Wall clock time and date at job start Tue Mar 31 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99730 * 2 1 4 4 C 1.50700 * 109.46936 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00208 * 90.00116 * 4 3 2 6 6 C 1.38229 * 120.00091 * 179.97438 * 5 4 3 7 7 C 1.38233 * 120.00193 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00061 * 179.97438 * 7 6 5 9 9 N 1.46503 * 109.46956 * 90.00368 * 8 7 6 10 10 C 1.38107 * 119.99962 * 180.02562 * 9 8 7 11 11 N 1.32858 * 120.81448 * 359.97323 * 10 9 8 12 12 C 1.32123 * 121.19451 * 180.02562 * 11 10 9 13 13 N 1.31510 * 122.64648 * 0.02562 * 12 11 10 14 14 C 1.33199 * 120.68256 * 0.02562 * 13 12 11 15 15 C 1.40818 * 120.81214 * 179.97438 * 10 9 8 16 16 C 1.41168 * 134.69640 * 0.03213 * 15 10 9 17 17 N 1.30249 * 108.46928 * 180.20253 * 16 15 10 18 18 N 1.36308 * 134.61923 * 179.97438 * 14 13 12 19 19 C 1.46510 * 125.87260 * 0.07553 * 18 14 13 20 20 C 1.50695 * 109.46809 * 90.00139 * 19 18 14 21 21 H 1.07999 * 120.00635 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99588 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99888 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99924 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47128 * 59.99465 * 24 22 20 26 26 H 1.48495 * 109.47062 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46817 * 299.99843 * 24 22 20 28 28 C 1.38235 * 119.99912 * 0.25341 * 7 6 5 29 29 C 1.38234 * 119.99937 * 359.46778 * 28 7 6 30 30 H 1.09001 * 109.47286 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47032 * 299.99827 * 1 2 3 32 32 H 1.08997 * 109.47677 * 59.99537 * 1 2 3 33 33 H 1.08999 * 109.46944 * 60.00269 * 3 2 1 34 34 H 1.08996 * 109.47086 * 300.00640 * 3 2 1 35 35 H 1.08002 * 119.99800 * 359.97438 * 5 4 3 36 36 H 1.08000 * 120.00319 * 179.97438 * 6 5 4 37 37 H 1.08999 * 109.47480 * 330.00090 * 8 7 6 38 38 H 1.09004 * 109.47245 * 209.99738 * 8 7 6 39 39 H 0.97007 * 119.99894 * 359.97438 * 9 8 7 40 40 H 1.08001 * 118.67993 * 179.97438 * 12 11 10 41 41 H 1.08002 * 125.76328 * 359.93061 * 16 15 10 42 42 H 1.08997 * 109.46820 * 210.00471 * 19 18 14 43 43 H 1.08996 * 109.46904 * 330.00105 * 19 18 14 44 44 H 0.97001 * 119.99480 * 180.02562 * 23 22 20 45 45 H 1.07998 * 119.99803 * 179.73000 * 28 7 6 46 46 H 1.07997 * 120.00265 * 180.29729 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2010 1.1322 -1.1980 6 6 5.5791 1.0236 -1.1986 7 6 6.2686 0.9688 -0.0017 8 6 7.7709 0.8499 -0.0024 9 7 8.3667 2.1883 -0.0023 10 6 9.7402 2.3327 -0.0033 11 7 10.5363 1.2691 -0.0039 12 6 11.8512 1.3985 -0.0044 13 7 12.4488 2.5700 -0.0039 14 6 11.7372 3.6960 -0.0022 15 6 10.3311 3.6109 -0.0038 16 6 9.8368 4.9332 -0.0028 17 7 10.8496 5.7522 -0.0083 18 7 12.0458 5.0236 -0.0009 19 6 13.3966 5.5910 -0.0024 20 6 13.8571 5.7876 -1.4238 21 1 13.2085 5.5174 -2.2439 22 6 15.1067 6.3125 -1.6771 23 7 15.8964 6.6420 -0.6784 24 14 15.6774 6.5569 -3.4390 25 1 14.7505 7.4848 -4.1353 26 1 17.0465 7.1318 -3.4405 27 1 15.6886 5.2486 -4.1416 28 6 5.5796 1.0173 1.1957 29 6 4.2020 1.1317 1.1963 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.6623 1.1746 -2.1331 36 1 6.1170 0.9808 -2.1341 37 1 8.0922 0.3092 -0.8926 38 1 8.0929 0.3088 0.8874 39 1 7.7964 2.9730 -0.0022 40 1 12.4599 0.5063 -0.0045 41 1 8.7950 5.2177 -0.0025 42 1 13.3878 6.5515 0.5129 43 1 14.0771 4.9105 0.5092 44 1 16.7753 7.0116 -0.8567 45 1 6.1180 0.9701 2.1307 46 1 3.6641 1.1745 2.1318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:39 Heat of formation + Delta-G solvation = 97.146637 kcal Electronic energy + Delta-G solvation = -28870.344491 eV Core-core repulsion = 24761.711352 eV Total energy + Delta-G solvation = -4108.633140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.36160 -40.03892 -38.49483 -38.06940 -36.30607 -33.83960 -33.14005 -31.76553 -31.31996 -31.24942 -29.79249 -28.11757 -27.22229 -26.42908 -24.51486 -23.90760 -23.21757 -23.12001 -22.18315 -21.13987 -20.08602 -18.03071 -17.39364 -16.99861 -16.80002 -16.64803 -16.56024 -16.36529 -15.65111 -15.46899 -15.02017 -14.96217 -14.61237 -14.44180 -14.11288 -13.89176 -13.71689 -13.69107 -13.32386 -12.93240 -12.91642 -12.66408 -12.62629 -12.12477 -11.89127 -11.64844 -11.44521 -11.35265 -11.15643 -10.96740 -10.93822 -10.73190 -10.27254 -10.21691 -10.07097 -9.83498 -9.28324 -9.23383 -9.19538 -8.63798 -8.57418 -8.20043 -7.61632 -6.20273 -4.26801 0.74786 1.05372 1.33015 1.96401 2.89772 3.01914 3.09855 3.27560 3.30496 3.34837 3.35941 3.72600 4.29006 4.32576 4.36642 4.42562 4.47335 4.64318 4.66464 4.70503 4.76814 4.80168 4.86690 4.91586 5.00331 5.10859 5.15112 5.18102 5.18156 5.20438 5.41255 5.42400 5.57312 5.68906 5.71166 5.74444 5.98774 6.17973 6.25241 6.33422 6.57138 6.62166 6.69853 6.92927 7.04846 7.12540 7.26399 7.52112 7.73743 7.92207 7.94464 8.25028 8.73319 8.84868 9.38104 10.87893 Molecular weight = 353.16amu Principal moments of inertia in cm(-1) A = 0.022051 B = 0.001706 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.455674 B =16413.006140 C =16742.634342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.101 3.899 4 C -0.088 4.088 5 C -0.101 4.101 6 C -0.101 4.101 7 C -0.100 4.100 8 C 0.173 3.827 9 N -0.703 5.703 10 C 0.509 3.491 11 N -0.619 5.619 12 C 0.367 3.633 13 N -0.554 5.554 14 C 0.363 3.637 15 C -0.338 4.338 16 C 0.068 3.932 17 N -0.243 5.243 18 N -0.332 5.332 19 C 0.264 3.736 20 C -0.535 4.535 21 H 0.061 0.939 22 C 0.067 3.933 23 N -0.891 5.891 24 Si 0.907 3.093 25 H -0.275 1.275 26 H -0.283 1.283 27 H -0.274 1.274 28 C -0.101 4.101 29 C -0.101 4.101 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.410 0.590 40 H 0.195 0.805 41 H 0.182 0.818 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.268 0.732 45 H 0.127 0.873 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.758 -13.212 3.020 31.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.305 6.305 3 C 0.025 3.975 4 C -0.088 4.088 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.101 4.101 8 C 0.049 3.951 9 N -0.337 5.337 10 C 0.257 3.743 11 N -0.349 5.349 12 C 0.073 3.927 13 N -0.279 5.279 14 C 0.115 3.885 15 C -0.355 4.355 16 C -0.127 4.127 17 N -0.059 5.059 18 N -0.119 5.119 19 C 0.147 3.853 20 C -0.573 4.573 21 H 0.079 0.921 22 C -0.136 4.136 23 N -0.529 5.529 24 Si 0.734 3.266 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.200 1.200 28 C -0.119 4.119 29 C -0.119 4.119 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.246 0.754 40 H 0.211 0.789 41 H 0.199 0.801 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.145 0.855 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -27.313 -12.805 3.074 30.322 hybrid contribution -0.771 0.604 -0.986 1.389 sum -28.084 -12.201 2.089 30.691 Atomic orbital electron populations 1.22776 0.80829 1.02986 1.00076 1.87982 1.19725 1.27339 1.95419 1.21369 0.89917 0.85188 1.01056 1.19610 0.93952 1.01519 0.93712 1.21043 0.94192 0.99111 0.97518 1.21133 0.94017 0.98866 0.97901 1.20017 0.95332 1.01223 0.93482 1.20152 0.86976 0.84459 1.03492 1.44337 1.02000 1.08342 1.79002 1.17895 0.84932 0.87140 0.84363 1.67940 1.06528 1.30863 1.29613 1.24412 0.86711 0.93864 0.87713 1.67519 1.40372 0.96417 1.23612 1.18935 0.88509 0.87659 0.93351 1.19610 0.95907 0.94401 1.25614 1.23363 0.98832 0.89023 1.01450 1.76940 0.90157 1.20585 1.18228 1.49465 1.07280 0.99809 1.55328 1.19785 0.70844 0.95503 0.99141 1.21217 1.01175 1.43771 0.91155 0.92109 1.24892 0.95897 0.94708 0.98120 1.69911 1.09624 1.42305 1.31063 0.86404 0.77733 0.78677 0.83785 1.20048 1.20879 1.19961 1.21123 0.94016 0.98940 0.97850 1.21041 0.94190 0.99151 0.97506 0.89442 0.93951 0.93951 0.92303 0.92307 0.85804 0.85447 0.90471 0.90472 0.75375 0.78850 0.80144 0.92832 0.92238 0.92219 0.85467 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -3.11 10.69 -35.23 -0.38 -3.49 16 3 C 0.10 0.65 6.06 36.01 0.22 0.87 16 4 C -0.09 -0.68 5.51 -104.62 -0.58 -1.26 16 5 C -0.10 -0.77 9.70 -39.59 -0.38 -1.15 16 6 C -0.10 -0.80 9.70 -39.59 -0.38 -1.18 16 7 C -0.10 -0.82 5.25 -104.62 -0.55 -1.37 16 8 C 0.17 1.62 5.86 -5.19 -0.03 1.59 16 9 N -0.70 -7.80 5.67 -61.26 -0.35 -8.15 16 10 C 0.51 7.83 7.55 -154.85 -1.17 6.66 16 11 N -0.62 -9.80 9.69 -13.62 -0.13 -9.93 16 12 C 0.37 6.18 12.24 -92.11 -1.13 5.05 16 13 N -0.55 -11.75 10.47 -13.97 -0.15 -11.90 16 14 C 0.36 8.07 8.04 -156.24 -1.26 6.82 16 15 C -0.34 -6.16 6.14 -106.82 -0.66 -6.81 16 16 C 0.07 1.17 11.87 -17.11 -0.20 0.97 16 17 N -0.24 -5.25 12.45 30.80 0.38 -4.86 16 18 N -0.33 -8.03 3.63 -61.64 -0.22 -8.25 16 19 C 0.26 7.11 6.19 -5.19 -0.03 7.07 16 20 C -0.53 -15.39 9.39 -34.44 -0.32 -15.71 16 21 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 22 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 23 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 24 Si 0.91 21.81 29.54 -169.99 -5.02 16.79 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 28 C -0.10 -0.78 9.70 -39.58 -0.38 -1.17 16 29 C -0.10 -0.76 9.70 -39.58 -0.38 -1.14 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.06 0.30 8.09 -51.93 -0.42 -0.11 16 34 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 38 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 39 H 0.41 3.85 8.33 -40.82 -0.34 3.51 16 40 H 0.20 2.46 8.06 -52.49 -0.42 2.04 16 41 H 0.18 2.12 8.06 -52.49 -0.42 1.70 16 42 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 401.97 15.07 6.06 6.06 Total: -1.00 -34.28 401.97 -11.51 -45.79 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.22 Total: 0.81 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -6.23 Total: 2.28 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: 0.27 Total: -68.25 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: -0.38 Total: -3.49 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.28 -11.51 -45.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.934 kcal (2) G-P(sol) polarization free energy of solvation -34.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds