Wall clock time and date at job start Tue Mar 31 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35892 * 117.00138 * 2 1 4 4 C 1.38762 * 120.17477 * 359.97438 * 3 2 1 5 5 C 1.37832 * 119.70982 * 179.91704 * 4 3 2 6 6 C 1.38962 * 120.63108 * 359.97438 * 5 4 3 7 7 C 1.37710 * 119.76517 * 0.18629 * 6 5 4 8 8 C 1.38427 * 120.17758 * 179.97438 * 3 2 1 9 9 C 1.50640 * 122.56410 * 179.68712 * 7 6 5 10 10 C 1.52733 * 110.59560 * 17.53954 * 9 7 6 11 11 C 1.53323 * 108.36832 * 308.93169 * 10 9 7 12 12 C 1.50649 * 117.68883 * 180.25237 * 6 5 4 13 13 H 1.08997 * 109.22759 * 77.23034 * 12 6 5 14 14 C 1.53000 * 109.25077 * 317.78572 * 12 6 5 15 15 N 1.46497 * 109.47302 * 175.53096 * 14 12 6 16 16 S 1.65600 * 120.00168 * 164.41087 * 15 14 12 17 17 O 1.42104 * 104.27774 * 308.92861 * 16 15 14 18 18 O 1.42108 * 104.27946 * 181.07057 * 16 15 14 19 19 C 1.81405 * 104.44993 * 65.00039 * 16 15 14 20 20 C 1.52994 * 109.47051 * 180.02562 * 19 16 15 21 21 C 1.50698 * 109.47271 * 179.97438 * 20 19 16 22 22 H 1.08002 * 119.99688 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00282 * 179.97438 * 21 20 19 24 24 N 1.31511 * 120.00268 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99977 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46858 * 180.02562 * 25 23 21 27 27 H 1.48504 * 109.46949 * 299.99721 * 25 23 21 28 28 H 1.48501 * 109.47233 * 59.99857 * 25 23 21 29 29 H 1.08998 * 109.47142 * 59.99323 * 1 2 3 30 30 H 1.08999 * 109.47351 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46605 * 300.00064 * 1 2 3 32 32 H 1.08000 * 120.14703 * 359.93291 * 4 3 2 33 33 H 1.08004 * 119.68698 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.74001 * 0.02562 * 8 3 2 35 35 H 1.08999 * 109.25550 * 257.24742 * 9 7 6 36 36 H 1.09008 * 109.21861 * 137.80487 * 9 7 6 37 37 H 1.09001 * 109.68385 * 189.20736 * 10 9 7 38 38 H 1.09001 * 109.68253 * 68.65252 * 10 9 7 39 39 H 1.08998 * 109.68461 * 310.22177 * 11 10 9 40 40 H 1.08999 * 109.71516 * 189.68112 * 11 10 9 41 41 H 1.09001 * 109.47112 * 55.53062 * 14 12 6 42 42 H 1.08999 * 109.47250 * 295.53343 * 14 12 6 43 43 H 0.97002 * 119.99841 * 344.41004 * 15 14 12 44 44 H 1.09002 * 109.47084 * 60.00089 * 19 16 15 45 45 H 1.08996 * 109.46866 * 300.00060 * 19 16 15 46 46 H 1.08999 * 109.47639 * 60.00137 * 20 19 16 47 47 H 1.09004 * 109.47290 * 300.00114 * 20 19 16 48 48 H 0.97001 * 119.99908 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2938 2.3769 -0.0005 5 6 1.9295 3.5998 0.0012 6 6 3.3170 3.6765 0.0040 7 6 4.0657 2.5207 0.0012 8 6 3.4281 1.2875 0.0005 9 6 5.5720 2.5303 -0.0029 10 6 6.1017 3.8967 0.4274 11 6 5.4065 4.9719 -0.4161 12 6 3.9423 5.0471 0.0117 13 1 3.8826 5.4633 1.0173 14 6 3.1801 5.9547 -0.9559 15 7 3.7158 7.3157 -0.8735 16 16 3.3639 8.4173 -2.0588 17 8 3.6868 7.7455 -3.2687 18 8 4.0607 9.5913 -1.6643 19 6 1.5719 8.6664 -1.9277 20 6 1.1186 9.6758 -2.9843 21 6 -0.3702 9.8823 -2.8759 22 1 -0.9366 9.3467 -2.1283 23 6 -1.0093 10.7548 -3.7309 24 7 -0.3198 11.4066 -4.6416 25 14 -2.8548 11.0112 -3.5959 26 1 -3.2947 11.9909 -4.6216 27 1 -3.5516 9.7184 -3.8159 28 1 -3.1852 11.5277 -2.2434 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 0.2150 2.3264 -0.0020 33 1 1.3437 4.5072 0.0012 34 1 4.0150 0.3809 0.0005 35 1 5.9301 2.3061 -1.0077 36 1 5.9376 1.7696 0.6869 37 1 7.1785 3.9411 0.2640 38 1 5.8830 4.0595 1.4827 39 1 5.4676 4.7069 -1.4716 40 1 5.8872 5.9362 -0.2513 41 1 2.1232 5.9636 -0.6895 42 1 3.2953 5.5798 -1.9729 43 1 4.2767 7.5716 -0.1246 44 1 1.3294 9.0455 -0.9349 45 1 1.0604 7.7175 -2.0892 46 1 1.3610 9.2963 -3.9770 47 1 1.6301 10.6248 -2.8233 48 1 0.6385 11.2737 -4.7114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097144919.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:44 Heat of formation + Delta-G solvation = -115.063113 kcal Electronic energy + Delta-G solvation = -29092.800047 eV Core-core repulsion = 25045.823252 eV Total energy + Delta-G solvation = -4046.976796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.84308 -39.12291 -36.72156 -36.26482 -35.52496 -34.99947 -34.26418 -32.40273 -31.03956 -30.11479 -29.49298 -27.20097 -25.83270 -25.08193 -23.45158 -22.65710 -21.99041 -21.55324 -19.79892 -19.03209 -17.98537 -17.61320 -16.83342 -16.63663 -16.33940 -16.01390 -15.85423 -15.67876 -15.13065 -14.83250 -14.74831 -14.37034 -13.85354 -13.79581 -13.62716 -13.42182 -13.25249 -12.90169 -12.85394 -12.83970 -12.55450 -12.33641 -12.12960 -12.02700 -11.68843 -11.62772 -11.57110 -11.39613 -11.14929 -11.04471 -10.91747 -10.68485 -10.60421 -10.54994 -10.50890 -10.33079 -10.08225 -9.37864 -9.01526 -8.66923 -8.47238 -8.30428 -6.48640 -4.21521 0.69452 1.06690 1.16463 2.96092 3.05534 3.37414 3.39285 3.44371 3.58547 4.15057 4.29991 4.37791 4.45851 4.50702 4.54346 4.61266 4.71484 4.78259 4.82630 4.87702 4.88855 4.99206 5.12362 5.14156 5.21192 5.23290 5.27116 5.32563 5.44638 5.53064 5.55885 5.57829 5.59463 5.70213 5.71932 5.79382 5.84147 5.92188 6.08504 6.11748 6.20411 6.32536 6.39767 6.52576 6.95637 7.01005 7.08048 7.11382 7.95272 8.28376 8.71584 9.50888 10.91267 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.002711 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.399329 B =10324.652975 C =12718.765569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.125 3.875 4 C -0.206 4.206 5 C -0.079 4.079 6 C -0.106 4.106 7 C -0.032 4.032 8 C -0.156 4.156 9 C -0.082 4.082 10 C -0.119 4.119 11 C -0.118 4.118 12 C -0.046 4.046 13 H 0.088 0.912 14 C 0.119 3.881 15 N -1.125 6.125 16 S 2.593 3.407 17 O -0.966 6.966 18 O -0.968 6.968 19 C -0.584 4.584 20 C 0.015 3.985 21 C -0.601 4.601 22 H 0.055 0.945 23 C 0.016 3.984 24 N -0.905 5.905 25 Si 1.073 2.927 26 H -0.280 1.280 27 H -0.287 1.287 28 H -0.286 1.286 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.413 0.587 44 H 0.122 0.878 45 H 0.119 0.881 46 H 0.024 0.976 47 H 0.024 0.976 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.839 -22.432 13.782 27.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.080 3.920 4 C -0.225 4.225 5 C -0.097 4.097 6 C -0.107 4.107 7 C -0.032 4.032 8 C -0.175 4.175 9 C -0.119 4.119 10 C -0.156 4.156 11 C -0.155 4.155 12 C -0.065 4.065 13 H 0.106 0.894 14 C -0.008 4.008 15 N -0.883 5.883 16 S 2.691 3.309 17 O -0.955 6.955 18 O -0.958 6.958 19 C -0.717 4.717 20 C -0.024 4.024 21 C -0.640 4.640 22 H 0.073 0.927 23 C -0.189 4.189 24 N -0.540 5.540 25 Si 0.900 3.100 26 H -0.205 1.205 27 H -0.213 1.213 28 H -0.213 1.213 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.246 0.754 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.042 0.958 47 H 0.042 0.958 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.198 -21.487 12.367 25.816 hybrid contribution 0.465 -0.886 1.378 1.703 sum 7.663 -22.373 13.745 27.353 Atomic orbital electron populations 1.23062 0.78275 1.03907 1.01553 1.86048 1.21467 1.27012 1.88824 1.18918 0.92324 0.84149 0.96598 1.21192 1.00144 0.92294 1.08853 1.21110 0.93995 0.97505 0.97057 1.19339 0.93040 0.93971 1.04380 1.19367 0.95528 0.91279 0.96999 1.20350 0.91336 0.98047 1.07771 1.20515 0.90558 0.98380 1.02447 1.21555 0.99917 0.94070 1.00105 1.21641 0.93894 0.99367 1.00627 1.20125 0.95142 0.91533 0.99744 0.89379 1.21477 0.97043 0.81189 1.01043 1.55747 1.66130 1.23008 1.43428 1.05515 0.78861 0.73047 0.73519 1.93547 1.83149 1.74066 1.44778 1.93558 1.71843 1.47991 1.82404 1.30334 1.21261 1.09974 1.10152 1.19062 0.99661 0.92087 0.91608 1.21838 0.91375 1.29490 1.21295 0.92707 1.25970 1.07151 0.92977 0.92791 1.70781 1.09807 1.40553 1.32891 0.83489 0.73725 0.76501 0.76257 1.20532 1.21303 1.21287 0.92459 0.88287 0.92624 0.85352 0.85202 0.85420 0.90170 0.90594 0.91172 0.91528 0.90920 0.90951 0.91523 0.89845 0.75398 0.85971 0.86254 0.95753 0.95772 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.82 101.05 0.99 1.16 16 2 O -0.32 -3.14 10.50 -19.40 -0.20 -3.34 16 3 C 0.13 1.29 6.68 -39.32 -0.26 1.03 16 4 C -0.21 -2.00 9.04 -39.54 -0.36 -2.36 16 5 C -0.08 -0.77 9.02 -39.46 -0.36 -1.13 16 6 C -0.11 -1.05 5.43 -104.57 -0.57 -1.62 16 7 C -0.03 -0.30 5.74 -104.63 -0.60 -0.90 16 8 C -0.16 -1.54 9.55 -39.29 -0.38 -1.91 16 9 C -0.08 -0.61 5.67 -28.05 -0.16 -0.77 16 10 C -0.12 -0.86 5.98 -26.70 -0.16 -1.01 16 11 C -0.12 -1.04 5.00 -26.70 -0.13 -1.17 16 12 C -0.05 -0.42 2.28 -91.94 -0.21 -0.63 16 13 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 14 C 0.12 1.30 5.15 -4.04 -0.02 1.28 16 15 N -1.13 -13.64 5.48 -10.61 -0.06 -13.70 16 16 S 2.59 44.81 5.46 -107.50 -0.59 44.22 16 17 O -0.97 -19.58 17.49 -57.54 -1.01 -20.59 16 18 O -0.97 -19.55 18.08 -57.54 -1.04 -20.59 16 19 C -0.58 -11.01 6.01 37.15 0.22 -10.78 16 20 C 0.01 0.37 4.29 -27.89 -0.12 0.25 16 21 C -0.60 -16.75 9.11 -34.44 -0.31 -17.07 16 22 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 23 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 24 N -0.91 -27.66 13.65 55.43 0.76 -26.90 16 25 Si 1.07 24.72 29.90 -169.99 -5.08 19.64 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 29 H 0.06 0.33 7.67 -51.93 -0.40 -0.06 16 30 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.30 7.67 -51.93 -0.40 -0.10 16 32 H 0.13 1.02 6.33 -52.49 -0.33 0.69 16 33 H 0.13 1.12 6.26 -52.48 -0.33 0.79 16 34 H 0.13 1.09 8.05 -52.49 -0.42 0.67 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.47 8.12 -51.92 -0.42 0.05 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 39 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.07 0.61 7.69 -51.93 -0.40 0.21 16 41 H 0.07 0.64 6.20 -51.93 -0.32 0.32 16 42 H 0.08 1.02 7.68 -51.93 -0.40 0.62 16 43 H 0.41 4.09 8.29 -34.47 -0.29 3.81 16 44 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 45 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 46 H 0.02 0.64 8.01 -51.93 -0.42 0.22 16 47 H 0.02 0.64 8.01 -51.93 -0.42 0.22 16 48 H 0.27 8.25 7.22 -40.82 -0.29 7.95 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -36.66 396.09 -11.18 -47.84 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.41 Total: 2.71 kcal Atomic # 6 Polarization: -32.75 SS G_CDS: -2.52 Total: -35.27 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.70 Total: -40.60 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -2.25 Total: -44.51 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.08 Total: 19.64 kcal Atomic # 16 Polarization: 44.81 SS G_CDS: -0.59 Total: 44.22 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.66 -11.18 -47.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097144919.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.218 kcal (2) G-P(sol) polarization free energy of solvation -36.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds