Wall clock time and date at job start Tue Mar 31 2020 05:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99962 * 2 1 4 4 H 1.48499 * 109.46976 * 239.99502 * 3 2 1 5 5 H 1.48492 * 109.47078 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46928 * 119.99948 * 3 2 1 7 7 C 1.37874 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99778 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00301 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47180 * 179.97438 * 9 7 2 11 11 N 1.40067 * 125.86675 * 270.70219 * 10 9 7 12 12 C 1.30252 * 109.69313 * 179.97438 * 11 10 9 13 13 C 1.41169 * 108.46864 * 359.54863 * 12 11 10 14 14 C 1.36310 * 125.87523 * 89.99369 * 10 9 7 15 15 N 1.33192 * 134.62259 * 359.97438 * 14 10 9 16 16 C 1.31502 * 120.69129 * 180.02562 * 15 14 10 17 17 N 1.32125 * 122.64007 * 359.97438 * 16 15 14 18 18 C 1.32857 * 121.19696 * 0.02562 * 17 16 15 19 19 N 1.38109 * 120.81426 * 179.97438 * 18 17 16 20 20 C 1.46499 * 119.99946 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.46827 * 35.00516 * 20 19 18 22 22 C 1.50700 * 109.47257 * 275.00047 * 20 19 18 23 23 N 1.34777 * 119.99675 * 180.27849 * 22 20 19 24 24 O 1.21283 * 119.99803 * 359.97438 * 22 20 19 25 25 C 1.50702 * 109.46707 * 154.99968 * 20 19 18 26 26 C 1.38231 * 120.00047 * 39.73111 * 25 20 19 27 27 C 1.38237 * 119.99869 * 179.78426 * 26 25 20 28 28 C 1.38237 * 119.99968 * 0.43939 * 27 26 25 29 29 C 1.38231 * 120.00102 * 359.81486 * 28 27 26 30 30 C 1.38238 * 119.99812 * 219.99989 * 25 20 19 31 31 H 0.97003 * 119.99582 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.47306 * 59.98982 * 9 7 2 33 33 H 1.09002 * 109.46477 * 299.99163 * 9 7 2 34 34 H 1.08000 * 125.76503 * 179.51914 * 12 11 10 35 35 H 1.07997 * 118.68230 * 179.97438 * 16 15 14 36 36 H 0.97005 * 119.99783 * 180.02562 * 19 18 17 37 37 H 0.97004 * 119.99652 * 179.72868 * 23 22 20 38 38 H 0.97000 * 119.99894 * 359.71837 * 23 22 20 39 39 H 1.08004 * 120.00081 * 359.97438 * 26 25 20 40 40 H 1.08005 * 120.00281 * 180.27236 * 27 26 25 41 41 H 1.08005 * 119.99732 * 179.83078 * 28 27 26 42 42 H 1.07997 * 120.00086 * 179.97438 * 29 28 27 43 43 H 1.07991 * 119.99966 * 359.97438 * 30 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 7 2.7468 -4.2274 -1.1345 12 6 3.5567 -5.1808 -0.7717 13 6 3.5887 -5.2279 0.6389 14 6 2.7221 -4.2198 1.1051 15 7 2.5797 -4.0523 2.4187 16 6 3.2328 -4.8155 3.2674 17 7 4.0527 -5.7754 2.8774 18 6 4.2615 -6.0206 1.5885 19 7 5.1207 -7.0257 1.1897 20 6 5.8153 -7.8365 2.1928 21 1 5.1653 -7.9823 3.0556 22 6 7.0741 -7.1300 2.6258 23 7 7.8821 -7.6954 3.5445 24 8 7.3628 -6.0553 2.1435 25 6 6.1696 -9.1754 1.5988 26 6 6.6164 -9.2559 0.2932 27 6 6.9457 -10.4836 -0.2502 28 6 6.8195 -11.6318 0.5091 29 6 6.3677 -11.5519 1.8131 30 6 6.0425 -10.3237 2.3579 31 1 -0.4850 0.8401 0.0004 32 1 0.6245 -2.5571 -0.8896 33 1 0.6241 -2.5567 0.8904 34 1 4.1100 -5.8265 -1.4375 35 1 3.0934 -4.6511 4.3256 36 1 5.2648 -7.1943 0.2453 37 1 8.6944 -7.2425 3.8203 38 1 7.6513 -8.5551 3.9299 39 1 6.7112 -8.3592 -0.3014 40 1 7.2990 -10.5460 -1.2690 41 1 7.0741 -12.5913 0.0836 42 1 6.2687 -12.4490 2.4061 43 1 5.6897 -10.2612 3.3766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:54 Heat of formation + Delta-G solvation = 112.671022 kcal Electronic energy + Delta-G solvation = -29908.919008 eV Core-core repulsion = 25762.844624 eV Total energy + Delta-G solvation = -4146.074384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.139 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.40962 -40.52005 -38.96754 -38.29533 -36.14586 -34.06627 -33.70235 -32.76056 -31.50266 -31.35434 -31.13770 -29.39753 -27.42139 -26.71331 -23.99028 -23.49701 -22.97306 -22.51254 -22.30475 -20.59214 -20.02816 -18.29520 -17.97679 -17.48811 -17.03930 -16.79516 -16.60673 -16.31575 -15.64249 -15.42021 -15.01898 -14.87976 -14.62026 -14.49195 -14.18586 -13.95873 -13.76678 -13.62422 -13.33476 -13.12244 -13.09553 -12.73114 -12.11544 -11.68550 -11.59400 -11.50856 -11.45059 -11.03426 -10.92868 -10.70777 -10.39673 -10.23823 -10.05740 -9.87543 -9.81172 -9.40151 -9.32856 -9.13041 -8.66191 -8.54794 -8.19976 -7.63114 -6.17429 -4.23600 0.77671 0.92110 1.34275 1.96974 2.45912 2.79029 3.02693 3.14513 3.20718 3.30762 3.33027 3.39077 3.57836 4.09624 4.35855 4.38455 4.44277 4.52382 4.60655 4.66683 4.75648 4.78905 4.90952 4.99022 5.03569 5.16189 5.18262 5.20660 5.43387 5.54538 5.58776 5.75270 5.95874 6.00440 6.05223 6.30094 6.47874 6.56271 6.69542 6.83872 7.06579 7.09896 7.14745 7.22603 7.51543 7.75667 7.93452 7.96186 8.08680 8.26885 8.76112 8.85943 9.41245 10.90737 Molecular weight = 352.14amu Principal moments of inertia in cm(-1) A = 0.018432 B = 0.002438 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.712567 B =11481.304639 C =11919.484221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.264 3.736 10 N -0.332 5.332 11 N -0.242 5.242 12 C 0.069 3.931 13 C -0.332 4.332 14 C 0.364 3.636 15 N -0.552 5.552 16 C 0.367 3.633 17 N -0.619 5.619 18 C 0.518 3.482 19 N -0.684 5.684 20 C 0.183 3.817 21 H 0.128 0.872 22 C 0.512 3.488 23 N -0.854 5.854 24 O -0.521 6.521 25 C -0.096 4.096 26 C -0.107 4.107 27 C -0.113 4.113 28 C -0.114 4.114 29 C -0.115 4.115 30 C -0.105 4.105 31 H 0.268 0.732 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.182 0.818 35 H 0.195 0.805 36 H 0.413 0.587 37 H 0.401 0.599 38 H 0.399 0.601 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.755 -27.042 6.010 31.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.572 4.572 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.119 5.119 11 N -0.057 5.057 12 C -0.126 4.126 13 C -0.349 4.349 14 C 0.116 3.884 15 N -0.276 5.276 16 C 0.073 3.927 17 N -0.349 5.349 18 C 0.267 3.733 19 N -0.318 5.318 20 C 0.073 3.927 21 H 0.145 0.855 22 C 0.294 3.706 23 N -0.418 5.418 24 O -0.395 6.395 25 C -0.097 4.097 26 C -0.125 4.125 27 C -0.131 4.131 28 C -0.132 4.132 29 C -0.133 4.133 30 C -0.124 4.124 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.199 0.801 35 H 0.211 0.789 36 H 0.251 0.749 37 H 0.232 0.768 38 H 0.227 0.773 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 13.759 -25.234 5.540 29.271 hybrid contribution 1.265 0.178 -0.196 1.292 sum 15.023 -25.056 5.344 29.700 Atomic orbital electron populations 1.69914 1.05981 1.27685 1.49418 1.24889 0.94982 0.99326 0.94454 0.86405 0.79437 0.81862 0.78921 1.20014 1.20903 1.19952 1.21226 0.93556 0.89716 1.52685 0.92091 1.19786 0.85657 0.79843 0.99972 1.49456 1.35611 1.28012 0.98773 1.76937 1.11302 1.08148 1.09355 1.23356 0.99106 0.97817 0.92310 1.19550 1.12419 1.07615 0.95331 1.18916 0.90994 0.89941 0.88516 1.67498 1.29494 1.30627 1.00001 1.24361 0.85113 0.84030 0.99158 1.67841 1.26668 1.25921 1.14504 1.17761 0.83593 0.83599 0.88361 1.43891 1.45385 1.34354 1.08171 1.19550 0.92471 0.86775 0.93895 0.85452 1.20982 0.85020 0.85725 0.78912 1.43779 1.27280 1.25520 1.45241 1.90802 1.73038 1.20983 1.54677 1.19641 1.01541 0.93330 0.95139 1.21012 0.98390 0.98362 0.94732 1.21178 0.99454 0.92253 1.00172 1.21259 0.98920 0.98591 0.94471 1.21158 0.99009 0.97522 0.95626 1.21012 0.99650 0.91642 1.00060 0.92250 0.92801 0.92228 0.80127 0.78862 0.74889 0.76783 0.77321 0.85791 0.85576 0.85811 0.85554 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 2 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 3 Si 0.91 22.30 29.54 -169.99 -5.02 17.28 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.53 -15.65 9.39 -34.44 -0.32 -15.97 16 8 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 9 C 0.26 7.22 6.19 -5.19 -0.03 7.19 16 10 N -0.33 -8.21 3.63 -61.64 -0.22 -8.43 16 11 N -0.24 -5.36 12.45 30.80 0.38 -4.98 16 12 C 0.07 1.24 11.87 -17.11 -0.20 1.04 16 13 C -0.33 -6.38 6.14 -106.81 -0.66 -7.03 16 14 C 0.36 8.36 8.04 -156.24 -1.26 7.10 16 15 N -0.55 -12.05 10.47 -13.97 -0.15 -12.20 16 16 C 0.37 6.43 12.24 -92.12 -1.13 5.30 16 17 N -0.62 -10.25 9.34 -13.62 -0.13 -10.38 16 18 C 0.52 8.56 7.43 -154.85 -1.15 7.41 16 19 N -0.68 -8.43 4.66 -55.86 -0.26 -8.69 16 20 C 0.18 1.80 2.61 -70.23 -0.18 1.61 16 21 H 0.13 1.20 7.43 -51.93 -0.39 0.82 16 22 C 0.51 5.83 7.45 -10.98 -0.08 5.75 16 23 N -0.85 -5.99 8.77 31.22 0.27 -5.72 16 24 O -0.52 -8.67 17.19 5.55 0.10 -8.57 16 25 C -0.10 -0.71 4.74 -104.62 -0.50 -1.21 16 26 C -0.11 -0.79 9.06 -39.58 -0.36 -1.15 16 27 C -0.11 -0.70 10.05 -39.58 -0.40 -1.10 16 28 C -0.11 -0.62 10.05 -39.58 -0.40 -1.01 16 29 C -0.12 -0.58 10.05 -39.58 -0.40 -0.98 16 30 C -0.11 -0.59 9.50 -39.58 -0.38 -0.96 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.05 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.06 1.70 8.14 -51.93 -0.42 1.27 16 34 H 0.18 2.25 8.06 -52.49 -0.42 1.83 16 35 H 0.19 2.56 8.06 -52.49 -0.42 2.13 16 36 H 0.41 4.36 6.72 -40.82 -0.27 4.08 16 37 H 0.40 2.55 8.93 -40.82 -0.36 2.18 16 38 H 0.40 1.58 8.54 -40.82 -0.35 1.23 16 39 H 0.12 0.91 6.90 -52.48 -0.36 0.55 16 40 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 41 H 0.12 0.44 8.06 -52.48 -0.42 0.01 16 42 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 43 H 0.13 0.45 8.04 -52.49 -0.42 0.03 16 LS Contribution 380.17 15.07 5.73 5.73 Total: -1.00 -38.02 380.17 -10.76 -48.78 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -4.66 Total: 4.89 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: -7.53 Total: 7.81 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: 0.64 Total: -75.92 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.10 Total: -8.57 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.02 -10.76 -48.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.448 kcal (2) G-P(sol) polarization free energy of solvation -38.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds