Tue Mar 31 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34511 * 125.78815 * 2 1 4 4 C 1.41387 * 106.84048 * 180.02562 * 3 2 1 5 5 S 1.76199 * 126.58062 * 180.02562 * 4 3 2 6 6 O 1.42098 * 106.39892 * 228.95848 * 5 4 3 7 7 O 1.42101 * 106.39921 * 1.87761 * 5 4 3 8 8 N 1.65599 * 107.21787 * 115.41854 * 5 4 3 9 9 C 1.46499 * 119.99841 * 111.89128 * 8 5 4 10 10 C 1.50703 * 109.46837 * 95.00247 * 9 8 5 11 11 H 1.07991 * 120.00009 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99616 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99790 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00540 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47068 * 89.99473 * 14 12 10 16 16 H 1.48493 * 109.47327 * 210.00046 * 14 12 10 17 17 H 1.48499 * 109.46640 * 330.00239 * 14 12 10 18 18 C 1.39822 * 119.99726 * 291.89291 * 8 5 4 19 19 C 1.38868 * 120.05133 * 333.32062 * 18 8 5 20 20 C 1.38129 * 119.95002 * 179.76873 * 19 18 8 21 21 C 1.38461 * 120.04947 * 0.48223 * 20 19 18 22 22 F 1.35093 * 119.95304 * 179.74762 * 21 20 19 23 23 C 1.38466 * 120.09677 * 359.76851 * 21 20 19 24 24 C 1.38116 * 120.05055 * 0.02562 * 23 21 20 25 25 C 1.34514 * 106.83888 * 0.02562 * 4 3 2 26 26 C 1.50694 * 125.78845 * 180.02562 * 25 4 3 27 27 O 1.34298 * 125.79011 * 179.69789 * 2 1 3 28 28 H 1.08994 * 109.47342 * 89.99098 * 1 2 3 29 29 H 1.08999 * 109.46703 * 329.99156 * 1 2 3 30 30 H 1.08998 * 109.47047 * 209.99612 * 1 2 3 31 31 H 1.08007 * 126.58354 * 359.97438 * 3 2 1 32 32 H 1.09007 * 109.47027 * 214.99582 * 9 8 5 33 33 H 1.08997 * 109.47639 * 334.99871 * 9 8 5 34 34 H 0.97004 * 119.99817 * 180.02562 * 13 12 10 35 35 H 1.08000 * 120.02545 * 359.97438 * 19 18 8 36 36 H 1.07994 * 119.97326 * 180.22954 * 20 19 18 37 37 H 1.07997 * 119.97469 * 179.97438 * 23 21 20 38 38 H 1.08005 * 120.02635 * 179.97438 * 24 23 21 39 39 H 1.09006 * 109.47484 * 84.75067 * 26 25 4 40 40 H 1.09003 * 109.47429 * 204.74649 * 26 25 4 41 41 H 1.09000 * 109.47704 * 324.74595 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 16 5.0835 1.6293 -0.0002 6 8 5.9206 1.1192 -1.0289 7 8 4.6431 2.9796 0.0454 8 7 5.8722 1.3461 1.4281 9 6 7.1612 0.6499 1.4274 10 6 8.2784 1.6614 1.4267 11 1 8.0509 2.7171 1.4263 12 6 9.5908 1.2390 1.4266 13 7 10.5657 2.1217 1.4265 14 14 9.9843 -0.5871 1.4280 15 1 10.0879 -1.0722 0.0283 16 1 11.2741 -0.8150 2.1277 17 1 8.9035 -1.3257 2.1290 18 6 5.3078 1.7713 2.6345 19 6 4.4416 2.8566 2.6527 20 6 3.8815 3.2719 3.8451 21 6 4.1909 2.6133 5.0231 22 9 3.6459 3.0243 6.1889 23 6 5.0584 1.5342 5.0080 24 6 5.6175 1.1128 3.8175 25 6 3.5814 -0.7122 -0.0015 26 6 4.7706 -1.6378 -0.0019 27 8 2.2924 -1.0894 0.0057 28 1 -0.3634 0.0002 -1.0276 29 1 -0.3633 0.8899 0.5140 30 1 -0.3633 -0.8900 0.5138 31 1 1.9666 2.1205 -0.0004 32 1 7.2373 0.0253 2.3176 33 1 7.2363 0.0250 0.5376 34 1 11.4891 1.8245 1.4260 35 1 4.2035 3.3734 1.7348 36 1 3.2049 4.1135 3.8591 37 1 5.2987 1.0222 5.9280 38 1 6.2944 0.2713 3.8062 39 1 5.1149 -1.7875 1.0215 40 1 4.4842 -2.5972 -0.4328 41 1 5.5729 -1.1985 -0.5945 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096493885.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:35 Heat of formation + Delta-G solvation = -64.805171 kcal Electronic energy + Delta-G solvation = -30114.808912 eV Core-core repulsion = 25810.718064 eV Total energy + Delta-G solvation = -4304.090847 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 353.093 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.57706 -42.85970 -39.19025 -37.03331 -35.61411 -35.44994 -33.58395 -33.22938 -32.59525 -30.90197 -29.82913 -29.33122 -27.21935 -25.04360 -23.35552 -22.61847 -22.48457 -21.29766 -21.06071 -18.84153 -17.57494 -17.47325 -17.20532 -16.87949 -16.64654 -16.31806 -15.65243 -15.31881 -15.25048 -14.89348 -14.29093 -14.22657 -13.96180 -13.77121 -13.61760 -13.53860 -13.08086 -13.05252 -13.00302 -12.88434 -12.65157 -12.61516 -12.25700 -12.13518 -11.90185 -11.70232 -11.63271 -11.45711 -11.28281 -11.09855 -10.76638 -10.61809 -10.43797 -10.18856 -9.81081 -9.27283 -8.83958 -8.72010 -8.57669 -7.55973 -6.20455 -4.23071 0.55996 1.28066 1.50441 1.53428 2.03840 2.57563 3.16429 3.19855 3.23316 3.29487 3.83654 4.05487 4.25992 4.29813 4.37496 4.59923 4.85946 4.93518 4.96327 5.02763 5.10812 5.11688 5.17330 5.26764 5.27423 5.32640 5.47260 5.54193 5.57663 5.68650 5.78508 5.96617 6.04244 6.23472 6.26042 6.34984 6.49886 6.55049 6.61270 6.76526 6.92712 6.93595 7.34964 7.39448 8.32198 8.84136 9.35607 10.92413 Molecular weight = 353.09amu Principal moments of inertia in cm(-1) A = 0.008437 B = 0.005630 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3317.876674 B = 4971.895099 C = 6914.283593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.028 4.028 3 C -0.128 4.128 4 C -0.763 4.763 5 S 2.715 3.285 6 O -0.937 6.937 7 O -0.953 6.953 8 N -0.919 5.919 9 C 0.209 3.791 10 C -0.543 4.543 11 H 0.082 0.918 12 C 0.080 3.920 13 N -0.887 5.887 14 Si 0.867 3.133 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.186 3.814 19 C -0.167 4.167 20 C -0.121 4.121 21 C 0.057 3.943 22 F -0.149 7.149 23 C -0.128 4.128 24 C -0.111 4.111 25 C 0.134 3.866 26 C -0.118 4.118 27 O -0.167 6.167 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.163 0.837 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.268 0.732 35 H 0.177 0.823 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.131 -7.047 1.064 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 C -0.147 4.147 4 C -0.849 4.849 5 S 2.805 3.195 6 O -0.927 6.927 7 O -0.944 6.944 8 N -0.745 5.745 9 C 0.088 3.912 10 C -0.582 4.582 11 H 0.100 0.900 12 C -0.124 4.124 13 N -0.524 5.524 14 Si 0.694 3.306 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.188 1.188 18 C 0.088 3.912 19 C -0.188 4.188 20 C -0.140 4.140 21 C 0.037 3.963 22 F -0.128 7.128 23 C -0.147 4.147 24 C -0.133 4.133 25 C 0.079 3.921 26 C -0.174 4.174 27 O -0.063 6.063 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.180 0.820 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.194 0.806 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.771 -6.826 0.321 19.040 hybrid contribution 0.001 -1.064 0.583 1.213 sum -17.770 -7.889 0.904 19.464 Atomic orbital electron populations 1.20306 0.84474 1.04259 1.03617 1.22520 0.94048 0.83601 1.07537 1.21107 0.89172 1.00151 1.04290 1.32020 1.19334 1.07420 1.26089 1.01446 0.71910 0.73767 0.72373 1.93579 1.65098 1.80745 1.53272 1.93373 1.82821 1.32641 1.85520 1.55348 1.30250 1.69917 1.18958 1.19924 0.78574 0.93912 0.98796 1.21257 0.89202 0.94731 1.52963 0.89977 1.24818 0.95948 0.97610 0.94065 1.69882 0.99672 1.33784 1.49047 0.86990 0.78652 0.85803 0.79204 1.19390 1.20701 1.18788 1.17569 0.93901 0.93135 0.86582 1.22182 0.99474 0.95904 1.01286 1.20876 1.01629 1.00718 0.90820 1.17637 0.99278 0.97977 0.81444 1.91440 1.84589 1.90048 1.46722 1.20898 0.97878 0.96960 0.99001 1.20861 1.01075 1.00842 0.90547 1.22304 0.83870 0.92664 0.93251 1.21041 0.91585 0.98937 1.05821 1.83951 1.16227 1.35832 1.70254 0.90007 0.89010 0.90503 0.81956 0.93759 0.93181 0.92227 0.80617 0.84775 0.84889 0.84225 0.87857 0.88731 0.86600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.42 36.01 0.38 -0.14 16 2 C -0.03 -0.34 7.32 -35.62 -0.26 -0.60 16 3 C -0.13 -1.76 10.53 -39.70 -0.42 -2.18 16 4 C -0.76 -12.07 6.19 -39.70 -0.25 -12.31 16 5 S 2.72 52.04 5.18 -107.50 -0.56 51.48 16 6 O -0.94 -20.08 15.10 -57.17 -0.86 -20.94 16 7 O -0.95 -19.21 14.25 -57.17 -0.81 -20.03 16 8 N -0.92 -18.05 2.98 -59.78 -0.18 -18.23 16 9 C 0.21 4.54 4.09 -5.19 -0.02 4.52 16 10 C -0.54 -14.64 9.92 -34.44 -0.34 -14.98 16 11 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 12 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 13 N -0.89 -26.19 13.96 55.43 0.77 -25.42 16 14 Si 0.87 19.59 27.47 -169.99 -4.67 14.92 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.26 -5.32 6.54 56.52 0.37 -4.95 16 18 C 0.19 3.40 6.22 -83.74 -0.52 2.87 16 19 C -0.17 -2.88 9.20 -39.39 -0.36 -3.25 16 20 C -0.12 -1.84 10.02 -39.54 -0.40 -2.24 16 21 C 0.06 0.87 7.30 -39.42 -0.29 0.59 16 22 F -0.15 -2.23 17.26 2.25 0.04 -2.19 16 23 C -0.13 -1.91 10.02 -39.54 -0.40 -2.30 16 24 C -0.11 -1.84 9.36 -39.39 -0.37 -2.21 16 25 C 0.13 1.91 7.32 -35.63 -0.26 1.65 16 26 C -0.12 -1.40 10.15 36.00 0.37 -1.03 16 27 O -0.17 -2.24 10.65 5.72 0.06 -2.18 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.16 1.95 8.06 -52.48 -0.42 1.53 16 32 H 0.04 0.88 5.11 -51.93 -0.27 0.61 16 33 H 0.05 1.05 6.31 -51.93 -0.33 0.72 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.18 3.11 4.64 -52.59 -0.24 2.87 16 36 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.14 2.17 6.24 -52.48 -0.33 1.84 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.12 1.53 6.53 -51.93 -0.34 1.19 16 LS Contribution 361.19 15.07 5.44 5.44 Total: -1.00 -33.06 361.19 -8.48 -41.53 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -4.48 Total: 5.14 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: -3.24 Total: -29.53 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.60 Total: -43.65 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -1.62 Total: -43.14 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.67 Total: 14.92 kcal Atomic # 16 Polarization: 52.04 SS G_CDS: -0.56 Total: 51.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.06 -8.48 -41.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096493885.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.271 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds