Wall clock time and date at job start Tue Mar 31 2020 05:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99641 * 2 1 4 4 H 1.48500 * 109.47106 * 239.99746 * 3 2 1 5 5 H 1.48497 * 109.47621 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46767 * 120.00112 * 3 2 1 7 7 C 1.37877 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00263 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99787 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.47202 * 180.02562 * 9 7 2 11 11 N 1.40056 * 125.87177 * 270.40393 * 10 9 7 12 12 C 1.30250 * 109.69480 * 180.02562 * 11 10 9 13 13 C 1.41167 * 108.47105 * 359.78640 * 12 11 10 14 14 C 1.36317 * 125.87373 * 89.99755 * 10 9 7 15 15 N 1.33201 * 134.61338 * 0.29039 * 14 10 9 16 16 C 1.31503 * 120.67819 * 179.68308 * 15 14 10 17 17 N 1.32126 * 122.64839 * 0.02562 * 16 15 14 18 18 C 1.32859 * 121.19379 * 0.02562 * 17 16 15 19 19 N 1.38104 * 120.81016 * 180.02562 * 18 17 16 20 20 C 1.46498 * 120.00469 * 359.97424 * 19 18 17 21 21 H 1.09007 * 109.46849 * 325.00483 * 20 19 18 22 22 C 1.50697 * 109.46932 * 85.00061 * 20 19 18 23 23 N 1.34782 * 119.99948 * 180.02562 * 22 20 19 24 24 O 1.21276 * 120.00136 * 0.02562 * 22 20 19 25 25 C 1.50700 * 109.47428 * 205.00210 * 20 19 18 26 26 C 1.38234 * 120.00080 * 319.72885 * 25 20 19 27 27 C 1.38227 * 120.00185 * 179.80995 * 26 25 20 28 28 C 1.38234 * 120.00122 * 0.39847 * 27 26 25 29 29 C 1.38240 * 119.99647 * 359.84911 * 28 27 26 30 30 C 1.38234 * 120.00256 * 359.96451 * 29 28 27 31 31 H 0.97000 * 120.00129 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.47733 * 59.99868 * 9 7 2 33 33 H 1.08998 * 109.47419 * 299.99799 * 9 7 2 34 34 H 1.08002 * 125.76561 * 179.78409 * 12 11 10 35 35 H 1.08003 * 118.67378 * 180.02562 * 16 15 14 36 36 H 0.97009 * 119.99762 * 179.97438 * 19 18 17 37 37 H 0.96991 * 119.99817 * 359.97438 * 23 22 20 38 38 H 0.97002 * 119.99522 * 180.02562 * 23 22 20 39 39 H 1.08002 * 119.99667 * 359.97438 * 26 25 20 40 40 H 1.08000 * 120.00317 * 180.22903 * 27 26 25 41 41 H 1.08002 * 120.00312 * 179.83555 * 28 27 26 42 42 H 1.08001 * 119.99747 * 179.97438 * 29 28 27 43 43 H 1.07998 * 120.00156 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 7 2.7425 -4.2313 -1.1354 12 6 3.5530 -5.1842 -0.7726 13 6 3.5856 -5.2306 0.6380 14 6 2.7222 -4.2199 1.1041 15 7 2.5756 -4.0556 2.4177 16 6 3.2248 -4.8222 3.2664 17 7 4.0454 -5.7816 2.8765 18 6 4.2590 -6.0228 1.5876 19 7 5.1180 -7.0280 1.1889 20 6 5.8072 -7.8434 2.1921 21 1 6.0508 -7.2262 3.0570 22 6 4.9110 -8.9767 2.6202 23 7 5.3380 -9.8620 3.5426 24 8 3.8057 -9.0924 2.1348 25 6 7.0756 -8.4019 1.6003 26 6 7.0857 -8.8633 0.2973 27 6 8.2502 -9.3720 -0.2468 28 6 9.4025 -9.4270 0.5148 29 6 9.3911 -8.9703 1.8195 30 6 8.2276 -8.4580 2.3624 31 1 -0.4850 0.8400 0.0004 32 1 0.6240 -2.5567 -0.8903 33 1 0.6248 -2.5571 0.8897 34 1 4.1065 -5.8297 -1.4383 35 1 3.0815 -4.6610 4.3246 36 1 5.2650 -7.1943 0.2446 37 1 6.2221 -9.7697 3.9305 38 1 4.7612 -10.5917 3.8178 39 1 6.1844 -8.8239 -0.2965 40 1 8.2590 -9.7291 -1.2660 41 1 10.3116 -9.8269 0.0905 42 1 10.2913 -9.0136 2.4146 43 1 8.2186 -8.1016 3.3818 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:58 Heat of formation + Delta-G solvation = 112.335989 kcal Electronic energy + Delta-G solvation = -29894.639274 eV Core-core repulsion = 25748.550361 eV Total energy + Delta-G solvation = -4146.088912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.139 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.40972 -40.52338 -38.97278 -38.29661 -36.14672 -34.07722 -33.70970 -32.76373 -31.49977 -31.35485 -31.13715 -29.39702 -27.42412 -26.71633 -23.98803 -23.49944 -22.97226 -22.51254 -22.30635 -20.59898 -20.02934 -18.29419 -17.98425 -17.49190 -17.03282 -16.81387 -16.61269 -16.31765 -15.64648 -15.42104 -15.01349 -14.87771 -14.62772 -14.48452 -14.21655 -13.96564 -13.76703 -13.64013 -13.27737 -13.14474 -13.10624 -12.73383 -12.12445 -11.67969 -11.59509 -11.50936 -11.45007 -11.04223 -10.93904 -10.71677 -10.41065 -10.25522 -10.05607 -9.89341 -9.82389 -9.39496 -9.32767 -9.12997 -8.66130 -8.56003 -8.19940 -7.63264 -6.18273 -4.24804 0.78240 0.92821 1.34533 1.97217 2.44299 2.78401 3.06099 3.10503 3.21332 3.28703 3.31567 3.36655 3.57607 4.09763 4.34124 4.39019 4.44575 4.52953 4.60689 4.67205 4.75265 4.78331 4.91267 4.99402 5.03920 5.16008 5.17657 5.20936 5.44006 5.55069 5.58916 5.75302 5.96539 6.00909 6.05890 6.30041 6.48503 6.54628 6.69545 6.83746 7.06710 7.09006 7.14906 7.22557 7.51299 7.74452 7.93165 7.95413 8.06703 8.26980 8.74899 8.85643 9.39875 10.89920 Molecular weight = 352.14amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.002482 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.279568 B =11279.361302 C =11846.652016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.264 3.736 10 N -0.332 5.332 11 N -0.242 5.242 12 C 0.069 3.931 13 C -0.332 4.332 14 C 0.364 3.636 15 N -0.552 5.552 16 C 0.367 3.633 17 N -0.619 5.619 18 C 0.519 3.481 19 N -0.684 5.684 20 C 0.183 3.817 21 H 0.128 0.872 22 C 0.513 3.487 23 N -0.853 5.853 24 O -0.523 6.523 25 C -0.096 4.096 26 C -0.107 4.107 27 C -0.113 4.113 28 C -0.114 4.114 29 C -0.115 4.115 30 C -0.105 4.105 31 H 0.268 0.732 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.182 0.818 35 H 0.195 0.805 36 H 0.413 0.587 37 H 0.399 0.601 38 H 0.401 0.599 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.838 -22.704 6.034 30.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.572 4.572 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.118 5.118 11 N -0.058 5.058 12 C -0.126 4.126 13 C -0.349 4.349 14 C 0.116 3.884 15 N -0.276 5.276 16 C 0.073 3.927 17 N -0.349 5.349 18 C 0.267 3.733 19 N -0.318 5.318 20 C 0.073 3.927 21 H 0.146 0.854 22 C 0.295 3.705 23 N -0.418 5.418 24 O -0.397 6.397 25 C -0.097 4.097 26 C -0.125 4.125 27 C -0.131 4.131 28 C -0.132 4.132 29 C -0.133 4.133 30 C -0.124 4.124 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.199 0.801 35 H 0.211 0.789 36 H 0.251 0.749 37 H 0.227 0.773 38 H 0.232 0.768 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.123 -21.510 5.564 28.672 hybrid contribution 1.123 0.063 -0.199 1.142 sum 19.246 -21.447 5.365 29.312 Atomic orbital electron populations 1.69914 1.05999 1.27707 1.49308 1.24898 0.94979 0.99333 0.94474 0.86401 0.79432 0.81892 0.78848 1.20030 1.20908 1.19973 1.21213 0.93511 0.89703 1.52783 0.92096 1.19791 0.85677 0.79815 1.00008 1.49451 1.35660 1.27960 0.98769 1.76934 1.11271 1.08195 1.09363 1.23355 0.99163 0.97760 0.92308 1.19546 1.12312 1.07730 0.95328 1.18918 0.91048 0.89881 0.88516 1.67506 1.29426 1.30695 0.99996 1.24362 0.85254 0.83889 0.99160 1.67843 1.26826 1.25761 1.14510 1.17759 0.83635 0.83547 0.88364 1.43886 1.46534 1.33185 1.08175 1.19552 0.88005 0.91189 0.93964 0.85441 1.20978 0.87666 0.83000 0.78872 1.43778 1.21298 1.31797 1.44919 1.90785 1.20728 1.73464 1.54711 1.19638 0.93890 1.00973 0.95183 1.21007 0.98712 0.98025 0.94759 1.21172 0.92629 0.99131 1.00133 1.21261 0.98325 0.99195 0.94447 1.21163 0.97964 0.98535 0.95645 1.21015 0.91921 0.99366 1.00049 0.92226 0.92792 0.92244 0.80125 0.78865 0.74885 0.77290 0.76795 0.85795 0.85578 0.85805 0.85544 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 2 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 3 Si 0.91 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.48 9.39 -34.44 -0.32 -15.80 16 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.26 7.22 6.19 -5.19 -0.03 7.19 16 10 N -0.33 -8.21 3.63 -61.64 -0.22 -8.44 16 11 N -0.24 -5.37 12.45 30.80 0.38 -4.99 16 12 C 0.07 1.24 11.87 -17.11 -0.20 1.04 16 13 C -0.33 -6.38 6.14 -106.82 -0.66 -7.04 16 14 C 0.36 8.37 8.04 -156.23 -1.26 7.11 16 15 N -0.55 -12.06 10.47 -13.97 -0.15 -12.20 16 16 C 0.37 6.43 12.24 -92.12 -1.13 5.30 16 17 N -0.62 -10.25 9.34 -13.62 -0.13 -10.38 16 18 C 0.52 8.57 7.43 -154.86 -1.15 7.42 16 19 N -0.68 -8.44 4.66 -55.86 -0.26 -8.70 16 20 C 0.18 1.80 2.61 -70.24 -0.18 1.61 16 21 H 0.13 1.22 7.43 -51.92 -0.39 0.84 16 22 C 0.51 5.70 7.45 -10.98 -0.08 5.61 16 23 N -0.85 -5.78 8.77 31.22 0.27 -5.50 16 24 O -0.52 -8.40 17.18 5.56 0.10 -8.31 16 25 C -0.10 -0.72 4.74 -104.62 -0.50 -1.22 16 26 C -0.11 -0.80 9.04 -39.59 -0.36 -1.16 16 27 C -0.11 -0.71 10.05 -39.59 -0.40 -1.11 16 28 C -0.11 -0.63 10.05 -39.58 -0.40 -1.03 16 29 C -0.12 -0.61 10.05 -39.58 -0.40 -1.00 16 30 C -0.11 -0.61 9.51 -39.58 -0.38 -0.98 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.05 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.18 2.26 8.06 -52.49 -0.42 1.83 16 35 H 0.19 2.56 8.06 -52.48 -0.42 2.13 16 36 H 0.41 4.36 6.75 -40.82 -0.28 4.09 16 37 H 0.40 1.52 8.55 -40.82 -0.35 1.18 16 38 H 0.40 2.41 8.93 -40.82 -0.36 2.04 16 39 H 0.12 0.90 6.93 -52.49 -0.36 0.54 16 40 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.12 0.46 8.06 -52.49 -0.42 0.03 16 42 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 43 H 0.13 0.48 8.04 -52.49 -0.42 0.06 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -37.68 380.25 -10.76 -48.44 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.67 Total: 5.11 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: -7.53 Total: 7.74 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: 0.64 Total: -75.63 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.10 Total: -8.31 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.68 -10.76 -48.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.778 kcal (2) G-P(sol) polarization free energy of solvation -37.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds