Wall clock time and date at job start Tue Mar 31 2020 06:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46497 * 119.99728 * 2 1 4 4 C 1.38998 * 119.99949 * 179.97438 * 2 1 3 5 5 C 1.39148 * 119.70589 * 4.99842 * 4 2 1 6 6 C 1.38297 * 119.09455 * 179.97438 * 5 4 2 7 7 C 1.38880 * 118.50835 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.33447 * 179.97438 * 7 6 5 9 9 N 1.46503 * 109.46956 * 90.00712 * 8 7 6 10 10 C 1.38107 * 119.99962 * 180.02562 * 9 8 7 11 11 N 1.32858 * 120.81448 * 359.97323 * 10 9 8 12 12 C 1.32123 * 121.19451 * 180.02562 * 11 10 9 13 13 N 1.31510 * 122.64648 * 0.02562 * 12 11 10 14 14 C 1.33199 * 120.68256 * 0.02562 * 13 12 11 15 15 C 1.40818 * 120.81214 * 179.97438 * 10 9 8 16 16 C 1.41168 * 134.69640 * 0.03213 * 15 10 9 17 17 N 1.30249 * 108.46928 * 180.20253 * 16 15 10 18 18 N 1.36308 * 134.61923 * 179.97438 * 14 13 12 19 19 C 1.46510 * 125.87260 * 0.07553 * 18 14 13 20 20 C 1.50695 * 109.46809 * 90.00139 * 19 18 14 21 21 H 1.07999 * 120.00635 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99588 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99924 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00012 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47133 * 90.00704 * 24 22 20 26 26 H 1.48511 * 109.46939 * 210.00066 * 24 22 20 27 27 H 1.48499 * 109.47254 * 330.00061 * 24 22 20 28 28 C 1.38028 * 119.32928 * 0.25785 * 7 6 5 29 29 N 1.31969 * 120.85548 * 359.45155 * 28 7 6 30 30 H 1.09006 * 109.47149 * 270.00275 * 1 2 3 31 31 H 1.09000 * 109.47274 * 30.00135 * 1 2 3 32 32 H 1.08999 * 109.47094 * 150.00512 * 1 2 3 33 33 H 1.09001 * 109.46775 * 269.99565 * 3 2 1 34 34 H 1.08997 * 109.47260 * 30.00351 * 3 2 1 35 35 H 1.09005 * 109.46753 * 149.99880 * 3 2 1 36 36 H 1.07999 * 120.45221 * 0.02562 * 5 4 2 37 37 H 1.08003 * 120.74553 * 179.97438 * 6 5 4 38 38 H 1.08999 * 109.47480 * 330.00434 * 8 7 6 39 39 H 1.09004 * 109.47245 * 210.00082 * 8 7 6 40 40 H 0.97007 * 119.99894 * 359.97438 * 9 8 7 41 41 H 1.08001 * 118.67993 * 179.97438 * 12 11 10 42 42 H 1.08002 * 125.76328 * 359.93061 * 16 15 10 43 43 H 1.08997 * 109.46820 * 210.00471 * 19 18 14 44 44 H 1.08996 * 109.46904 * 330.00105 * 19 18 14 45 45 H 0.97000 * 120.00352 * 179.97438 * 23 22 20 46 46 H 1.07993 * 119.57053 * 179.74150 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1600 -1.2038 0.0005 5 6 1.4621 -2.4030 -0.1042 6 6 2.1663 -3.5932 -0.1029 7 6 3.5502 -3.5445 0.0029 8 6 4.3583 -4.8165 0.0090 9 7 4.7234 -5.1696 -1.3651 10 6 5.4700 -6.3052 -1.6111 11 7 5.8660 -7.0886 -0.6138 12 6 6.5808 -8.1764 -0.8405 13 7 6.9419 -8.5489 -2.0489 14 6 6.5945 -7.8290 -3.1144 15 6 5.8301 -6.6611 -2.9251 16 6 5.6059 -6.1022 -4.2020 17 7 6.1753 -6.8643 -5.0917 18 7 6.8051 -7.9421 -4.4564 19 6 7.5524 -9.0127 -5.1209 20 6 6.6131 -10.1374 -5.4726 21 1 5.5643 -10.0622 -5.2262 22 6 7.0927 -11.2626 -6.1090 23 7 6.2731 -12.2444 -6.4154 24 14 8.9067 -11.3925 -6.5358 25 1 9.6369 -12.0231 -5.4070 26 1 9.0697 -12.2228 -7.7563 27 1 9.4553 -10.0350 -6.7837 28 6 4.1775 -2.3196 0.1084 29 7 3.4803 -1.1991 0.0989 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5137 33 1 2.3791 1.5833 -1.0277 34 1 1.6084 2.0283 0.5139 35 1 3.1499 1.1384 0.5139 36 1 0.3852 -2.4042 -0.1863 37 1 1.6515 -4.5394 -0.1825 38 1 3.7665 -5.6209 0.4459 39 1 5.2630 -4.6694 0.5989 40 1 4.4402 -4.6062 -2.1023 41 1 6.8814 -8.7837 0.0005 42 1 5.0519 -5.1981 -4.4068 43 1 8.0116 -8.6249 -6.0303 44 1 8.3287 -9.3834 -4.4516 45 1 6.6104 -13.0359 -6.8635 46 1 5.2531 -2.2773 0.1951 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200367.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:30 Heat of formation + Delta-G solvation = 177.550110 kcal Electronic energy + Delta-G solvation = -29220.858086 eV Core-core repulsion = 25148.004254 eV Total energy + Delta-G solvation = -4072.853832 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.166 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.41407 -40.71892 -38.52524 -37.36691 -36.07920 -33.81248 -33.09175 -32.28187 -31.50741 -31.12579 -29.38012 -28.69563 -27.82023 -26.72136 -24.48779 -23.92273 -23.53002 -22.90114 -22.17356 -21.31343 -20.06432 -18.08304 -17.79491 -17.36113 -17.11310 -17.08379 -16.47664 -15.75579 -15.62276 -15.25361 -15.10818 -14.78697 -14.46460 -14.31023 -14.07138 -13.82655 -13.80148 -13.57376 -13.40107 -13.34488 -13.05268 -12.72831 -12.62264 -12.44163 -12.42651 -12.04426 -11.82279 -11.28818 -11.02794 -10.95724 -10.68761 -10.40908 -10.25330 -10.10556 -10.06722 -9.72912 -9.66769 -9.26763 -8.72107 -8.70120 -8.22992 -7.94664 -7.63323 -6.20413 -4.22775 0.89798 1.04269 1.29682 1.92857 2.48533 2.87688 3.01898 3.14044 3.22934 3.28557 3.30308 3.65409 4.11814 4.27973 4.37879 4.41615 4.50341 4.61232 4.65588 4.70650 4.72989 4.79620 4.85072 4.94405 4.99155 5.10433 5.11510 5.15422 5.19480 5.28978 5.43691 5.47656 5.54133 5.62897 5.68425 5.71578 6.02587 6.21398 6.27937 6.47143 6.52447 6.56357 6.89181 6.91851 6.93061 7.23986 7.33100 7.45596 7.77756 7.84957 8.15351 8.33090 8.78295 8.82621 9.34503 10.92337 Molecular weight = 353.17amu Principal moments of inertia in cm(-1) A = 0.022551 B = 0.001821 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.343082 B =15372.017431 C =15749.908617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.618 5.618 3 C 0.098 3.902 4 C 0.405 3.595 5 C -0.243 4.243 6 C -0.011 4.011 7 C -0.223 4.223 8 C 0.187 3.813 9 N -0.703 5.703 10 C 0.510 3.490 11 N -0.617 5.617 12 C 0.370 3.630 13 N -0.558 5.558 14 C 0.367 3.633 15 C -0.336 4.336 16 C 0.073 3.927 17 N -0.242 5.242 18 N -0.333 5.333 19 C 0.237 3.763 20 C -0.537 4.537 21 H 0.078 0.922 22 C 0.079 3.921 23 N -0.888 5.888 24 Si 0.875 3.125 25 H -0.270 1.270 26 H -0.280 1.280 27 H -0.264 1.264 28 C 0.172 3.828 29 N -0.544 5.544 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.409 0.591 41 H 0.196 0.804 42 H 0.183 0.817 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.268 0.732 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.933 25.527 16.315 31.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.332 5.332 3 C -0.045 4.045 4 C 0.171 3.829 5 C -0.267 4.267 6 C -0.037 4.037 7 C -0.228 4.228 8 C 0.063 3.937 9 N -0.336 5.336 10 C 0.258 3.742 11 N -0.348 5.348 12 C 0.076 3.924 13 N -0.283 5.283 14 C 0.119 3.881 15 C -0.354 4.354 16 C -0.122 4.122 17 N -0.057 5.057 18 N -0.119 5.119 19 C 0.118 3.882 20 C -0.576 4.576 21 H 0.096 0.904 22 C -0.125 4.125 23 N -0.525 5.525 24 Si 0.701 3.299 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.189 1.189 28 C 0.013 3.987 29 N -0.261 5.261 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.245 0.755 41 H 0.212 0.788 42 H 0.200 0.800 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.010 25.438 15.725 31.234 hybrid contribution -0.245 -0.279 -0.531 0.648 sum -9.255 25.159 15.194 30.814 Atomic orbital electron populations 1.21733 0.78406 1.03184 1.01628 1.46229 1.05156 1.03189 1.78649 1.21578 0.97716 0.83830 1.01365 1.18398 0.88569 0.85857 0.90094 1.21440 1.01125 0.91699 1.12456 1.21309 0.93246 0.98061 0.91109 1.20609 0.94618 0.96210 1.11376 1.19916 0.98094 0.92532 0.83147 1.44478 1.56045 1.24310 1.08791 1.17910 0.84396 0.85186 0.86715 1.67954 1.23432 1.10095 1.33329 1.24422 0.87006 0.88600 0.92364 1.67509 1.29480 1.33774 0.97520 1.18895 0.91911 0.89912 0.87358 1.19584 1.16753 1.04489 0.94584 1.23386 1.00406 0.99687 0.88729 1.76944 1.10646 0.96689 1.21440 1.48945 1.41942 1.20368 1.00622 1.20078 0.91573 0.83099 0.93413 1.21110 0.96527 0.99925 1.39996 0.90418 1.24774 0.98008 0.95003 0.94675 1.69871 1.35131 1.07135 1.40375 0.86871 0.85275 0.78973 0.78808 1.19499 1.20552 1.18871 1.22393 0.99548 0.86151 0.90588 1.67210 1.06144 1.31644 1.21078 0.92874 0.90951 0.90921 0.93406 0.91913 0.90121 0.84912 0.84668 0.90668 0.90571 0.75453 0.78779 0.79988 0.93089 0.93066 0.92171 0.82600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 10.28 59.85 0.62 1.00 16 2 N -0.62 -4.41 3.39 -189.66 -0.64 -5.05 16 3 C 0.10 0.58 10.50 59.85 0.63 1.21 16 4 C 0.41 3.62 7.37 -155.02 -1.14 2.48 16 5 C -0.24 -1.86 9.27 -39.22 -0.36 -2.22 16 6 C -0.01 -0.08 9.85 -39.32 -0.39 -0.47 16 7 C -0.22 -1.80 5.27 -104.46 -0.55 -2.35 16 8 C 0.19 1.67 5.88 -5.19 -0.03 1.64 16 9 N -0.70 -7.58 5.67 -61.26 -0.35 -7.93 16 10 C 0.51 7.68 7.55 -154.85 -1.17 6.51 16 11 N -0.62 -9.54 9.69 -13.62 -0.13 -9.67 16 12 C 0.37 6.08 12.24 -92.11 -1.13 4.95 16 13 N -0.56 -11.57 10.47 -13.97 -0.15 -11.72 16 14 C 0.37 8.00 8.04 -156.24 -1.26 6.75 16 15 C -0.34 -6.04 6.14 -106.82 -0.66 -6.70 16 16 C 0.07 1.24 11.87 -17.11 -0.20 1.03 16 17 N -0.24 -5.14 12.45 30.80 0.38 -4.76 16 18 N -0.33 -7.86 3.63 -61.64 -0.22 -8.08 16 19 C 0.24 6.00 5.26 -5.19 -0.03 5.97 16 20 C -0.54 -15.71 9.94 -34.44 -0.34 -16.05 16 21 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 22 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 23 N -0.89 -27.15 13.96 55.43 0.77 -26.38 16 24 Si 0.87 21.00 27.47 -169.99 -4.67 16.33 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 28 C 0.17 1.47 10.85 -17.57 -0.19 1.28 16 29 N -0.54 -5.35 9.08 -12.44 -0.11 -5.46 16 30 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.19 8.07 -51.93 -0.42 -0.23 16 32 H 0.07 0.26 5.98 -51.93 -0.31 -0.05 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.25 8.07 -51.93 -0.42 -0.17 16 35 H 0.08 0.58 7.30 -51.93 -0.38 0.20 16 36 H 0.13 0.75 6.03 -52.49 -0.32 0.44 16 37 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 40 H 0.41 3.81 8.33 -40.82 -0.34 3.47 16 41 H 0.20 2.39 8.06 -52.49 -0.42 1.97 16 42 H 0.18 2.13 8.06 -52.49 -0.42 1.70 16 43 H 0.05 1.26 7.20 -51.93 -0.37 0.89 16 44 H 0.05 1.27 7.57 -51.93 -0.39 0.88 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 391.95 15.07 5.91 5.91 Total: -1.00 -36.21 391.95 -11.43 -47.64 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.92 Total: 1.94 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -6.30 Total: 7.23 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -0.45 Total: -79.04 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.21 -11.43 -47.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200367.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.188 kcal (2) G-P(sol) polarization free energy of solvation -36.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds