Wall clock time and date at job start Tue Mar 31 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35901 * 116.99943 * 2 1 4 4 C 1.38771 * 120.17302 * 359.97438 * 3 2 1 5 5 C 1.37832 * 119.71262 * 180.11899 * 4 3 2 6 6 C 1.38966 * 120.62574 * 0.02562 * 5 4 3 7 7 C 1.37710 * 119.76740 * 359.80321 * 6 5 4 8 8 C 1.38424 * 120.17923 * 179.76891 * 3 2 1 9 9 C 1.50641 * 122.56907 * 180.29202 * 7 6 5 10 10 C 1.52737 * 110.59101 * 342.42697 * 9 7 6 11 11 C 1.53329 * 108.36781 * 51.08458 * 10 9 7 12 12 C 1.50649 * 117.68980 * 179.69140 * 6 5 4 13 13 H 1.08999 * 109.20735 * 282.80504 * 12 6 5 14 14 C 1.53000 * 109.26300 * 42.24880 * 12 6 5 15 15 N 1.46502 * 109.47204 * 185.21805 * 14 12 6 16 16 S 1.65595 * 119.99708 * 165.15982 * 15 14 12 17 17 O 1.42102 * 104.27782 * 181.07071 * 16 15 14 18 18 O 1.42096 * 104.28254 * 308.92807 * 16 15 14 19 19 C 1.81397 * 104.45215 * 65.00222 * 16 15 14 20 20 C 1.53002 * 109.47753 * 180.02562 * 19 16 15 21 21 C 1.50700 * 109.47481 * 179.97438 * 20 19 16 22 22 H 1.07993 * 119.99873 * 359.97438 * 21 20 19 23 23 C 1.37874 * 119.99566 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99406 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00454 * 359.97438 * 23 21 20 26 26 H 1.48508 * 109.46644 * 90.00053 * 25 23 21 27 27 H 1.48503 * 109.47331 * 209.99898 * 25 23 21 28 28 H 1.48495 * 109.47271 * 330.00384 * 25 23 21 29 29 H 1.09001 * 109.46885 * 299.99641 * 1 2 3 30 30 H 1.08993 * 109.47467 * 59.99916 * 1 2 3 31 31 H 1.09003 * 109.47022 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.14433 * 0.14171 * 4 3 2 33 33 H 1.07992 * 119.68415 * 179.97438 * 5 4 3 34 34 H 1.08007 * 119.74283 * 0.02562 * 8 3 2 35 35 H 1.08999 * 109.25552 * 102.71208 * 9 7 6 36 36 H 1.08997 * 109.25096 * 222.17924 * 9 7 6 37 37 H 1.08993 * 109.68300 * 170.80079 * 10 9 7 38 38 H 1.09001 * 109.68210 * 291.36155 * 10 9 7 39 39 H 1.08990 * 109.68797 * 49.78477 * 11 10 9 40 40 H 1.09001 * 109.68021 * 170.34798 * 11 10 9 41 41 H 1.08997 * 109.46966 * 305.22165 * 14 12 6 42 42 H 1.08996 * 109.47211 * 65.21669 * 14 12 6 43 43 H 0.96997 * 119.99981 * 345.15681 * 15 14 12 44 44 H 1.09009 * 109.46931 * 299.99767 * 19 16 15 45 45 H 1.09002 * 109.47241 * 59.99447 * 19 16 15 46 46 H 1.09009 * 109.46613 * 299.99840 * 20 19 16 47 47 H 1.09002 * 109.47297 * 59.99360 * 20 19 16 48 48 H 0.97004 * 119.99555 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2937 2.3770 -0.0005 5 6 1.9293 3.6000 -0.0030 6 6 3.3168 3.6768 -0.0055 7 6 4.0655 2.5210 -0.0014 8 6 3.4281 1.2877 0.0048 9 6 5.5719 2.5306 0.0027 10 6 6.1015 3.8963 -0.4300 11 6 5.4066 4.9729 0.4120 12 6 3.9421 5.0473 -0.0153 13 1 3.8819 5.4617 -1.0217 14 6 3.1803 5.9566 0.9510 15 7 3.7043 7.3212 0.8532 16 16 2.8483 8.5848 1.4959 17 8 3.6344 9.7297 1.1949 18 8 1.5415 8.4318 0.9593 19 6 2.8443 8.2671 3.2818 20 6 2.0735 9.3791 3.9961 21 6 2.0697 9.1147 5.4797 22 1 2.5669 8.2408 5.8737 23 6 1.4314 9.9887 6.3339 24 7 1.4285 9.7582 7.6287 25 14 0.5720 11.5008 5.6524 26 1 -0.8405 11.1674 5.3375 27 1 0.6104 12.5892 6.6619 28 1 1.2625 11.9476 4.4161 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2149 2.3264 0.0014 33 1 1.3434 4.5072 -0.0039 34 1 4.0151 0.3811 0.0082 35 1 5.9300 2.3082 1.0078 36 1 5.9380 1.7691 -0.6859 37 1 7.1782 3.9409 -0.2669 38 1 5.8825 4.0574 -1.4856 39 1 5.4680 4.7097 1.4678 40 1 5.8873 5.9368 0.2447 41 1 2.1213 5.9547 0.6931 42 1 3.3067 5.5910 1.9700 43 1 4.5526 7.4846 0.4121 44 1 2.3645 7.3083 3.4792 45 1 3.8704 8.2422 3.6487 46 1 2.5529 10.3380 3.7987 47 1 1.0474 9.4035 3.6291 48 1 0.9797 10.3733 8.2298 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097144917.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:40 Heat of formation + Delta-G solvation = -107.031334 kcal Electronic energy + Delta-G solvation = -29090.172105 eV Core-core repulsion = 25043.543593 eV Total energy + Delta-G solvation = -4046.628512 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.149 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.83095 -39.11697 -36.75512 -36.28602 -35.57361 -34.98592 -33.95264 -32.39043 -31.48617 -30.11334 -29.48517 -27.19057 -25.97519 -25.84913 -23.43990 -22.67165 -21.56227 -21.28281 -19.72445 -19.06243 -17.98448 -17.63270 -16.94985 -16.67612 -16.45731 -16.00397 -15.73845 -15.53140 -15.03513 -14.86574 -14.75700 -14.35129 -14.25851 -13.82217 -13.67730 -13.44417 -13.30067 -13.01007 -12.84391 -12.79893 -12.46320 -12.30746 -12.09764 -11.89381 -11.73645 -11.65771 -11.59299 -11.38066 -11.25997 -11.19597 -11.16155 -10.94561 -10.70014 -10.51450 -10.43092 -10.14831 -9.80215 -9.49439 -9.16697 -8.99758 -8.66772 -8.28599 -6.17041 -4.18279 0.66371 1.08545 1.18246 2.97640 3.02120 3.26094 3.33522 3.37736 3.46215 4.11289 4.31205 4.35384 4.37524 4.45816 4.57194 4.64053 4.68202 4.78328 4.84252 4.88612 4.89890 5.01620 5.13855 5.14647 5.15242 5.18540 5.23595 5.33201 5.46014 5.51813 5.52903 5.57437 5.60606 5.70019 5.70983 5.79428 5.82901 5.92307 6.08265 6.10641 6.21393 6.28189 6.41031 6.54604 6.81373 6.92103 7.03290 7.13059 7.54446 8.36177 8.84248 9.42669 10.95379 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.011595 B = 0.002558 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.299468 B =10943.607440 C =12080.082730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.125 3.875 4 C -0.206 4.206 5 C -0.079 4.079 6 C -0.107 4.107 7 C -0.032 4.032 8 C -0.157 4.157 9 C -0.082 4.082 10 C -0.119 4.119 11 C -0.119 4.119 12 C -0.047 4.047 13 H 0.089 0.911 14 C 0.118 3.882 15 N -1.125 6.125 16 S 2.591 3.409 17 O -0.967 6.967 18 O -0.967 6.967 19 C -0.583 4.583 20 C -0.007 4.007 21 C -0.519 4.519 22 H 0.078 0.922 23 C 0.071 3.929 24 N -0.896 5.896 25 Si 0.870 3.130 26 H -0.271 1.271 27 H -0.282 1.282 28 H -0.262 1.262 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.413 0.587 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.032 0.968 47 H 0.028 0.972 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.516 -19.016 -18.625 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.080 3.920 4 C -0.225 4.225 5 C -0.096 4.096 6 C -0.108 4.108 7 C -0.032 4.032 8 C -0.175 4.175 9 C -0.119 4.119 10 C -0.156 4.156 11 C -0.156 4.156 12 C -0.067 4.067 13 H 0.107 0.893 14 C -0.008 4.008 15 N -0.883 5.883 16 S 2.689 3.311 17 O -0.958 6.958 18 O -0.957 6.957 19 C -0.716 4.716 20 C -0.046 4.046 21 C -0.558 4.558 22 H 0.096 0.904 23 C -0.131 4.131 24 N -0.534 5.534 25 Si 0.696 3.304 26 H -0.197 1.197 27 H -0.208 1.208 28 H -0.186 1.186 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.247 0.753 44 H 0.142 0.858 45 H 0.145 0.855 46 H 0.051 0.949 47 H 0.046 0.954 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.964 -18.473 -18.894 26.886 hybrid contribution -0.351 0.452 0.239 0.620 sum 4.613 -18.021 -18.655 26.345 Atomic orbital electron populations 1.23060 0.78289 1.03894 1.01554 1.86050 1.21463 1.27021 1.88827 1.18926 0.92331 0.84141 0.96585 1.21197 1.00156 0.92274 1.08825 1.21148 0.94052 0.97585 0.96860 1.19329 0.93046 0.93922 1.04468 1.19359 0.95491 0.91271 0.97095 1.20348 0.91333 0.98047 1.07807 1.20509 0.90564 0.98355 1.02441 1.21545 0.99889 0.94053 1.00142 1.21666 0.93985 0.99320 1.00672 1.20134 0.94940 0.91522 1.00062 0.89256 1.21494 0.98529 0.80956 0.99868 1.55731 1.37312 1.20497 1.74801 1.05533 0.73921 0.73036 0.78654 1.93561 1.70234 1.47758 1.84209 1.93540 1.39471 1.85600 1.77110 1.30293 1.10490 1.10308 1.20520 1.19409 0.94755 0.92005 0.98470 1.20852 1.35945 1.11074 0.87964 0.90420 1.24989 0.95592 0.97802 0.94751 1.69886 1.43496 1.37595 1.02400 0.86921 0.80792 0.83118 0.79589 1.19682 1.20768 1.18598 0.92451 0.92628 0.88302 0.85352 0.85056 0.85435 0.90157 0.90610 0.91139 0.91515 0.90838 0.91019 0.89932 0.91195 0.75330 0.85767 0.85460 0.94932 0.95386 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.82 101.05 0.99 1.16 16 2 O -0.32 -3.15 10.50 -19.43 -0.20 -3.35 16 3 C 0.13 1.29 6.68 -39.32 -0.26 1.03 16 4 C -0.21 -2.02 9.04 -39.53 -0.36 -2.38 16 5 C -0.08 -0.79 9.02 -39.46 -0.36 -1.15 16 6 C -0.11 -1.04 5.43 -104.57 -0.57 -1.61 16 7 C -0.03 -0.30 5.74 -104.62 -0.60 -0.90 16 8 C -0.16 -1.53 9.55 -39.29 -0.38 -1.91 16 9 C -0.08 -0.58 5.67 -28.05 -0.16 -0.74 16 10 C -0.12 -0.79 5.98 -26.70 -0.16 -0.94 16 11 C -0.12 -0.91 4.99 -26.70 -0.13 -1.04 16 12 C -0.05 -0.42 2.36 -91.93 -0.22 -0.64 16 13 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 14 C 0.12 1.24 5.16 -4.04 -0.02 1.22 16 15 N -1.13 -13.09 5.76 -10.61 -0.06 -13.16 16 16 S 2.59 42.47 5.46 -107.50 -0.59 41.88 16 17 O -0.97 -18.57 18.08 -57.54 -1.04 -19.62 16 18 O -0.97 -18.43 17.50 -57.54 -1.01 -19.44 16 19 C -0.58 -10.43 6.01 37.16 0.22 -10.21 16 20 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 21 C -0.52 -14.45 9.66 -34.44 -0.33 -14.78 16 22 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 23 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 24 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 25 Si 0.87 21.44 27.47 -169.99 -4.67 16.77 16 26 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 28 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 29 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 30 H 0.06 0.30 7.67 -51.93 -0.40 -0.10 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.13 1.03 6.33 -52.49 -0.33 0.70 16 33 H 0.13 1.23 6.26 -52.49 -0.33 0.90 16 34 H 0.13 1.08 8.05 -52.48 -0.42 0.66 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.45 8.13 -51.93 -0.42 0.03 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 39 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 40 H 0.07 0.49 7.09 -51.93 -0.37 0.12 16 41 H 0.08 0.90 5.72 -51.93 -0.30 0.61 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.41 3.94 7.43 -34.47 -0.26 3.69 16 44 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 45 H 0.13 2.07 8.14 -51.92 -0.42 1.65 16 46 H 0.03 0.77 7.20 -51.92 -0.37 0.39 16 47 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 392.67 15.07 5.92 5.92 Total: -1.00 -35.73 392.67 -10.79 -46.52 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.37 Total: 1.93 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: -2.54 Total: -31.19 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.71 Total: -39.42 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -2.25 Total: -42.40 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 42.47 SS G_CDS: -0.59 Total: 41.88 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.73 -10.79 -46.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097144917.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.514 kcal (2) G-P(sol) polarization free energy of solvation -35.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds