Wall clock time and date at job start Tue Mar 31 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40298 * 126.09637 * 2 1 4 4 C 1.31065 * 108.27315 * 179.97438 * 3 2 1 5 5 C 1.39297 * 108.07782 * 359.97438 * 4 3 2 6 6 C 1.34333 * 126.08875 * 179.97438 * 2 1 3 7 7 C 1.50820 * 128.03518 * 0.12558 * 6 2 1 8 8 C 1.53357 * 108.38598 * 163.38270 * 7 6 2 9 9 C 1.53110 * 109.51583 * 49.92865 * 8 7 6 10 10 C 1.50836 * 127.89937 * 180.08163 * 5 4 3 11 11 H 1.09003 * 109.71865 * 283.09513 * 10 5 4 12 12 N 1.46495 * 109.68412 * 43.63255 * 10 5 4 13 13 C 1.38116 * 120.00381 * 273.91917 * 12 10 5 14 14 N 1.32858 * 120.80645 * 359.97308 * 13 12 10 15 15 C 1.32128 * 121.19079 * 180.02562 * 14 13 12 16 16 N 1.31499 * 122.64379 * 359.97438 * 15 14 13 17 17 C 1.33191 * 120.68844 * 359.78468 * 16 15 14 18 18 C 1.40807 * 120.81629 * 179.97438 * 13 12 10 19 19 C 1.41166 * 134.69989 * 359.94032 * 18 13 12 20 20 N 1.30253 * 108.47322 * 180.02562 * 19 18 13 21 21 N 1.36323 * 134.61848 * 179.64177 * 17 16 15 22 22 C 1.46491 * 125.87070 * 0.64701 * 21 17 16 23 23 C 1.50702 * 109.46957 * 269.71454 * 22 21 17 24 24 H 1.08002 * 120.00299 * 0.02562 * 23 22 21 25 25 C 1.37884 * 119.99942 * 179.72213 * 23 22 21 26 26 N 1.31514 * 119.99985 * 180.27663 * 25 23 22 27 27 Si 1.86800 * 119.99777 * 0.28166 * 25 23 22 28 28 H 1.48498 * 109.47109 * 89.99834 * 27 25 23 29 29 H 1.48507 * 109.46754 * 209.99574 * 27 25 23 30 30 H 1.48498 * 109.47278 * 329.99405 * 27 25 23 31 31 H 1.09000 * 109.47130 * 270.05378 * 1 2 3 32 32 H 1.09009 * 109.46900 * 30.04787 * 1 2 3 33 33 H 1.08993 * 109.47359 * 150.04550 * 1 2 3 34 34 H 1.08002 * 125.96243 * 180.02562 * 4 3 2 35 35 H 1.08995 * 109.68464 * 43.65087 * 7 6 2 36 36 H 1.09004 * 109.67882 * 283.10722 * 7 6 2 37 37 H 1.09002 * 109.46387 * 289.91623 * 8 7 6 38 38 H 1.09001 * 109.46128 * 169.93802 * 8 7 6 39 39 H 1.08996 * 109.46555 * 169.72365 * 9 8 7 40 40 H 1.08999 * 109.45952 * 49.74278 * 9 8 7 41 41 H 0.97003 * 120.00394 * 93.91655 * 12 10 5 42 42 H 1.07997 * 118.67451 * 179.97438 * 15 14 13 43 43 H 1.08007 * 125.76689 * 0.02912 * 19 18 13 44 44 H 1.09004 * 109.47166 * 149.71720 * 22 21 17 45 45 H 1.08994 * 109.47507 * 29.71426 * 22 21 17 46 46 H 0.96996 * 119.99730 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2915 1.1336 0.0000 4 6 3.5393 0.7325 0.0006 5 6 3.5455 -0.6605 0.0015 6 6 2.2562 -1.0855 0.0005 7 6 1.8437 -2.5362 -0.0015 8 6 3.0534 -3.3826 -0.4162 9 6 4.2701 -2.9810 0.4219 10 6 4.7398 -1.5817 0.0041 11 1 5.1746 -1.6230 -0.9946 12 7 5.7387 -1.0920 0.9572 13 6 6.6651 -0.1469 0.5622 14 7 6.6654 0.3287 -0.6784 15 6 7.5484 1.2325 -1.0646 16 7 8.4700 1.7133 -0.2591 17 6 8.5487 1.3028 1.0055 18 6 7.6324 0.3362 1.4642 19 6 7.9413 0.0834 2.8183 20 7 8.9578 0.8250 3.1551 21 7 9.3658 1.5933 2.0574 22 6 10.4754 2.5497 2.0438 23 6 11.7439 1.8416 1.6429 24 1 11.7253 0.7850 1.4201 25 6 12.9271 2.5441 1.5545 26 7 14.0330 1.9273 1.1994 27 14 12.9591 4.3717 1.9394 28 1 13.2387 4.5684 3.3845 29 1 14.0216 5.0282 1.1358 30 1 11.6428 4.9715 1.6036 31 1 -0.3633 0.0010 1.0277 32 1 -0.3633 0.8896 -0.5146 33 1 -0.3634 -0.8903 -0.5131 34 1 4.4106 1.3706 0.0011 35 1 1.0303 -2.6856 -0.7114 36 1 1.5176 -2.8265 0.9973 37 1 3.2685 -3.2161 -1.4717 38 1 2.8319 -4.4373 -0.2527 39 1 5.0753 -3.6976 0.2600 40 1 3.9976 -2.9732 1.4772 41 1 5.7495 -1.4314 1.8659 42 1 7.5119 1.5908 -2.0827 43 1 7.4226 -0.6082 3.4657 44 1 10.5976 2.9786 3.0384 45 1 10.2615 3.3443 1.3292 46 1 14.8654 2.4214 1.1376 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:26 Heat of formation + Delta-G solvation = 199.611591 kcal Electronic energy + Delta-G solvation = -30669.982664 eV Core-core repulsion = 26598.085490 eV Total energy + Delta-G solvation = -4071.897175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.166 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.78350 -41.32954 -38.57334 -37.45485 -35.45036 -33.85585 -33.42755 -32.12750 -31.42396 -30.29849 -29.71120 -28.34577 -27.62597 -26.84839 -23.98993 -23.84782 -22.77026 -22.28804 -22.06421 -20.91472 -20.01329 -19.03314 -17.81779 -17.53968 -17.07762 -16.86296 -16.30685 -16.07425 -15.28319 -15.10317 -14.92117 -14.42580 -14.29452 -14.20052 -14.06328 -13.84498 -13.75176 -13.56265 -13.24901 -13.07912 -12.89723 -12.75488 -12.43705 -12.19650 -12.00571 -11.63678 -11.50963 -11.24542 -11.09980 -10.99650 -10.92441 -10.68179 -10.62152 -10.23117 -10.07965 -9.66321 -9.40742 -9.26095 -8.71264 -8.67947 -8.40391 -8.22115 -7.61462 -6.19258 -4.21432 1.31894 1.66736 1.94576 2.30675 2.62115 2.91473 3.04264 3.22913 3.23847 3.30453 3.31611 4.15259 4.24077 4.29165 4.39386 4.43378 4.45939 4.61857 4.70419 4.72924 4.79295 4.89196 4.96628 5.00730 5.07313 5.10622 5.13049 5.18146 5.25791 5.28874 5.43544 5.49517 5.62917 5.68412 5.71972 5.86563 5.92529 6.00879 6.32861 6.51613 6.56364 6.61903 6.82075 6.91848 6.98841 7.27674 7.34698 7.48149 7.60134 7.88092 8.17499 8.34574 8.80764 8.84531 9.35811 10.93513 Molecular weight = 353.17amu Principal moments of inertia in cm(-1) A = 0.021259 B = 0.002370 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.797549 B =11810.744997 C =12256.058093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.372 5.372 3 N -0.307 5.307 4 C 0.084 3.916 5 C -0.244 4.244 6 C 0.084 3.916 7 C -0.055 4.055 8 C -0.108 4.108 9 C -0.129 4.129 10 C 0.235 3.765 11 H 0.101 0.899 12 N -0.697 5.697 13 C 0.513 3.487 14 N -0.614 5.614 15 C 0.369 3.631 16 N -0.558 5.558 17 C 0.368 3.632 18 C -0.336 4.336 19 C 0.073 3.927 20 N -0.243 5.243 21 N -0.333 5.333 22 C 0.237 3.763 23 C -0.536 4.536 24 H 0.078 0.922 25 C 0.079 3.921 26 N -0.888 5.888 27 Si 0.874 3.126 28 H -0.272 1.272 29 H -0.280 1.280 30 H -0.263 1.263 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.177 0.823 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.408 0.592 42 H 0.195 0.805 43 H 0.183 0.817 44 H 0.046 0.954 45 H 0.056 0.944 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.301 -11.210 -2.706 31.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.154 5.154 3 N -0.128 5.128 4 C -0.101 4.101 5 C -0.257 4.257 6 C -0.045 4.045 7 C -0.094 4.094 8 C -0.146 4.146 9 C -0.167 4.167 10 C 0.129 3.871 11 H 0.119 0.881 12 N -0.328 5.328 13 C 0.261 3.739 14 N -0.344 5.344 15 C 0.075 3.925 16 N -0.283 5.283 17 C 0.120 3.880 18 C -0.354 4.354 19 C -0.122 4.122 20 N -0.058 5.058 21 N -0.119 5.119 22 C 0.118 3.882 23 C -0.575 4.575 24 H 0.096 0.904 25 C -0.125 4.125 26 N -0.525 5.525 27 Si 0.700 3.300 28 H -0.197 1.197 29 H -0.205 1.205 30 H -0.187 1.187 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.194 0.806 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.244 0.756 42 H 0.211 0.789 43 H 0.200 0.800 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -29.100 -9.347 -2.738 30.687 hybrid contribution 0.287 -0.219 0.712 0.798 sum -28.813 -9.566 -2.026 30.427 Atomic orbital electron populations 1.21795 0.74748 1.04273 1.03169 1.48222 1.06279 1.03649 1.57209 1.77603 1.01714 1.07106 1.26348 1.23531 0.94620 0.94666 0.97323 1.20239 0.93705 0.94276 1.17466 1.20875 0.90977 0.90516 1.02129 1.20354 0.99014 0.87481 1.02576 1.21478 0.93216 0.99151 1.00780 1.21903 0.98298 0.95899 1.00582 1.19208 0.84435 0.89480 0.93962 0.88084 1.44398 1.31438 1.42522 1.14465 1.17899 0.83811 0.84433 0.87803 1.67997 1.31109 1.20173 1.15167 1.24430 0.83155 0.86567 0.98331 1.67500 1.26351 1.32615 1.01802 1.18888 0.89225 0.91132 0.88768 1.19582 1.06827 1.11289 0.97686 1.23382 0.95747 0.99812 0.93266 1.76940 1.12762 1.06439 1.09689 1.48925 1.25397 1.33707 1.03873 1.20079 0.82757 0.86503 0.98820 1.21108 0.90258 0.98004 1.48087 0.90405 1.24772 0.95067 0.98448 0.94179 1.69871 0.99455 1.36605 1.46606 0.86876 0.78766 0.85275 0.79044 1.19699 1.20502 1.18742 0.90928 0.89358 0.89755 0.80573 0.90334 0.89843 0.90809 0.90407 0.90424 0.91166 0.75558 0.78879 0.79988 0.93569 0.92661 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.57 11.32 59.85 0.68 1.25 16 2 N -0.37 -3.77 4.00 -63.88 -0.26 -4.02 16 3 N -0.31 -4.16 12.59 30.54 0.38 -3.77 16 4 C 0.08 1.12 11.47 -17.49 -0.20 0.91 16 5 C -0.24 -2.65 5.60 -105.05 -0.59 -3.23 16 6 C 0.08 0.77 6.73 -82.33 -0.55 0.21 16 7 C -0.06 -0.28 5.90 -27.64 -0.16 -0.44 16 8 C -0.11 -0.51 5.90 -26.49 -0.16 -0.67 16 9 C -0.13 -0.79 5.39 -26.47 -0.14 -0.93 16 10 C 0.24 2.22 2.85 -68.81 -0.20 2.02 16 11 H 0.10 1.11 7.57 -51.93 -0.39 0.71 16 12 N -0.70 -7.50 5.12 -54.46 -0.28 -7.78 16 13 C 0.51 7.59 6.82 -154.85 -1.06 6.54 16 14 N -0.61 -9.33 8.62 -13.62 -0.12 -9.45 16 15 C 0.37 6.05 12.24 -92.12 -1.13 4.92 16 16 N -0.56 -11.55 10.47 -13.97 -0.15 -11.69 16 17 C 0.37 7.98 8.04 -156.23 -1.26 6.72 16 18 C -0.34 -5.96 6.14 -106.82 -0.66 -6.62 16 19 C 0.07 1.22 11.87 -17.11 -0.20 1.02 16 20 N -0.24 -5.14 12.45 30.80 0.38 -4.75 16 21 N -0.33 -7.85 3.63 -61.65 -0.22 -8.07 16 22 C 0.24 6.01 5.26 -5.20 -0.03 5.98 16 23 C -0.54 -15.69 9.94 -34.44 -0.34 -16.03 16 24 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 25 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 26 N -0.89 -27.21 13.96 55.43 0.77 -26.44 16 27 Si 0.87 21.09 27.47 -169.99 -4.67 16.43 16 28 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 30 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.08 0.25 7.57 -51.93 -0.39 -0.15 16 34 H 0.18 2.55 6.98 -52.49 -0.37 2.19 16 35 H 0.08 0.28 7.76 -51.93 -0.40 -0.12 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 38 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 41 H 0.41 3.56 8.47 -40.82 -0.35 3.21 16 42 H 0.19 2.43 8.06 -52.49 -0.42 2.01 16 43 H 0.18 2.06 8.06 -52.48 -0.42 1.64 16 44 H 0.05 1.13 7.58 -51.93 -0.39 0.74 16 45 H 0.06 1.40 7.19 -51.93 -0.37 1.02 16 46 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 382.51 15.07 5.76 5.76 Total: -1.00 -37.05 382.51 -10.53 -47.58 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.06 Total: 2.37 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -6.09 Total: 3.85 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: 0.52 Total: -75.99 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.05 -10.53 -47.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.192 kcal (2) G-P(sol) polarization free energy of solvation -37.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 210.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 199.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds