Wall clock time and date at job start Tue Mar 31 2020 05:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35999 * 116.99866 * 2 1 4 4 C 1.38537 * 120.07091 * 0.02562 * 3 2 1 5 5 C 1.38244 * 120.02456 * 179.97438 * 4 3 2 6 6 C 1.38377 * 120.16492 * 0.02562 * 5 4 3 7 7 Cl 1.73604 * 119.92644 * 180.02562 * 6 5 4 8 8 C 1.38293 * 120.14315 * 359.74832 * 6 5 4 9 9 C 1.38725 * 119.96776 * 0.48511 * 8 6 5 10 10 N 1.40111 * 120.07926 * 179.79270 * 9 8 6 11 11 C 1.34780 * 120.00646 * 335.18604 * 10 9 8 12 12 O 1.21298 * 119.99331 * 354.47356 * 11 10 9 13 13 C 1.50696 * 120.00493 * 174.46625 * 11 10 9 14 14 C 1.50698 * 109.47078 * 180.02562 * 13 11 10 15 15 C 1.50700 * 120.00152 * 295.00644 * 14 13 11 16 16 N 1.28044 * 119.99880 * 115.00534 * 14 13 11 17 17 N 1.40097 * 120.00045 * 180.02562 * 16 14 13 18 18 C 1.34783 * 120.00100 * 179.97438 * 17 16 14 19 19 O 1.21791 * 119.99842 * 359.97438 * 18 17 16 20 20 C 1.41738 * 120.00273 * 180.02562 * 18 17 16 21 21 H 1.08000 * 119.99997 * 359.97438 * 20 18 17 22 22 C 1.40177 * 120.00315 * 179.97438 * 20 18 17 23 23 N 1.30616 * 119.99608 * 0.02562 * 22 20 18 24 24 Si 1.86804 * 120.00216 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46837 * 89.99954 * 24 22 20 26 26 H 1.48494 * 109.47200 * 210.00340 * 24 22 20 27 27 H 1.48500 * 109.47063 * 330.00312 * 24 22 20 28 28 H 1.09003 * 109.47004 * 59.99743 * 1 2 3 29 29 H 1.08998 * 109.47078 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47057 * 299.99710 * 1 2 3 31 31 H 1.07999 * 119.98509 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.91181 * 180.02562 * 5 4 3 33 33 H 1.07994 * 120.01871 * 180.25285 * 8 6 5 34 34 H 0.97007 * 119.99889 * 155.19196 * 10 9 8 35 35 H 1.09006 * 109.46467 * 60.00709 * 13 11 10 36 36 H 1.08991 * 109.47321 * 300.00865 * 13 11 10 37 37 H 1.08996 * 109.47554 * 89.99847 * 15 14 13 38 38 H 1.09001 * 109.47129 * 210.00202 * 15 14 13 39 39 H 1.08998 * 109.47154 * 329.99619 * 15 14 13 40 40 H 0.96996 * 120.00381 * 0.02562 * 17 16 14 41 41 H 0.97001 * 119.99312 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2933 2.3746 0.0005 5 6 1.9219 3.6058 0.0011 6 6 3.3036 3.6811 0.0005 7 17 4.0865 5.2306 0.0019 8 6 4.0621 2.5248 0.0047 9 6 3.4374 1.2862 -0.0007 10 7 4.2036 0.1132 -0.0009 11 6 5.4609 0.1295 -0.4861 12 8 5.8944 1.1320 -1.0136 13 6 6.3282 -1.0977 -0.3730 14 6 7.6759 -0.8186 -0.9869 15 6 7.7887 -0.5447 -2.4645 16 7 8.7252 -0.8142 -0.2531 17 7 9.9780 -0.5542 -0.8236 18 6 11.0824 -0.5490 -0.0511 19 8 10.9912 -0.7699 1.1432 20 6 12.3498 -0.2854 -0.6282 21 1 12.4307 -0.0891 -1.6871 22 6 13.4984 -0.2795 0.1754 23 7 13.4006 -0.5174 1.4559 24 14 15.1689 0.0672 -0.5854 25 1 15.4367 1.5273 -0.5473 26 1 16.2200 -0.6491 0.1808 27 1 15.1778 -0.4010 -1.9947 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2147 2.3191 0.0005 32 1 1.3330 4.5111 0.0019 33 1 5.1403 2.5859 0.0084 34 1 3.8291 -0.7108 0.3482 35 1 5.8542 -1.9271 -0.8980 36 1 6.4548 -1.3576 0.6779 37 1 7.6883 0.5256 -2.6444 38 1 8.7603 -0.8839 -2.8238 39 1 6.9992 -1.0778 -2.9942 40 1 10.0506 -0.3771 -1.7746 41 1 14.1955 -0.5136 2.0119 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100544232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:14 Heat of formation + Delta-G solvation = -41.641070 kcal Electronic energy + Delta-G solvation = -27547.606054 eV Core-core repulsion = 23262.395932 eV Total energy + Delta-G solvation = -4285.210121 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 353.097 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13619 -39.68129 -38.00736 -37.71398 -36.44683 -35.90783 -34.86451 -32.76814 -32.04846 -30.63399 -30.14798 -28.55441 -27.97028 -27.52730 -26.13483 -23.52210 -22.58510 -21.15991 -20.26175 -18.95961 -18.48686 -17.80064 -17.35906 -17.15166 -16.42991 -16.10216 -15.92085 -15.53942 -15.46765 -15.05753 -14.65697 -14.24307 -14.16175 -13.99516 -13.64021 -13.30115 -13.11453 -12.86404 -12.66926 -12.50265 -12.46737 -12.29171 -12.01601 -11.80708 -11.59801 -11.31452 -11.16805 -11.16243 -11.11285 -10.62201 -10.58008 -10.50764 -10.32388 -9.80337 -9.31829 -8.93598 -8.86786 -8.09041 -7.69219 -7.43999 -6.32715 -4.86074 0.82870 0.90612 1.96853 2.46678 2.50592 2.75948 3.04033 3.12041 3.15458 3.19180 3.34937 3.82979 4.16971 4.34270 4.48712 4.51157 4.63680 4.70605 4.72015 4.86844 4.95055 5.03783 5.13647 5.33200 5.38511 5.41991 5.48326 5.63648 5.76192 5.82174 5.88996 5.92771 6.02417 6.10075 6.38469 6.47669 6.86920 6.89254 7.18785 7.28400 7.90311 7.98695 8.08675 8.80987 8.84880 9.39209 10.47183 10.72704 Molecular weight = 353.10amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.002099 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.236937 B =13333.684910 C =14589.882182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.098 3.902 4 C -0.177 4.177 5 C -0.094 4.094 6 C -0.047 4.047 7 Cl -0.065 7.065 8 C -0.090 4.090 9 C 0.144 3.856 10 N -0.666 5.666 11 C 0.519 3.481 12 O -0.505 6.505 13 C -0.066 4.066 14 C 0.032 3.968 15 C -0.138 4.138 16 N -0.197 5.197 17 N -0.592 5.592 18 C 0.561 3.439 19 O -0.554 6.554 20 C -0.538 4.538 21 H 0.070 0.930 22 C 0.088 3.912 23 N -0.749 5.749 24 Si 0.916 3.084 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.263 1.263 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.166 0.834 34 H 0.418 0.582 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.370 0.630 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.265 2.663 -5.191 28.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.050 3.950 4 C -0.196 4.196 5 C -0.114 4.114 6 C -0.074 4.074 7 Cl -0.036 7.036 8 C -0.111 4.111 9 C 0.048 3.952 10 N -0.311 5.311 11 C 0.307 3.693 12 O -0.379 6.379 13 C -0.108 4.108 14 C -0.163 4.163 15 C -0.198 4.198 16 N -0.006 5.006 17 N -0.340 5.340 18 C 0.368 3.632 19 O -0.433 6.433 20 C -0.575 4.575 21 H 0.088 0.912 22 C -0.135 4.135 23 N -0.377 5.377 24 Si 0.740 3.260 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.187 1.187 28 H 0.075 0.925 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.184 0.816 34 H 0.254 0.746 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.208 0.792 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -27.156 2.977 -3.608 27.556 hybrid contribution 0.165 0.292 -1.542 1.578 sum -26.991 3.269 -5.150 27.672 Atomic orbital electron populations 1.23088 0.77834 1.04229 1.01492 1.86020 1.21790 1.26117 1.89054 1.18698 0.90268 0.85213 1.00792 1.20937 1.00088 0.90993 1.07632 1.20786 0.92323 0.98046 1.00240 1.20616 0.92490 0.87048 1.07258 1.98380 1.80991 1.27193 1.97010 1.21251 1.02632 0.88389 0.98828 1.16889 0.86715 0.87171 1.04428 1.43442 1.14258 1.11051 1.62365 1.20957 0.80842 0.90763 0.76755 1.90692 1.72164 1.34084 1.40932 1.20170 0.90834 0.95297 1.04488 1.23538 0.92894 1.06341 0.93488 1.21107 1.01989 1.03196 0.93459 1.73902 0.92324 1.06253 1.28109 1.47952 1.01871 1.73647 1.10518 1.17043 0.81357 0.78529 0.86244 1.90657 1.84864 1.52793 1.14986 1.19936 0.90358 1.51057 0.96186 0.91169 1.25752 1.00672 0.92682 0.94364 1.70020 1.30289 1.32263 1.05121 0.86234 0.80742 0.79136 0.79904 1.19464 1.20202 1.18688 0.92486 0.87972 0.92461 0.84255 0.84660 0.81634 0.74569 0.87151 0.86702 0.90246 0.92021 0.91668 0.79246 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.45 9.91 -19.74 -0.20 -2.65 16 3 C 0.10 0.91 6.70 -39.08 -0.26 0.65 16 4 C -0.18 -1.39 9.03 -39.47 -0.36 -1.75 16 5 C -0.09 -0.84 9.82 -39.53 -0.39 -1.23 16 6 C -0.05 -0.53 6.32 -39.51 -0.25 -0.78 16 7 Cl -0.06 -0.75 28.95 -51.86 -1.50 -2.25 16 8 C -0.09 -1.17 8.50 -39.38 -0.33 -1.50 16 9 C 0.14 1.65 6.45 -83.50 -0.54 1.11 16 10 N -0.67 -6.98 5.29 -9.75 -0.05 -7.03 16 11 C 0.52 6.80 7.55 -10.99 -0.08 6.72 16 12 O -0.51 -8.40 12.19 5.54 0.07 -8.33 16 13 C -0.07 -0.82 6.08 -29.04 -0.18 -1.00 16 14 C 0.03 0.55 6.04 -78.90 -0.48 0.08 16 15 C -0.14 -2.06 8.88 36.01 0.32 -1.74 16 16 N -0.20 -4.51 10.93 35.61 0.39 -4.12 16 17 N -0.59 -14.74 6.08 29.13 0.18 -14.56 16 18 C 0.56 16.81 7.69 -14.92 -0.11 16.69 16 19 O -0.55 -18.90 15.22 5.11 0.08 -18.82 16 20 C -0.54 -15.35 9.31 -37.52 -0.35 -15.70 16 21 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 22 C 0.09 2.45 5.50 -17.34 -0.10 2.36 16 23 N -0.75 -22.43 11.73 55.56 0.65 -21.77 16 24 Si 0.92 19.90 29.56 -169.99 -5.02 14.87 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 28 H 0.06 0.18 7.66 -51.93 -0.40 -0.21 16 29 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.17 7.66 -51.93 -0.40 -0.22 16 31 H 0.14 0.68 6.30 -52.49 -0.33 0.35 16 32 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 33 H 0.17 2.55 5.79 -52.49 -0.30 2.25 16 34 H 0.42 3.16 8.34 -40.82 -0.34 2.82 16 35 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.11 1.39 8.11 -51.93 -0.42 0.97 16 37 H 0.08 1.26 7.55 -51.93 -0.39 0.87 16 38 H 0.06 0.93 6.32 -51.93 -0.33 0.60 16 39 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 40 H 0.37 7.99 6.34 -182.60 -1.16 6.83 16 41 H 0.27 7.31 8.29 -40.82 -0.34 6.98 16 LS Contribution 371.53 15.07 5.60 5.60 Total: -1.00 -38.91 371.53 -7.23 -46.14 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.31 Total: 7.91 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -2.11 Total: 5.02 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 1.17 Total: -47.49 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.05 Total: -29.79 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.91 -7.23 -46.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100544232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.498 kcal (2) G-P(sol) polarization free energy of solvation -38.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds