Wall clock time and date at job start Tue Mar 31 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46805 * 2 1 4 4 C 1.52994 * 109.47385 * 240.00276 * 2 1 3 5 5 C 1.53001 * 109.47169 * 119.99532 * 2 1 3 6 6 C 1.53009 * 109.46917 * 60.00544 * 5 2 1 7 7 S 1.81390 * 109.47314 * 179.97438 * 6 5 2 8 8 O 1.42103 * 110.54545 * 68.36916 * 7 6 5 9 9 O 1.42108 * 110.54308 * 291.62466 * 7 6 5 10 10 N 1.65593 * 104.45132 * 180.02562 * 7 6 5 11 11 C 1.29045 * 120.00237 * 180.02562 * 10 7 6 12 12 O 1.34920 * 119.99508 * 359.97438 * 11 10 7 13 13 C 1.50692 * 120.00373 * 179.97438 * 11 10 7 14 14 C 1.50703 * 109.47000 * 359.97438 * 13 11 10 15 15 C 1.37645 * 120.13007 * 265.30719 * 14 13 11 16 16 C 1.38606 * 120.24649 * 180.32491 * 15 14 13 17 17 C 1.38653 * 120.50471 * 359.65965 * 16 15 14 18 18 C 1.37600 * 120.24898 * 0.02562 * 17 16 15 19 19 C 1.40696 * 120.12867 * 84.99790 * 14 13 11 20 20 C 1.41400 * 120.24530 * 359.97438 * 19 14 13 21 21 H 1.08003 * 119.99719 * 25.87056 * 20 19 14 22 22 C 1.39939 * 120.00246 * 205.87678 * 20 19 14 23 23 N 1.30825 * 119.99860 * 16.30743 * 22 20 19 24 24 Si 1.86803 * 120.00158 * 196.30813 * 22 20 19 25 25 H 1.48504 * 109.47020 * 265.18449 * 24 22 20 26 26 H 1.48497 * 109.46981 * 25.18176 * 24 22 20 27 27 H 1.48498 * 109.47234 * 145.18564 * 24 22 20 28 28 H 1.08992 * 109.47426 * 299.99565 * 1 2 3 29 29 H 1.09003 * 109.47293 * 60.00177 * 1 2 3 30 30 H 1.09002 * 109.46669 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47216 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47050 * 299.99971 * 3 2 1 33 33 H 1.09008 * 109.46987 * 59.99786 * 3 2 1 34 34 H 1.09002 * 109.47057 * 299.99567 * 4 2 1 35 35 H 1.09003 * 109.47275 * 59.99536 * 4 2 1 36 36 H 1.08995 * 109.47435 * 180.02562 * 4 2 1 37 37 H 1.08992 * 109.47683 * 300.00745 * 5 2 1 38 38 H 1.08995 * 109.47221 * 179.97438 * 5 2 1 39 39 H 1.09000 * 109.46662 * 59.99352 * 6 5 2 40 40 H 1.08995 * 109.46678 * 300.00265 * 6 5 2 41 41 H 0.96699 * 114.00472 * 359.97438 * 12 11 10 42 42 H 1.09000 * 109.47297 * 240.00483 * 13 11 10 43 43 H 1.08997 * 109.47185 * 119.99782 * 13 11 10 44 44 H 1.07994 * 119.87429 * 0.02562 * 15 14 13 45 45 H 1.08002 * 119.74758 * 179.69746 * 16 15 14 46 46 H 1.07998 * 119.87893 * 180.02562 * 17 16 15 47 47 H 1.07997 * 120.12664 * 180.02562 * 18 17 16 48 48 H 0.97002 * 120.00042 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 2.0400 -0.7211 1.2493 6 6 1.5301 -2.1638 1.2493 7 16 2.1353 -3.0190 2.7300 8 8 1.5232 -2.4885 3.8976 9 8 3.5427 -3.2025 2.6597 10 7 1.5178 -4.5504 2.6041 11 6 1.7692 -5.4247 3.5193 12 8 2.5356 -5.0913 4.5784 13 6 1.2067 -6.8181 3.4051 14 6 0.3929 -6.9292 2.1416 15 6 -0.9688 -6.7309 2.1771 16 6 -1.7206 -6.8392 1.0177 17 6 -1.1112 -7.1409 -0.1906 18 6 0.2494 -7.3369 -0.2510 19 6 1.0228 -7.2298 0.9199 20 6 2.4218 -7.4286 0.8700 21 1 2.9513 -7.7639 1.7496 22 6 3.1203 -7.1909 -0.3191 23 7 2.5640 -6.4942 -1.2765 24 14 4.8472 -7.8684 -0.5394 25 1 5.8385 -6.8296 -0.1604 26 1 5.0250 -9.0616 0.3266 27 1 5.0509 -8.2524 -1.9593 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2492 35 1 1.6767 -0.2073 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 1.6767 -0.2074 2.1392 38 1 3.1300 -0.7216 1.2491 39 1 1.8935 -2.6775 0.3593 40 1 0.4402 -2.1637 1.2492 41 1 2.8504 -4.1771 4.5639 42 1 0.5707 -7.0249 4.2658 43 1 2.0241 -7.5386 3.3757 44 1 -1.4537 -6.4948 3.1127 45 1 -2.7891 -6.6867 1.0557 46 1 -1.7067 -7.2224 -1.0879 47 1 0.7220 -7.5714 -1.1933 48 1 3.0483 -6.3291 -2.1005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097138784.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:00 Heat of formation + Delta-G solvation = -91.559033 kcal Electronic energy + Delta-G solvation = -30681.047228 eV Core-core repulsion = 26635.089645 eV Total energy + Delta-G solvation = -4045.957582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.149 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.63561 -38.15630 -37.64828 -36.81092 -35.73168 -33.80230 -33.61669 -31.47261 -31.24332 -29.49855 -27.41091 -27.31952 -27.20750 -25.11196 -24.26379 -21.95897 -20.96868 -19.90858 -19.23772 -18.79898 -17.96796 -17.20533 -16.97118 -16.14320 -15.46598 -15.27671 -15.02644 -14.64458 -14.59617 -14.56196 -14.15604 -13.84203 -13.73851 -13.62115 -13.52687 -12.76221 -12.61114 -12.25700 -12.09467 -12.07825 -11.96621 -11.86254 -11.78811 -11.76603 -11.57630 -11.51337 -11.31126 -11.23756 -11.13306 -10.99426 -10.73509 -10.69838 -10.67734 -10.44212 -10.19301 -10.11661 -9.53450 -9.49892 -9.40618 -9.16122 -7.39279 -7.34061 -6.75765 -4.36504 0.49083 1.94639 2.70884 2.88872 3.08108 3.11445 3.11541 3.25977 3.51169 3.60946 3.93923 4.46876 4.51321 4.62269 4.65426 4.71080 5.08768 5.11913 5.38073 5.45704 5.50150 5.51366 5.54391 5.70294 5.72148 5.75253 5.80069 5.81654 5.89482 5.91218 5.97084 5.99679 6.09540 6.14597 6.23647 6.27503 6.29624 6.36032 6.48686 6.71269 7.07817 7.24547 7.37185 7.59810 7.68928 7.88000 7.99179 8.09376 8.27747 8.61057 8.87466 8.96341 10.18434 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.008583 B = 0.004413 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3261.464972 B = 6343.254162 C = 6723.267872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.059 4.059 3 C -0.143 4.143 4 C -0.150 4.150 5 C -0.104 4.104 6 C -0.575 4.575 7 S 2.513 3.487 8 O -0.993 6.993 9 O -0.982 6.982 10 N -0.945 5.945 11 C 0.506 3.494 12 O -0.507 6.507 13 C 0.002 3.998 14 C -0.183 4.183 15 C -0.072 4.072 16 C -0.242 4.242 17 C -0.102 4.102 18 C -0.161 4.161 19 C 0.139 3.861 20 C -0.461 4.461 21 H 0.076 0.924 22 C 0.082 3.918 23 N -0.789 5.789 24 Si 0.895 3.105 25 H -0.270 1.270 26 H -0.259 1.259 27 H -0.275 1.275 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.148 0.852 40 H 0.140 0.860 41 H 0.386 0.614 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.116 0.884 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.216 8.748 2.142 9.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.061 4.061 3 C -0.200 4.200 4 C -0.207 4.207 5 C -0.143 4.143 6 C -0.707 4.707 7 S 2.614 3.386 8 O -0.982 6.982 9 O -0.971 6.971 10 N -0.808 5.808 11 C 0.287 3.713 12 O -0.301 6.301 13 C -0.037 4.037 14 C -0.184 4.184 15 C -0.090 4.090 16 C -0.261 4.261 17 C -0.121 4.121 18 C -0.180 4.180 19 C 0.137 3.863 20 C -0.490 4.490 21 H 0.094 0.906 22 C -0.136 4.136 23 N -0.414 5.414 24 Si 0.719 3.281 25 H -0.195 1.195 26 H -0.183 1.183 27 H -0.200 1.200 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.166 0.834 40 H 0.159 0.841 41 H 0.243 0.757 42 H 0.115 0.885 43 H 0.131 0.869 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.134 0.866 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.996 8.735 2.234 9.071 hybrid contribution 1.059 0.816 -0.514 1.432 sum 0.062 9.551 1.720 9.705 Atomic orbital electron populations 1.21984 0.94260 1.02588 1.01745 1.20436 0.96042 0.95072 0.94503 1.21899 1.01130 0.95148 1.01873 1.21992 1.01193 1.01146 0.96379 1.21472 1.01358 0.91565 0.99868 1.29890 1.13231 1.07137 1.20481 1.07528 0.75216 0.78209 0.77684 1.93611 1.77691 1.81773 1.45139 1.93641 1.31262 1.85256 1.86949 1.73819 1.46621 1.21099 1.39237 1.24939 0.75287 0.95467 0.75594 1.85060 1.63642 1.35832 1.45615 1.19519 0.99889 0.85420 0.98920 1.18782 0.92469 1.13853 0.93329 1.20268 0.93335 0.99128 0.96290 1.20271 0.97233 1.15150 0.93483 1.20675 0.95213 1.00470 0.95719 1.21265 0.91867 1.05563 0.99340 1.17248 0.92710 0.86406 0.89971 1.19501 0.92609 1.40133 0.96783 0.90594 1.25796 0.99933 0.92666 0.95239 1.69818 1.38291 1.27561 1.05742 0.86496 0.82538 0.80470 0.78549 1.19504 1.18313 1.20047 0.92557 0.92454 0.91755 0.92494 0.92347 0.92560 0.91474 0.92507 0.92477 0.90561 0.90436 0.83429 0.84137 0.75657 0.88497 0.86931 0.89609 0.89758 0.89764 0.86605 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.12 37.16 0.30 -1.30 16 2 C -0.06 -0.66 0.80 -154.51 -0.12 -0.79 16 3 C -0.14 -1.34 8.47 37.16 0.31 -1.03 16 4 C -0.15 -1.76 8.12 37.15 0.30 -1.46 16 5 C -0.10 -1.33 4.28 -26.73 -0.11 -1.44 16 6 C -0.57 -8.67 5.47 37.16 0.20 -8.47 16 7 S 2.51 45.77 4.31 -107.50 -0.46 45.30 16 8 O -0.99 -18.98 17.07 -61.33 -1.05 -20.02 16 9 O -0.98 -20.24 17.07 -61.33 -1.05 -21.29 16 10 N -0.94 -19.18 9.57 32.46 0.31 -18.87 16 11 C 0.51 9.79 7.80 -13.45 -0.10 9.68 16 12 O -0.51 -9.03 13.48 -30.95 -0.42 -9.44 16 13 C 0.00 0.04 5.46 -29.04 -0.16 -0.12 16 14 C -0.18 -3.91 4.33 -103.91 -0.45 -4.36 16 15 C -0.07 -1.48 9.66 -39.66 -0.38 -1.86 16 16 C -0.24 -5.09 10.05 -39.29 -0.39 -5.49 16 17 C -0.10 -2.27 10.02 -39.66 -0.40 -2.67 16 18 C -0.16 -3.91 8.68 -38.87 -0.34 -4.25 16 19 C 0.14 3.35 5.56 -106.82 -0.59 2.75 16 20 C -0.46 -11.22 8.46 -37.74 -0.32 -11.53 16 21 H 0.08 1.76 6.36 -52.48 -0.33 1.43 16 22 C 0.08 1.96 5.16 -17.34 -0.09 1.88 16 23 N -0.79 -19.37 10.98 55.55 0.61 -18.76 16 24 Si 0.90 18.42 29.59 -169.99 -5.03 13.39 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 27 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 34 H 0.07 0.88 6.43 -51.93 -0.33 0.55 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.15 2.32 6.43 -51.92 -0.33 1.99 16 40 H 0.14 1.95 6.43 -51.93 -0.33 1.62 16 41 H 0.39 6.64 5.36 53.48 0.29 6.92 16 42 H 0.10 1.42 8.05 -51.93 -0.42 1.00 16 43 H 0.11 1.95 6.49 -51.93 -0.34 1.61 16 44 H 0.09 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.08 1.59 8.06 -52.49 -0.42 1.17 16 46 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 47 H 0.12 2.93 6.23 -52.49 -0.33 2.60 16 48 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 LS Contribution 397.79 15.07 5.99 5.99 Total: -1.00 -29.72 397.79 -10.11 -39.83 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -6.67 Total: 14.32 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: -2.35 Total: -30.46 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.92 Total: -37.63 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -2.51 Total: -50.75 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Atomic # 16 Polarization: 45.77 SS G_CDS: -0.46 Total: 45.30 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.72 -10.11 -39.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097138784.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.731 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds