Wall clock time and date at job start Tue Mar 31 2020 05:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46932 * 2 1 4 4 O 1.42899 * 109.47092 * 120.00341 * 2 1 3 5 5 C 1.35726 * 116.99652 * 146.84566 * 4 2 1 6 6 C 1.39051 * 119.88490 * 5.95127 * 5 4 2 7 7 C 1.37638 * 120.11999 * 179.72105 * 6 5 4 8 8 C 1.40044 * 119.87663 * 0.55054 * 7 6 5 9 9 C 1.46894 * 120.11456 * 179.74357 * 8 7 6 10 10 C 1.35226 * 120.00192 * 226.63743 * 9 8 7 11 11 C 1.41825 * 119.99406 * 10.68266 * 10 9 8 12 12 O 1.21789 * 120.00254 * 6.70101 * 11 10 9 13 13 C 1.47687 * 119.99487 * 186.70035 * 11 10 9 14 14 C 1.39797 * 120.07306 * 359.72418 * 13 11 10 15 15 C 1.37651 * 119.91918 * 179.74082 * 14 13 11 16 16 C 1.39161 * 120.07379 * 0.51407 * 15 14 13 17 17 O 1.35561 * 119.92614 * 179.73935 * 16 15 14 18 18 C 1.34774 * 117.00570 * 186.15967 * 17 16 15 19 19 H 1.08007 * 119.99681 * 5.62365 * 18 17 16 20 20 C 1.38740 * 120.00256 * 185.62705 * 18 17 16 21 21 N 1.31498 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46888 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47157 * 119.99902 * 22 20 18 25 25 H 1.48507 * 109.46974 * 239.99896 * 22 20 18 26 26 C 1.39167 * 120.15240 * 359.76243 * 16 15 14 27 27 C 1.37639 * 120.07775 * 359.97438 * 26 16 15 28 28 C 1.40040 * 119.76501 * 359.72251 * 8 7 6 29 29 C 1.37638 * 119.88035 * 0.02562 * 28 8 7 30 30 H 1.08991 * 109.47404 * 299.99311 * 1 2 3 31 31 H 1.09004 * 109.47572 * 60.00365 * 1 2 3 32 32 H 1.09005 * 109.46870 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46889 * 240.00243 * 2 1 3 34 34 H 1.09005 * 109.46660 * 60.00183 * 3 2 1 35 35 H 1.08998 * 109.46900 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47323 * 299.99983 * 3 2 1 37 37 H 1.07995 * 119.93826 * 359.97438 * 6 5 4 38 38 H 1.07998 * 120.05868 * 180.27256 * 7 6 5 39 39 H 1.07997 * 120.00146 * 46.64282 * 9 8 7 40 40 H 1.07991 * 120.00334 * 190.67942 * 10 9 8 41 41 H 1.07998 * 120.04741 * 0.02562 * 14 13 11 42 42 H 1.07994 * 119.96313 * 180.25196 * 15 14 13 43 43 H 0.97000 * 119.99919 * 180.02562 * 21 20 18 44 44 H 1.08004 * 119.95932 * 179.97438 * 26 16 15 45 45 H 1.07996 * 120.03839 * 179.97438 * 27 26 16 46 46 H 1.08001 * 120.05704 * 179.97438 * 28 8 7 47 47 H 1.07997 * 119.93942 * 179.97438 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.1662 -1.3682 1.0468 6 6 3.8963 -1.2988 -0.1346 7 6 5.0762 -1.9965 -0.2594 8 6 5.5351 -2.7865 0.8019 9 6 6.7907 -3.5377 0.6723 10 6 6.8441 -4.8355 1.0487 11 6 5.6486 -5.5353 1.3526 12 8 4.5681 -5.0081 1.1583 13 6 5.7141 -6.9036 1.9047 14 6 6.9535 -7.5124 2.1228 15 6 7.0109 -8.7857 2.6425 16 6 5.8369 -9.4709 2.9406 17 8 5.8969 -10.7268 3.4474 18 6 4.7293 -11.3836 3.5949 19 1 3.8126 -10.9438 3.2306 20 6 4.7049 -12.6246 4.2148 21 7 5.8211 -13.1602 4.6579 22 14 3.0867 -13.5352 4.4186 23 1 1.9859 -12.7242 3.8390 24 1 3.1621 -14.8417 3.7168 25 1 2.8255 -13.7633 5.8626 26 6 4.6014 -8.8699 2.7193 27 6 4.5367 -7.5949 2.2049 28 6 4.7930 -2.8573 1.9874 29 6 3.6171 -2.1514 2.1035 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6765 1.9563 0.8901 35 1 3.1299 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8899 37 1 3.5390 -0.6931 -0.9542 38 1 5.6446 -1.9384 -1.1759 39 1 7.6712 -3.0536 0.2765 40 1 7.7970 -5.3389 1.1177 41 1 7.8649 -6.9827 1.8883 42 1 7.9681 -9.2552 2.8151 43 1 5.8041 -14.0280 5.0910 44 1 3.6922 -9.4047 2.9514 45 1 3.5776 -7.1293 2.0330 46 1 5.1423 -3.4654 2.8088 47 1 3.0438 -2.2056 3.0171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098008624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:01 Heat of formation + Delta-G solvation = -24.628818 kcal Electronic energy + Delta-G solvation = -29011.820702 eV Core-core repulsion = 24898.747392 eV Total energy + Delta-G solvation = -4113.073311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.151 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.48579 -39.71225 -38.83298 -37.54207 -36.16726 -33.94294 -32.98937 -32.51556 -31.00466 -30.42273 -29.94386 -28.46307 -27.61071 -25.68449 -24.56520 -23.45862 -22.37116 -21.99455 -21.32772 -20.47071 -18.83181 -18.48431 -17.96468 -17.40785 -16.44129 -16.00250 -15.61459 -15.51031 -15.00000 -14.74553 -14.51888 -14.32642 -14.10584 -13.96513 -13.82376 -13.67843 -13.33731 -13.27802 -13.18530 -12.91380 -12.73944 -12.68549 -12.64202 -12.54884 -12.03503 -11.82288 -11.66466 -11.48217 -11.41227 -11.36342 -11.02478 -10.92178 -10.70832 -10.67115 -10.51959 -9.59811 -9.52799 -9.31795 -9.01386 -8.80446 -8.34434 -7.71489 -7.38642 -6.65727 -4.20947 0.58192 1.41461 1.58856 2.09983 2.18737 3.01603 3.02616 3.05440 3.11360 3.55939 3.82367 3.82757 4.40747 4.55580 4.55696 4.64273 4.66824 4.74531 4.80448 4.87708 4.95366 5.05553 5.14936 5.17762 5.28363 5.30936 5.34691 5.39790 5.53816 5.59545 5.64193 5.66880 5.74373 5.75730 5.79130 5.98406 6.05786 6.08222 6.16322 6.29160 6.35763 6.44844 6.51733 6.64664 6.74881 6.77901 6.93537 7.02479 7.25323 7.26905 7.36964 7.65590 7.80371 8.16166 8.79428 9.46103 10.50899 Molecular weight = 352.15amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.001893 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.015363 B =14790.994414 C =16283.990187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.073 3.927 3 C -0.175 4.175 4 O -0.311 6.311 5 C 0.139 3.861 6 C -0.224 4.224 7 C -0.062 4.062 8 C -0.103 4.103 9 C -0.026 4.026 10 C -0.224 4.224 11 C 0.419 3.581 12 O -0.472 6.472 13 C -0.269 4.269 14 C -0.030 4.030 15 C -0.206 4.206 16 C 0.174 3.826 17 O -0.161 6.161 18 C -0.392 4.392 19 H 0.098 0.902 20 C 0.042 3.958 21 N -0.851 5.851 22 Si 0.944 3.056 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.249 4.249 27 C -0.010 4.010 28 C -0.007 4.007 29 C -0.159 4.159 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.274 0.726 44 H 0.131 0.869 45 H 0.118 0.882 46 H 0.122 0.878 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 24.362 -9.232 26.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.017 3.983 3 C -0.232 4.232 4 O -0.225 6.225 5 C 0.094 3.906 6 C -0.243 4.243 7 C -0.081 4.081 8 C -0.103 4.103 9 C -0.045 4.045 10 C -0.243 4.243 11 C 0.305 3.695 12 O -0.355 6.355 13 C -0.271 4.271 14 C -0.049 4.049 15 C -0.225 4.225 16 C 0.117 3.883 17 O -0.062 6.062 18 C -0.468 4.468 19 H 0.115 0.885 20 C -0.164 4.164 21 N -0.483 5.483 22 Si 0.768 3.232 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.268 4.268 27 C -0.028 4.028 28 C -0.025 4.025 29 C -0.178 4.178 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.084 0.916 44 H 0.149 0.851 45 H 0.136 0.864 46 H 0.140 0.860 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.119 24.248 -8.953 26.036 hybrid contribution -0.567 -0.680 -0.097 0.890 sum -3.686 23.569 -9.050 25.514 Atomic orbital electron populations 1.21899 0.92807 1.03268 1.02891 1.22476 0.95272 0.92684 0.87902 1.22302 1.02081 0.95849 1.02963 1.86078 1.36827 1.62779 1.36825 1.19126 0.85601 0.91670 0.94219 1.20988 0.98351 1.06958 0.97959 1.20895 0.95284 0.94390 0.97487 1.18801 0.96481 0.99869 0.95167 1.22478 0.95958 0.93718 0.92308 1.22777 1.00556 0.95865 1.05089 1.19138 0.88622 0.86748 0.74947 1.90677 1.32103 1.68294 1.44426 1.19837 0.94111 0.97422 1.15700 1.20854 0.96172 0.93438 0.94413 1.20155 0.96659 0.95996 1.09676 1.19663 0.93412 0.85103 0.90111 1.83914 1.34065 1.20525 1.67653 1.21539 0.85133 1.00535 1.39575 0.88475 1.25407 0.99446 0.96190 0.95404 1.70017 1.26547 1.17145 1.34638 0.85585 0.79677 0.79253 0.78638 1.18815 1.19889 1.19887 1.21135 0.98122 0.97001 1.10580 1.20910 0.97254 0.92780 0.91883 1.20922 0.92112 0.92922 0.96532 1.20237 0.98398 1.00294 0.98837 0.91501 0.90685 0.91592 0.90532 0.91482 0.91919 0.91115 0.85656 0.86045 0.85245 0.84812 0.86276 0.86030 0.91624 0.85131 0.86449 0.85984 0.85478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.56 37.16 0.36 -0.69 16 2 C 0.07 0.61 2.81 -26.73 -0.08 0.54 16 3 C -0.17 -1.17 9.42 37.16 0.35 -0.82 16 4 O -0.31 -3.69 9.77 -18.88 -0.18 -3.88 16 5 C 0.14 1.78 6.69 -38.98 -0.26 1.51 16 6 C -0.22 -2.54 8.70 -39.50 -0.34 -2.88 16 7 C -0.06 -0.71 9.79 -39.12 -0.38 -1.10 16 8 C -0.10 -1.31 4.38 -105.04 -0.46 -1.77 16 9 C -0.03 -0.29 9.78 -37.15 -0.36 -0.65 16 10 C -0.22 -2.81 9.24 -39.28 -0.36 -3.17 16 11 C 0.42 6.79 6.08 -34.35 -0.21 6.59 16 12 O -0.47 -8.54 12.15 5.11 0.06 -8.48 16 13 C -0.27 -4.83 5.88 -104.87 -0.62 -5.45 16 14 C -0.03 -0.51 9.42 -39.21 -0.37 -0.88 16 15 C -0.21 -4.11 9.98 -39.45 -0.39 -4.50 16 16 C 0.17 4.06 6.66 -38.89 -0.26 3.80 16 17 O -0.16 -4.40 9.74 0.79 0.01 -4.39 16 18 C -0.39 -10.53 9.43 30.92 0.29 -10.24 16 19 H 0.10 2.43 5.29 -52.48 -0.28 2.15 16 20 C 0.04 1.10 5.50 -17.51 -0.10 1.01 16 21 N -0.85 -23.86 13.67 55.48 0.76 -23.10 16 22 Si 0.94 19.74 29.55 -169.99 -5.02 14.71 16 23 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 C -0.25 -5.39 9.11 -39.46 -0.36 -5.75 16 27 C -0.01 -0.19 9.58 -39.22 -0.38 -0.57 16 28 C -0.01 -0.09 6.70 -39.13 -0.26 -0.35 16 29 C -0.16 -2.16 9.97 -39.50 -0.39 -2.55 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.62 5.79 -51.93 -0.30 0.32 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.45 7.86 -51.93 -0.41 0.04 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.13 1.13 5.75 -52.49 -0.30 0.82 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.13 1.36 6.26 -52.49 -0.33 1.03 16 41 H 0.12 1.56 6.21 -52.49 -0.33 1.23 16 42 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 43 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.13 2.81 5.71 -52.48 -0.30 2.52 16 45 H 0.12 2.18 7.64 -52.49 -0.40 1.78 16 46 H 0.12 1.69 7.28 -52.49 -0.38 1.31 16 47 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 393.91 15.07 5.94 5.94 Total: -1.00 -31.31 393.91 -9.00 -40.30 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.97 Total: 6.84 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -4.59 Total: -27.94 kcal Atomic # 7 Polarization: -23.86 SS G_CDS: 0.76 Total: -23.10 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.11 Total: -16.75 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.31 -9.00 -40.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098008624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.674 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds