Wall clock time and date at job start Tue Mar 31 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31930 * 119.02898 * 2 1 4 4 C 1.32139 * 121.05392 * 180.02562 * 3 2 1 5 5 C 1.38948 * 119.13140 * 359.71929 * 4 3 2 6 6 Br 1.89100 * 120.88599 * 180.27522 * 5 4 3 7 7 C 1.39609 * 118.23003 * 0.53754 * 5 4 3 8 8 C 1.48393 * 120.55522 * 179.73464 * 7 5 4 9 9 O 1.21484 * 119.99821 * 5.62651 * 8 7 5 10 10 N 1.34776 * 119.99865 * 185.61920 * 8 7 5 11 11 C 1.46495 * 120.00196 * 185.20154 * 10 8 7 12 12 C 1.50698 * 109.47362 * 270.00861 * 11 10 8 13 13 H 1.08000 * 120.00138 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99909 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00207 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99660 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46886 * 90.00278 * 16 14 12 18 18 H 1.48506 * 109.47086 * 209.99856 * 16 14 12 19 19 H 1.48496 * 109.47459 * 329.99790 * 16 14 12 20 20 C 1.46500 * 119.99754 * 5.20683 * 10 8 7 21 21 C 1.52999 * 109.47519 * 275.65675 * 20 10 8 22 22 C 1.52999 * 117.50044 * 243.75127 * 21 20 10 23 23 C 1.52997 * 117.50206 * 175.09041 * 21 20 10 24 24 N 1.31528 * 119.02282 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.47245 * 269.98414 * 1 2 3 26 26 H 1.09000 * 109.46963 * 29.98213 * 1 2 3 27 27 H 1.08997 * 109.47641 * 149.98435 * 1 2 3 28 28 H 1.07995 * 120.43654 * 179.97438 * 4 3 2 29 29 H 1.09006 * 109.46628 * 30.00664 * 11 10 8 30 30 H 1.08998 * 109.47217 * 150.00227 * 11 10 8 31 31 H 0.97000 * 119.99849 * 179.97438 * 15 14 12 32 32 H 1.09010 * 109.46945 * 155.66004 * 20 10 8 33 33 H 1.08997 * 109.47263 * 35.66681 * 20 10 8 34 34 H 1.09005 * 115.54514 * 29.42096 * 21 20 10 35 35 H 1.08996 * 117.49840 * 359.97438 * 22 21 20 36 36 H 1.09004 * 117.49528 * 145.02007 * 22 21 20 37 37 H 1.09002 * 117.49670 * 214.98462 * 23 21 20 38 38 H 1.09002 * 117.49576 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1471 1.1536 0.0000 4 6 3.4677 1.2003 -0.0005 5 6 4.1866 0.0112 0.0049 6 35 6.0776 0.0202 0.0122 7 6 3.4757 -1.1903 -0.0009 8 6 4.1913 -2.4903 -0.0014 9 8 5.4011 -2.5177 0.1063 10 7 3.4991 -3.6405 -0.1213 11 6 4.1908 -4.9269 -0.0077 12 6 4.6648 -5.3644 -1.3696 13 1 4.4700 -4.7462 -2.2335 14 6 5.3473 -6.5539 -1.5128 15 7 5.5850 -7.3064 -0.4608 16 14 5.9343 -7.0964 -3.2011 17 1 7.3016 -6.5698 -3.4427 18 1 5.9570 -8.5800 -3.2641 19 1 5.0109 -6.5711 -4.2387 20 6 2.0550 -3.6043 -0.3653 21 6 1.3164 -3.4530 0.9661 22 6 0.4013 -4.5996 1.4005 23 6 -0.2028 -3.2795 0.9154 24 7 2.1451 -1.1501 -0.0005 25 1 -0.3634 -0.0003 1.0277 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3634 -0.8898 -0.5140 28 1 3.9815 2.1501 -0.0009 29 1 5.0471 -4.8213 0.6585 30 1 3.5063 -5.6730 0.3959 31 1 6.0648 -8.1433 -0.5616 32 1 1.7451 -4.5304 -0.8496 33 1 1.8167 -2.7592 -1.0111 34 1 1.8584 -2.9184 1.7462 35 1 0.3251 -5.4615 0.7376 36 1 0.3408 -4.8190 2.4665 37 1 -0.6604 -2.6308 1.6624 38 1 -0.6761 -3.2726 -0.0665 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097102743.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:28 Heat of formation + Delta-G solvation = 73.827224 kcal Electronic energy + Delta-G solvation = -23673.758599 eV Core-core repulsion = 20179.127873 eV Total energy + Delta-G solvation = -3494.630726 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 353.048 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39371 -38.92762 -37.14012 -34.60919 -33.98585 -33.69427 -32.44676 -30.80135 -28.05429 -27.84338 -26.45934 -25.16019 -23.48932 -22.21668 -22.03154 -20.66437 -19.33594 -18.03012 -17.08178 -16.50935 -15.67703 -15.51278 -15.31291 -15.04717 -14.58004 -14.40924 -14.19537 -13.56456 -13.53261 -12.91694 -12.84492 -12.55201 -12.25241 -12.22592 -11.40785 -11.28982 -11.23015 -11.18151 -11.00197 -10.93659 -10.86543 -10.63120 -10.61226 -10.16260 -10.07980 -9.66154 -9.61209 -9.36367 -9.08516 -8.46989 -8.43504 -7.70783 -6.05115 -4.09679 0.36479 0.67149 1.55409 3.07464 3.31467 3.37401 3.38136 3.45237 3.74982 3.80394 3.89991 4.16989 4.40724 4.52063 4.60501 4.86174 5.08438 5.21521 5.26023 5.30068 5.36479 5.40467 5.56072 5.62506 5.80772 5.84555 6.05727 6.12646 6.18331 6.29188 6.37483 6.57053 6.67064 7.02461 7.37836 7.48159 7.79017 7.90623 8.19949 8.28071 8.76975 8.96845 9.55037 11.02940 Molecular weight = 353.05amu Principal moments of inertia in cm(-1) A = 0.009485 B = 0.005417 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.468751 B = 5167.762462 C = 7447.490382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.316 3.684 3 N -0.508 5.508 4 C 0.179 3.821 5 C -0.173 4.173 6 Br 0.020 6.980 7 C 0.172 3.828 8 C 0.540 3.460 9 O -0.495 6.495 10 N -0.565 5.565 11 C 0.248 3.752 12 C -0.525 4.525 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.147 3.853 21 C -0.128 4.128 22 C -0.188 4.188 23 C -0.174 4.174 24 N -0.466 5.466 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.179 0.821 29 H 0.044 0.956 30 H 0.038 0.962 31 H 0.263 0.737 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.621 16.625 2.558 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 N -0.223 5.223 4 C 0.009 3.991 5 C -0.259 4.259 6 Br 0.105 6.895 7 C 0.022 3.978 8 C 0.322 3.678 9 O -0.368 6.368 10 N -0.294 5.294 11 C 0.129 3.871 12 C -0.564 4.564 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.199 1.199 20 C 0.023 3.977 21 C -0.147 4.147 22 C -0.226 4.226 23 C -0.212 4.212 24 N -0.184 5.184 25 H 0.106 0.894 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.196 0.804 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.148 16.340 2.671 18.916 hybrid contribution 0.811 -0.311 -0.819 1.194 sum -8.337 16.029 1.852 18.162 Atomic orbital electron populations 1.20636 0.85074 1.04437 1.04117 1.23552 0.98629 0.83329 0.89587 1.68268 1.09184 1.30584 1.14254 1.23324 0.89289 0.97130 0.89326 1.23837 0.96162 0.97147 1.08738 1.96834 0.97084 1.98766 1.96809 1.22186 0.89579 0.95262 0.90790 1.17687 0.86838 0.82533 0.80722 1.90938 1.11796 1.85194 1.48912 1.48177 1.07970 1.07030 1.66258 1.19403 0.92858 0.76985 0.97829 1.21385 1.36392 1.05088 0.93528 0.92429 1.24902 0.95663 0.96344 0.96988 1.69928 1.41061 1.13308 1.28956 0.86516 0.79349 0.77546 0.84124 1.20517 1.21147 1.19946 1.21285 0.79593 1.02264 0.94540 1.22462 0.91624 1.00984 0.99674 1.23094 1.05446 0.92745 1.01266 1.22811 0.96202 1.00104 1.02043 1.69134 1.07576 1.28874 1.12794 0.89366 0.89630 0.89015 0.80391 0.93774 0.94376 0.92700 0.90594 0.89390 0.88983 0.88730 0.89582 0.89681 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.31 36.00 0.37 -0.33 16 2 C 0.32 3.90 7.64 -157.31 -1.20 2.70 16 3 N -0.51 -6.31 10.31 -10.71 -0.11 -6.42 16 4 C 0.18 2.17 11.10 -17.16 -0.19 1.98 16 5 C -0.17 -2.62 6.30 -38.81 -0.24 -2.86 16 6 Br 0.02 0.31 30.65 -68.01 -2.08 -1.77 16 7 C 0.17 2.95 6.58 -82.61 -0.54 2.40 16 8 C 0.54 11.41 7.61 -12.08 -0.09 11.32 16 9 O -0.49 -11.82 13.34 5.38 0.07 -11.75 16 10 N -0.56 -12.07 2.47 -175.97 -0.43 -12.50 16 11 C 0.25 6.37 5.10 -5.20 -0.03 6.34 16 12 C -0.53 -14.69 9.39 -34.44 -0.32 -15.02 16 13 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 14 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 16 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.15 2.53 5.25 -4.04 -0.02 2.51 16 21 C -0.13 -1.88 4.23 -90.62 -0.38 -2.26 16 22 C -0.19 -2.50 10.18 -26.70 -0.27 -2.78 16 23 C -0.17 -1.95 9.77 -26.70 -0.26 -2.21 16 24 N -0.47 -6.81 4.71 -7.31 -0.03 -6.84 16 25 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 0.71 7.65 -51.93 -0.40 0.31 16 28 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.04 1.27 7.50 -51.93 -0.39 0.88 16 30 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.08 1.35 7.76 -51.92 -0.40 0.95 16 33 H 0.09 1.43 5.78 -51.93 -0.30 1.13 16 34 H 0.09 1.49 7.87 -51.93 -0.41 1.09 16 35 H 0.09 1.29 8.03 -51.93 -0.42 0.88 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -31.40 342.10 -9.82 -41.22 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -4.82 Total: -1.85 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -3.29 Total: 3.48 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 0.16 Total: -51.26 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.07 Total: -11.75 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 35 Polarization: 0.31 SS G_CDS: -2.08 Total: -1.77 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.40 -9.82 -41.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097102743.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.050 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds