Wall clock time and date at job start Tue Mar 31 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 N 1.34550 * 126.40758 * 35.71459 * 3 2 1 5 5 C 1.30398 * 109.55007 * 179.76060 * 4 3 2 6 6 N 1.34846 * 109.74144 * 0.38729 * 5 4 3 7 7 C 1.46503 * 126.27081 * 179.87864 * 6 5 4 8 8 C 1.50697 * 109.47328 * 264.69031 * 7 6 5 9 9 O 1.21301 * 119.99692 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00447 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00141 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47429 * 270.00193 * 11 10 8 13 13 H 1.07998 * 119.99606 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99937 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00333 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 119.99645 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47117 * 90.00085 * 16 14 12 18 18 H 1.48497 * 109.46789 * 210.00002 * 16 14 12 19 19 H 1.48498 * 109.47027 * 329.99548 * 16 14 12 20 20 C 1.40047 * 119.99690 * 0.02562 * 10 8 7 21 21 C 1.38808 * 120.07824 * 269.99823 * 20 10 8 22 22 C 1.38138 * 119.95404 * 179.97438 * 21 20 10 23 23 C 1.38278 * 120.11415 * 359.97438 * 22 21 20 24 24 C 1.38265 * 120.15797 * 359.97438 * 23 22 21 25 25 C 1.38309 * 120.04245 * 0.02562 * 24 23 22 26 26 F 1.35104 * 120.05836 * 179.97438 * 25 24 23 27 27 C 1.37434 * 107.45989 * 359.61753 * 6 5 4 28 28 C 1.43206 * 126.97424 * 180.26232 * 27 6 5 29 29 N 3.89094 * 113.04552 * 215.69215 * 2 1 3 30 30 H 1.08002 * 125.13423 * 180.26461 * 5 4 3 31 31 H 1.09000 * 109.46812 * 144.69193 * 7 6 5 32 32 H 1.09003 * 109.47213 * 24.68809 * 7 6 5 33 33 H 1.08996 * 109.46891 * 30.00527 * 11 10 8 34 34 H 1.09001 * 109.47102 * 150.00666 * 11 10 8 35 35 H 0.97001 * 119.99940 * 180.02562 * 15 14 12 36 36 H 1.07995 * 120.02026 * 359.95644 * 21 20 10 37 37 H 1.07996 * 119.94499 * 180.02562 * 22 21 20 38 38 H 1.07999 * 119.92237 * 180.02562 * 23 22 21 39 39 H 1.07998 * 119.98228 * 179.74395 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 7 3.3671 -0.8782 -0.6321 5 6 4.6149 -0.5677 -0.4156 6 7 4.6822 0.5229 0.3747 7 6 5.9052 1.1785 0.8446 8 6 6.2571 0.6617 2.2158 9 8 5.5556 -0.1725 2.7479 10 7 7.3518 1.1257 2.8504 11 6 7.6936 0.6237 4.1836 12 6 7.0320 1.4841 5.2292 13 1 6.4180 2.3209 4.9305 14 6 7.2106 1.2030 6.5671 15 7 7.9586 0.1843 6.9309 16 14 6.3899 2.2691 7.8631 17 1 5.0485 1.7171 8.1812 18 1 7.2233 2.2838 9.0921 19 1 6.2457 3.6537 7.3463 20 6 8.1621 2.0885 2.2358 21 6 9.2232 1.6945 1.4322 22 6 10.0204 2.6464 0.8268 23 6 9.7630 3.9913 1.0193 24 6 8.7067 4.3890 1.8179 25 6 7.9043 3.4415 2.4273 26 9 6.8723 3.8297 3.2081 27 6 3.3935 0.9103 0.6536 28 6 2.9831 2.0247 1.4540 29 7 2.6592 2.9079 2.0889 30 1 5.4660 -1.1042 -0.8081 31 1 5.7447 2.2555 0.8924 32 1 6.7212 0.9629 0.1547 33 1 7.3451 -0.4040 4.2852 34 1 8.7748 0.6558 4.3178 35 1 8.0839 -0.0136 7.8722 36 1 9.4254 0.6446 1.2808 37 1 10.8456 2.3397 0.2013 38 1 10.3880 4.7329 0.5441 39 1 8.5107 5.4401 1.9697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097379823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:55 Heat of formation + Delta-G solvation = 94.418106 kcal Electronic energy + Delta-G solvation = -30400.940020 eV Core-core repulsion = 26032.895163 eV Total energy + Delta-G solvation = -4368.044857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 353.103 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.63457 -42.73886 -40.09546 -38.51284 -36.80214 -36.64298 -35.37156 -34.45152 -32.83687 -30.83246 -30.74753 -29.73937 -29.12648 -26.86984 -24.49595 -23.28672 -23.09766 -22.66918 -22.61100 -20.14299 -19.22784 -18.05123 -17.91266 -17.24767 -16.95814 -16.46420 -16.00916 -15.79761 -15.52477 -15.18905 -15.09624 -14.97448 -14.77641 -14.25536 -14.15769 -13.62496 -13.54573 -13.50181 -13.26672 -13.20548 -13.11431 -13.03699 -12.81013 -12.76302 -12.33618 -12.23310 -12.06050 -11.61342 -11.36038 -11.02179 -10.77140 -10.70425 -10.58260 -10.28806 -9.86154 -9.69959 -9.05274 -8.94904 -8.63054 -8.53701 -8.31333 -6.18144 -4.22454 0.51887 0.98545 1.08663 1.67413 2.04005 2.35029 2.55513 2.64242 2.91282 3.20549 3.25903 3.32405 3.37078 3.41724 3.43660 3.49079 3.56502 4.20440 4.28015 4.33099 4.39294 4.44637 4.66722 4.69596 4.74553 4.80984 5.10514 5.18419 5.22270 5.49884 5.54300 5.59611 5.92163 5.99846 6.16546 6.22327 6.37165 6.55420 6.84003 6.97560 7.15540 7.19033 7.25054 7.33430 7.78488 7.86245 8.01369 8.35615 8.82177 9.43741 10.90585 Molecular weight = 353.10amu Principal moments of inertia in cm(-1) A = 0.008376 B = 0.004333 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3342.036066 B = 6461.079208 C = 8128.927795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C 0.297 3.703 3 C 0.136 3.864 4 N -0.451 5.451 5 C 0.248 3.752 6 N -0.409 5.409 7 C 0.073 3.927 8 C 0.497 3.503 9 O -0.501 6.501 10 N -0.549 5.549 11 C 0.251 3.749 12 C -0.533 4.533 13 H 0.065 0.935 14 C 0.067 3.933 15 N -0.893 5.893 16 Si 0.895 3.105 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.100 3.900 21 C -0.093 4.093 22 C -0.127 4.127 23 C -0.091 4.091 24 C -0.154 4.154 25 C 0.112 3.888 26 F -0.120 7.120 27 C 0.112 3.888 28 C 0.266 3.734 29 N -0.359 5.359 30 H 0.231 0.769 31 H 0.120 0.880 32 H 0.139 0.861 33 H 0.053 0.947 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.577 4.160 -19.247 20.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.068 5.068 2 C -0.020 4.020 3 C -0.001 4.001 4 N -0.168 5.168 5 C -0.036 4.036 6 N -0.088 5.088 7 C -0.053 4.053 8 C 0.282 3.718 9 O -0.374 6.374 10 N -0.279 5.279 11 C 0.134 3.866 12 C -0.572 4.572 13 H 0.083 0.917 14 C -0.136 4.136 15 N -0.532 5.532 16 Si 0.722 3.278 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C 0.007 3.993 21 C -0.112 4.112 22 C -0.145 4.145 23 C -0.109 4.109 24 C -0.173 4.173 25 C 0.091 3.909 26 F -0.098 7.098 27 C -0.012 4.012 28 C -0.051 4.051 29 N -0.036 5.036 30 H 0.247 0.753 31 H 0.138 0.862 32 H 0.157 0.843 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.891 4.318 -18.165 19.073 hybrid contribution 0.625 0.991 1.503 1.906 sum 4.516 5.309 -16.662 18.062 Atomic orbital electron populations 1.81273 1.10909 1.06900 1.07756 1.23718 0.90260 0.94114 0.93895 1.15555 0.86271 0.95358 1.02923 1.70336 1.00020 1.23720 1.22679 1.25162 0.96884 0.87195 0.94340 1.44872 1.04719 1.23281 1.35894 1.22168 0.85671 0.99760 0.97659 1.20156 0.81878 0.83443 0.86347 1.90822 1.48322 1.31790 1.66508 1.45836 1.23501 1.38587 1.19933 1.19564 0.96612 0.96321 0.74117 1.21438 1.31056 1.14039 0.90617 0.91671 1.24866 0.95030 0.95281 0.98429 1.69912 1.38333 1.27796 1.17143 0.86529 0.79552 0.80871 0.80809 1.20403 1.20980 1.19724 1.17826 0.95719 0.87343 0.98390 1.21356 0.93313 1.00790 0.95739 1.21072 0.99962 0.92586 1.00920 1.21033 0.96241 0.96327 0.97282 1.21150 0.96648 0.99618 0.99876 1.18193 0.87703 0.92396 0.92564 1.91591 1.55265 1.91269 1.71671 1.15939 0.84712 0.96374 1.04159 1.23767 0.95911 0.92061 0.93347 1.81302 1.05170 1.09759 1.07375 0.75335 0.86163 0.84322 0.92950 0.94338 0.92558 0.84532 0.85002 0.85000 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.03 18.54 41.84 0.78 -5.25 16 2 C 0.30 4.17 15.65 -22.47 -0.35 3.82 16 3 C 0.14 1.76 6.94 -84.41 -0.59 1.17 16 4 N -0.45 -5.20 11.24 -11.99 -0.13 -5.33 16 5 C 0.25 2.18 12.47 -90.64 -1.13 1.05 16 6 N -0.41 -4.47 2.24 -116.58 -0.26 -4.73 16 7 C 0.07 0.77 5.21 -5.19 -0.03 0.75 16 8 C 0.50 8.39 7.72 -10.99 -0.08 8.30 16 9 O -0.50 -10.70 16.01 5.54 0.09 -10.62 16 10 N -0.55 -9.94 2.33 -114.66 -0.27 -10.21 16 11 C 0.25 5.95 5.15 -5.19 -0.03 5.93 16 12 C -0.53 -14.46 9.34 -34.44 -0.32 -14.78 16 13 H 0.07 1.82 6.42 -52.49 -0.34 1.48 16 14 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 15 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 16 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.10 1.43 3.93 -83.59 -0.33 1.10 16 21 C -0.09 -0.95 9.97 -39.41 -0.39 -1.34 16 22 C -0.13 -1.00 10.04 -39.60 -0.40 -1.39 16 23 C -0.09 -0.74 10.04 -39.56 -0.40 -1.13 16 24 C -0.15 -1.65 10.02 -39.55 -0.40 -2.05 16 25 C 0.11 1.65 7.31 -39.25 -0.29 1.36 16 26 F -0.12 -2.23 15.68 2.25 0.04 -2.19 16 27 C 0.11 1.48 6.84 -83.09 -0.57 0.91 16 28 C 0.27 4.09 15.19 -22.50 -0.34 3.75 16 29 N -0.36 -6.25 18.53 41.80 0.77 -5.47 16 30 H 0.23 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.12 1.23 7.96 -51.93 -0.41 0.82 16 32 H 0.14 0.79 8.09 -51.93 -0.42 0.37 16 33 H 0.05 1.39 7.42 -51.93 -0.39 1.00 16 34 H 0.04 0.94 8.05 -51.93 -0.42 0.52 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -35.82 376.51 -6.56 -42.37 By element: Atomic # 1 Polarization: -2.32 SS G_CDS: -3.22 Total: -5.54 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: -5.73 Total: 9.20 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 1.62 Total: -55.85 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.82 -6.56 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097379823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.792 kcal (2) G-P(sol) polarization free energy of solvation -35.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds