Wall clock time and date at job start Tue Mar 31 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99730 * 2 1 4 4 C 1.50700 * 109.46936 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00208 * 90.00116 * 4 3 2 6 6 C 1.38229 * 120.00091 * 179.97438 * 5 4 3 7 7 C 1.38233 * 120.00193 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00061 * 179.97438 * 7 6 5 9 9 N 1.46503 * 109.46956 * 90.00368 * 8 7 6 10 10 C 1.38107 * 119.99962 * 180.02562 * 9 8 7 11 11 N 1.32858 * 120.81448 * 359.97323 * 10 9 8 12 12 C 1.32123 * 121.19451 * 180.02562 * 11 10 9 13 13 N 1.31510 * 122.64648 * 0.02562 * 12 11 10 14 14 C 1.33199 * 120.68256 * 0.02562 * 13 12 11 15 15 C 1.40818 * 120.81214 * 179.97438 * 10 9 8 16 16 C 1.41168 * 134.69640 * 0.03213 * 15 10 9 17 17 N 1.30249 * 108.46928 * 180.20253 * 16 15 10 18 18 N 1.36308 * 134.61923 * 179.97438 * 14 13 12 19 19 C 1.46510 * 125.87260 * 0.07553 * 18 14 13 20 20 C 1.50695 * 109.46809 * 90.00139 * 19 18 14 21 21 H 1.07999 * 120.00635 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99588 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99888 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99924 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47128 * 59.99465 * 24 22 20 26 26 H 1.48495 * 109.47062 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46817 * 299.99843 * 24 22 20 28 28 C 1.38235 * 119.99912 * 0.25341 * 7 6 5 29 29 C 1.38234 * 119.99937 * 359.46778 * 28 7 6 30 30 H 1.09001 * 109.47286 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47032 * 299.99827 * 1 2 3 32 32 H 1.08997 * 109.47677 * 59.99537 * 1 2 3 33 33 H 1.08999 * 109.46944 * 60.00269 * 3 2 1 34 34 H 1.08996 * 109.47086 * 300.00640 * 3 2 1 35 35 H 1.08002 * 119.99800 * 359.97438 * 5 4 3 36 36 H 1.08000 * 120.00319 * 179.97438 * 6 5 4 37 37 H 1.08999 * 109.47480 * 330.00090 * 8 7 6 38 38 H 1.09004 * 109.47245 * 209.99738 * 8 7 6 39 39 H 0.97007 * 119.99894 * 359.97438 * 9 8 7 40 40 H 1.08001 * 118.67993 * 179.97438 * 12 11 10 41 41 H 1.08002 * 125.76328 * 359.93061 * 16 15 10 42 42 H 1.08997 * 109.46820 * 210.00471 * 19 18 14 43 43 H 1.08996 * 109.46904 * 330.00105 * 19 18 14 44 44 H 0.97001 * 119.99480 * 180.02562 * 23 22 20 45 45 H 1.07998 * 119.99803 * 179.73000 * 28 7 6 46 46 H 1.07997 * 120.00265 * 180.29729 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2010 1.1322 -1.1980 6 6 5.5791 1.0236 -1.1986 7 6 6.2686 0.9688 -0.0017 8 6 7.7709 0.8499 -0.0024 9 7 8.3667 2.1883 -0.0023 10 6 9.7402 2.3327 -0.0033 11 7 10.5363 1.2691 -0.0039 12 6 11.8512 1.3985 -0.0044 13 7 12.4488 2.5700 -0.0039 14 6 11.7372 3.6960 -0.0022 15 6 10.3311 3.6109 -0.0038 16 6 9.8368 4.9332 -0.0028 17 7 10.8496 5.7522 -0.0083 18 7 12.0458 5.0236 -0.0009 19 6 13.3966 5.5910 -0.0024 20 6 13.8571 5.7876 -1.4238 21 1 13.2085 5.5174 -2.2439 22 6 15.1067 6.3125 -1.6771 23 7 15.8964 6.6420 -0.6784 24 14 15.6774 6.5569 -3.4390 25 1 14.7505 7.4848 -4.1353 26 1 17.0465 7.1318 -3.4405 27 1 15.6886 5.2486 -4.1416 28 6 5.5796 1.0173 1.1957 29 6 4.2020 1.1317 1.1963 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.6623 1.1746 -2.1331 36 1 6.1170 0.9808 -2.1341 37 1 8.0922 0.3092 -0.8926 38 1 8.0929 0.3088 0.8874 39 1 7.7964 2.9730 -0.0022 40 1 12.4599 0.5063 -0.0045 41 1 8.7950 5.2177 -0.0025 42 1 13.3878 6.5515 0.5129 43 1 14.0771 4.9105 0.5092 44 1 16.7753 7.0116 -0.8567 45 1 6.1180 0.9701 2.1307 46 1 3.6641 1.1745 2.1318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:38 Heat of formation + Delta-G solvation = 76.823745 kcal Electronic energy + Delta-G solvation = -28871.225758 eV Core-core repulsion = 24761.711352 eV Total energy + Delta-G solvation = -4109.514406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.80749 -40.64506 -39.80867 -38.65601 -37.35820 -35.73980 -34.30100 -33.20783 -32.67832 -31.87764 -30.97311 -29.27207 -28.67517 -27.02836 -25.62697 -25.22832 -24.80480 -23.68195 -23.51232 -21.77614 -21.56119 -19.42685 -18.80590 -18.66780 -17.85755 -17.44165 -17.26873 -17.08993 -16.83932 -16.65203 -16.30540 -15.90988 -15.66111 -15.36391 -15.12232 -15.06480 -14.98917 -14.88086 -14.38796 -14.21689 -13.79077 -13.70871 -13.54497 -13.20746 -13.12340 -13.04437 -12.74396 -12.42105 -12.37875 -12.31417 -12.27875 -11.92524 -11.91942 -11.77987 -11.50757 -10.75413 -10.65327 -10.61194 -10.11123 -9.84192 -9.76465 -9.71704 -8.98359 -8.34945 -6.52180 -0.02561 0.14461 0.48783 0.53827 1.33191 1.37801 1.40191 1.49200 1.64016 2.05387 2.32172 2.67751 2.94708 3.02530 3.20584 3.29262 3.41058 3.62984 3.73461 3.84553 3.85383 3.99638 4.10550 4.12633 4.18613 4.40910 4.43260 4.51690 4.52984 4.61078 4.61817 4.75374 4.81421 4.83774 4.87314 4.88417 5.02764 5.15300 5.15651 5.41178 5.47835 5.55036 5.62664 5.64807 5.74889 5.78446 5.95470 6.02875 6.13142 6.20468 6.52837 6.58087 6.78880 7.17310 7.46548 8.72469 Molecular weight = 353.16amu Principal moments of inertia in cm(-1) A = 0.022051 B = 0.001706 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.455674 B =16413.006140 C =16742.634342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.099 3.901 4 C -0.095 4.095 5 C -0.109 4.109 6 C -0.105 4.105 7 C -0.105 4.105 8 C 0.176 3.824 9 N -0.679 5.679 10 C 0.519 3.481 11 N -0.614 5.614 12 C 0.377 3.623 13 N -0.605 5.605 14 C 0.337 3.663 15 C -0.346 4.346 16 C 0.100 3.900 17 N -0.290 5.290 18 N -0.367 5.367 19 C 0.285 3.715 20 C -0.555 4.555 21 H 0.046 0.954 22 C 0.021 3.979 23 N -0.919 5.919 24 Si 0.975 3.025 25 H -0.269 1.269 26 H -0.269 1.269 27 H -0.271 1.271 28 C -0.104 4.104 29 C -0.108 4.108 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.421 0.579 40 H 0.231 0.769 41 H 0.237 0.763 42 H 0.031 0.969 43 H 0.033 0.967 44 H 0.274 0.726 45 H 0.136 0.864 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.489 -14.369 2.161 34.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.023 3.977 4 C -0.095 4.095 5 C -0.127 4.127 6 C -0.124 4.124 7 C -0.106 4.106 8 C 0.053 3.947 9 N -0.311 5.311 10 C 0.264 3.736 11 N -0.346 5.346 12 C 0.084 3.916 13 N -0.333 5.333 14 C 0.090 3.910 15 C -0.364 4.364 16 C -0.095 4.095 17 N -0.105 5.105 18 N -0.153 5.153 19 C 0.166 3.834 20 C -0.593 4.593 21 H 0.064 0.936 22 C -0.180 4.180 23 N -0.557 5.557 24 Si 0.798 3.202 25 H -0.194 1.194 26 H -0.193 1.193 27 H -0.196 1.196 28 C -0.122 4.122 29 C -0.126 4.126 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.260 0.740 40 H 0.247 0.753 41 H 0.254 0.746 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.083 0.917 45 H 0.154 0.846 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -30.135 -13.983 2.227 33.296 hybrid contribution -0.185 0.765 -0.657 1.025 sum -30.321 -13.218 1.570 33.114 Atomic orbital electron populations 1.22935 0.79371 1.03773 1.01061 1.87931 1.21445 1.28275 1.95640 1.21457 0.89140 0.84927 1.02200 1.19881 0.94877 1.00953 0.93836 1.21244 0.94250 0.99007 0.98164 1.21261 0.94306 0.98690 0.98104 1.19871 0.94366 1.02437 0.93896 1.20212 0.87745 0.83115 1.03581 1.44459 1.00325 1.09978 1.76316 1.17979 0.86472 0.85991 0.83121 1.68098 1.06111 1.30455 1.29887 1.25186 0.87552 0.93705 0.85137 1.67534 1.41884 0.97294 1.26539 1.19355 0.90641 0.87225 0.93745 1.19742 0.94359 0.95910 1.26369 1.24242 1.00170 0.87962 0.97089 1.76890 0.90191 1.21787 1.21628 1.49104 1.06943 1.00978 1.58305 1.19108 0.72818 0.93696 0.97736 1.21374 1.01704 1.44599 0.91600 0.93595 1.25793 0.95680 0.93923 1.02633 1.70009 1.10030 1.42437 1.33223 0.85363 0.77830 0.78719 0.78281 1.19386 1.19300 1.19632 1.21267 0.94285 0.98584 0.98068 1.21256 0.94264 0.98929 0.98144 0.88859 0.92926 0.92984 0.91122 0.91224 0.84663 0.84802 0.90471 0.90226 0.74027 0.75307 0.74647 0.95135 0.94942 0.91687 0.84577 0.84527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 11.01 113.37 1.25 1.44 16 2 O -0.41 -5.94 10.69 -148.98 -1.59 -7.54 16 3 C 0.10 1.07 6.06 71.24 0.43 1.50 16 4 C -0.10 -1.27 5.51 -19.86 -0.11 -1.38 16 5 C -0.11 -1.43 9.70 22.27 0.22 -1.21 16 6 C -0.11 -1.42 9.70 22.27 0.22 -1.20 16 7 C -0.11 -1.45 5.25 -19.87 -0.10 -1.56 16 8 C 0.18 2.80 5.86 85.63 0.50 3.30 16 9 N -0.68 -12.97 5.67 -347.72 -1.97 -14.94 16 10 C 0.52 14.87 7.55 133.65 1.01 15.88 16 11 N -0.61 -18.30 9.69 -197.01 -1.91 -20.21 16 12 C 0.38 12.36 12.24 180.87 2.21 14.57 16 13 N -0.61 -26.26 10.47 -198.11 -2.07 -28.33 16 14 C 0.34 15.37 8.04 134.15 1.08 16.45 16 15 C -0.35 -12.30 6.14 -21.29 -0.13 -12.43 16 16 C 0.10 3.28 11.87 85.65 1.02 4.29 16 17 N -0.29 -12.75 12.45 -56.46 -0.70 -13.46 16 18 N -0.37 -18.57 3.63 -348.94 -1.27 -19.83 16 19 C 0.29 16.40 6.19 85.63 0.53 16.93 16 20 C -0.55 -33.36 9.39 25.60 0.24 -33.12 16 21 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 22 C 0.02 1.19 5.46 84.66 0.46 1.65 16 23 N -0.92 -54.91 13.29 21.45 0.28 -54.63 16 24 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 28 C -0.10 -1.35 9.70 22.27 0.22 -1.13 16 29 C -0.11 -1.38 9.70 22.27 0.22 -1.16 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16 34 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 35 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.13 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 38 H 0.08 1.31 8.08 -2.38 -0.02 1.29 16 39 H 0.42 6.34 8.33 -92.70 -0.77 5.56 16 40 H 0.23 5.44 8.06 -2.91 -0.02 5.42 16 41 H 0.24 4.62 8.06 -2.91 -0.02 4.59 16 42 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.03 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 45 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 46 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -78.25 401.97 2.29 -75.96 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.24 Total: 12.86 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 9.25 Total: 22.83 kcal Atomic # 7 Polarization: -143.76 SS G_CDS: -7.64 Total: -151.40 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -1.59 Total: -7.54 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -78.25 2.29 -75.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.787 kcal (2) G-P(sol) polarization free energy of solvation -78.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds